LOC122357891 (LOC107749191,LOC107749120)


Basic Information

Item Value
gene id LOC122357891
gene name LOC107749191,LOC107749120
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20769044 ~ 20771030 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043257543.1
ATAATGTGAGGGAGCaaaggtcatttaaaaatatctttatgtacTTTAGCCTAACCACTCCTAGGTTTAGTAGGTTTTATTGCCATCTTTTGGGCTCCTGCTCAGTCTTGAAGTGATCCTTAACACACTTAagttatgcttttatttgtttttttattccttttatttctATGGTCTAGAATTTCTATTTCTAGACAGTTTTTGAGCTTCTAGATGTATCTGTAAGTAAAATGGCAGAAGCCAGCTTTTTAGGGGCTCAGCATGAGTTTAGGTGTTCAGTTTGTCTGAATGTACTGAAAGATGCAGTGGCCCTCACCTGTGGACACAGTTACTGTATGCGCTGTATTATAGACTACTGGGATCAGAAGACAATCTACAGCTGCCCTCAGTGCAGAAAGACCTTCACTCCAACACCTGTTTTAGGTAAAAACACCATGCTGGCTGAAGTGGTGGAGAAAATCAAAAAGACAAAGCTAGAAGCTGCTTGTCTTGATCAAAGTTATGCTCAATCTGGAGATGTGGAGTGTGACGTCTGTACTGAGGACAAAAGCAAAGCCATCAAGTCCTGTCTGGTGTGTCTGGAATCTTATTGTCAGGCACATTTTAAATGGCATGAAGAATTTCACTCAGGAAAGCGACACAAAATGACTGAAGCCACTGGACGACTGCAAGAGATGATCTGCCCTCAACATGATAAACTGCTGGAGATTTTCTGTCGTACTGATCAGTCctgtatatgttatatgtgtATGGTAGATGAACACAAAAACCATGACACTGTATCAGCTGCAGCAGAGAGGACTGAGAAACAGAGACATCTGGAAGAGACCCAGAGAACAAACCAGCAGAGAATTCAGGAAAGACAGAAGGAGCTTGAGGAGCTGAGAAAGGCTGTAGAGTCTTACAAGCGCTCTGCACAGACAGCAGTGGAGGACAGTGAGAGGATCTTTACTGAGCTGATCCTCTCCATTGAGAGAAGTCGATCTGAGGTGAAACAGTTGATCAGAGATCAGGAGAAGGCTGCAGTGAGTCAAGCTGAAGGACAAATGAAGCGTCTGGAGCAGGAGATTGAAGATCTGAGGAGGAGAGACTTTGAGCTGGAGCAGCTTTCATACACAGACAACCTTATCCATTTTCTCCAGAGTTTCCAGTCTCTTACTATTCCTCCTGGATCTACAGATTGTCCCAGCTTCACTGTCagttctcttctctcttttgatgatgttaaaaaatgtgTGCTTAATCTGAGAGAGAAACTGGAGCATTTCTGCAAAGAGGAGAAAGAAATGTTATCTTGTAGAGCGTCTGTTGGTTTCCAGTGAGAAACGTCAACATCATTCCTAGCTCTGAACCTGAGACCCGTGAGGACTTCCTCCAGT

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043257543.1 True 1379 mRNA 0.43 5 20769044 20771030

Neighbor

gene id symbol gene type direction distance location
LOC122357878 NA coding upstream 843 20763531 ~ 20768201 (+)
LOC122357870 NA coding upstream 15068 20750836 ~ 20753976 (+)
march11 march11,LOC107659635,LOC107602618,LOC107749139,LOC107663337,LOC107721766 coding upstream 56892 20706964 ~ 20712152 (+)
LOC122360253 NA coding upstream 163111 20596332 ~ 20605933 (+)
tmem71 tmem71,si:ch211-235o23.1,LOC107690185,LOC107749144,LOC107659711,LOC107566994 coding upstream 180469 20578426 ~ 20588575 (+)
LOC122357864 NA coding downstream 1506 20772536 ~ 20778053 (+)
basp1 basp1 coding downstream 7684 20778714 ~ 20791858 (+)
efr3a efr3a,LOC107721726,LOC107749108,LOC107663339 coding downstream 83947 20854977 ~ 20887544 (+)
pard3ab pard3,LOC107690576,LOC107659281,LOC107557790 coding downstream 204509 20975539 ~ 21044413 (+)
LOC122362210 nrp1b,LOC107659377,LOC107749105,LOC107721698,LOC107690577 coding downstream 302055 21073085 ~ 21095565 (+)
G13909 gtpbp4,LOC107690210,LOC107721733,LOC107567003 non-coding upstream 151384 20616158 ~ 20617660 (+)
G13863 NA non-coding upstream 173951 20591718 ~ 20595093 (+)
G13896 NA non-coding upstream 236306 20532212 ~ 20532738 (+)
G13884 NA non-coding upstream 278131 20490111 ~ 20490913 (+)
G13883 NA non-coding upstream 282174 20486489 ~ 20486870 (+)
G13964 NA non-coding downstream 128534 20899564 ~ 20946266 (+)
G13980 NA non-coding downstream 184905 20955935 ~ 20957136 (+)
G13976 NA non-coding downstream 190663 20961693 ~ 20966228 (+)
G13992 NA non-coding downstream 377150 21148180 ~ 21148512 (+)
G13993 NA non-coding downstream 378191 21149221 ~ 21150007 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other upstream 260653 20493174 ~ 20508391 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other upstream 283826 20481664 ~ 20485218 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other upstream 295520 20467268 ~ 20473524 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other upstream 339696 20416203 ~ 20429348 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other upstream 2606902 18138644 ~ 18162142 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other downstream 392912 21163942 ~ 21164822 (+)
G14211 NA other downstream 536377 21307407 ~ 21361708 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other downstream 710104 21481134 ~ 21482642 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other downstream 762215 21533245 ~ 21621097 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other downstream 943653 21714683 ~ 21716290 (+)

Expression


Co-expression Network