basp1 (basp1)


Basic Information

Item Value
gene id basp1
gene name basp1
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20778714 ~ 20791858 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043257567.1
AACCGAATACGAGAGTGCGCGCGAGAAATGCAGCGCGAGACACACACCGAGCAGCCCCGATAAACCCCGCCGAATCCACGCGCACGGGAAAAAAGACACTGGGAAAAACAGCAGACGCCTGAGAAAGGAGTGACAGGAAAGTCCACCGCCGACGGTCAGAGGTAAAATGGGAGGGAAGCTGAGCAAAAAGAAGAAGGGATACAATGTGAACGACGAGAAGGCGAAAGAGAAGGACGCAAAGACGGAGGGAGCGTCGGCGGAGGAGGGCGAAGCTCCGAAAGAAAACAAGGAGGATGCTCCTGCCGCCACCGAAACAACCAATGACACGGCTGCGGCTGCCAAAGAAGCCACGCCCACCGCCGACAGCAACTCCACTGCACCcaaggaggaggagaaaagcACCGCCCCTCCAAAGAAGGAGGAGCCTGCGGCGAACGCTAGCGCTCCTAAAGCATCTGACGCCAAGAGCAGCGAGGCTGCCAAAGCAGAACCCGCCAAGAGTCCAGATACCCCTCCTGTCAAAGCGGAAGAGAAATCTGCCCCCTCTGCGGCTCCGGCCAATGAGAAAGAAGCAGCGAAAGAGCCCGCTAAAGATCCCGCCCCTCCTGTAGCCACAGCGACGGAGAGCAAGCCCGACGCTGAGTCTAAAAAGACTGAGGCTCCGCCCGCAAAAGAATCCGCCCCCGCAGAGCCAATCACCACGGAGACCAGCCCGGCCCCCAACAAGGAGCAAGCAGTCGCTGTGCAGGATTAACAGAAGGAACAGTGAATGGCAAGattaatgacaaatgaaaaaccagatcaaatctaaataattaaaactagcccgcccattttaaatgatatcagtaattataatatgaataatgataataataacaataatgattttaataggCTGGACTTTGATCATTGTGTTGGTGATGGACATGATCATGGTGAATAAGACTGGCAGTTATGATGATATTATCTTTAATATCCAATTGAACTTTGATACAAACCACCAGCCcccaactctctctctctatctcttctCACCTTTCTTTCTACCTCTATTCAATGAGGGGTGGAATACAAACATGGAATCTATTCATTGCCACCCTCCAAATCTCACTTCCCTCCATTTGAGTGTGATGTGATGGCAGTGGGTGAagttaatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgacagtagtagtaatagtagtagtccAGCCTCCCTGATACACATTTCATATTTCCTGTTTGCTGCTTTCTAGTTAGTGATTGGCATTGTGTCTTTGCTTATCTCCCGACTTTCctactttatttgtttctctctctttctcgctctctctctctctctctctctctctctctttttctcacatATCAGTGGAAACAAAATCAGTGTATAGCACAatgcatcaaacacacacatgcacacatgcacagtACTGAATGTTAACAGTATTAGTGTTTTcgttttttaaaggaacagttcacccaaaaacgatGATCTACacctgtgtgactttttttgtcatctgcAGGATGCAAAAGTAAAACGAGCTGCTCATTTCCTTGCATAAAAGTAAATGGGGACTATATCTGTTAAGCCAGATTTTAAGGAAAAagtgatttagattttaaagaagacttggaatatagtACACAAGCCGTATAGACTACTTTTGTGAAGCTTTTATGGTGCTATTTTGTAGCTTGACAGACTTTGGTCCCCATCCACTTTTAGTGTATAGAAAAGCAGTGTgcacattcttaaaaatgtttccttttgtGTTACACctaagaaagtaagtcatacaagttaaagatcatttttattattttaattaataggtgaactatccctttaattggATGTTTGAAGGTTAATTTAAAGTGTGAATGTGTGGAGGCATCCGGGAGTAtgaagtgagtgtgtgtatggaGTTATGCATGGTATTAGCATGCAttttctgcatgtgtgtgtgtgtgtgtgtgtgtgtgttaacggAGTTCTGGTCTTTCTACACTTTGGAAGCAGCAGACGTCATGAtgtcagagagacagagagagcgagccCAGACCTCCAAAACTCACCAAACAggacacacttcacacacaccgATCTCTCAATATACTGGCAGACCAATGTGAGCGTtgtgtgtatctgtatgtgtgaggctgtgtgtgtgttttgcatgtCAGTGGTTGGCCCtattgttgtgtatttttgGTTGCTGTGGAGATAATGTTGCTACAGGtgatatttcatttgaattaacacacacgctctctctctctctttctttctctatcaTTCCTTTCCTGTCCAAAATTCcctggtaaaataaaaaataaaaaataaaatggaagaaCTGAGATATATGTAATTGTATACATGGagcaacattaataaaatgagaGAAACCGATTGAAAATCA

Function

symbol description
basp1 Predicted to be located in plasma membrane. Orthologous to human BASP1 (brain abundant membrane attached signal protein 1).

NR:

description
brain acid soluble protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043257567.1 True 2459 mRNA 0.44 2 20778714 20791858

Neighbor

gene id symbol gene type direction distance location
LOC122357864 NA coding upstream 661 20772536 ~ 20778053 (+)
LOC122357891 LOC107749191,LOC107749120 coding upstream 7684 20769044 ~ 20771030 (+)
LOC122357878 NA coding upstream 10513 20763531 ~ 20768201 (+)
LOC122357870 NA coding upstream 24738 20750836 ~ 20753976 (+)
march11 march11,LOC107659635,LOC107602618,LOC107749139,LOC107663337,LOC107721766 coding upstream 66562 20706964 ~ 20712152 (+)
efr3a efr3a,LOC107721726,LOC107749108,LOC107663339 coding downstream 63119 20854977 ~ 20887544 (+)
pard3ab pard3,LOC107690576,LOC107659281,LOC107557790 coding downstream 183681 20975539 ~ 21044413 (+)
LOC122362210 nrp1b,LOC107659377,LOC107749105,LOC107721698,LOC107690577 coding downstream 281227 21073085 ~ 21095565 (+)
LOC122359068 itgb1b,LOC107749113,LOC107563813,LOC107659805,LOC107690578 coding downstream 307827 21099685 ~ 21115999 (+)
itgb1b.2 LOC107749109,LOC107563812 coding downstream 324611 21116469 ~ 21122754 (+)
G13909 gtpbp4,LOC107690210,LOC107721733,LOC107567003 non-coding upstream 161054 20616158 ~ 20617660 (+)
G13863 NA non-coding upstream 183621 20591718 ~ 20595093 (+)
G13896 NA non-coding upstream 245976 20532212 ~ 20532738 (+)
G13884 NA non-coding upstream 287801 20490111 ~ 20490913 (+)
G13883 NA non-coding upstream 291844 20486489 ~ 20486870 (+)
G13964 NA non-coding downstream 107706 20899564 ~ 20946266 (+)
G13980 NA non-coding downstream 164077 20955935 ~ 20957136 (+)
G13976 NA non-coding downstream 169835 20961693 ~ 20966228 (+)
G13992 NA non-coding downstream 356322 21148180 ~ 21148512 (+)
G13993 NA non-coding downstream 357363 21149221 ~ 21150007 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other upstream 270323 20493174 ~ 20508391 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other upstream 293496 20481664 ~ 20485218 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other upstream 305190 20467268 ~ 20473524 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other upstream 349366 20416203 ~ 20429348 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other upstream 2616572 18138644 ~ 18162142 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other downstream 372084 21163942 ~ 21164822 (+)
G14211 NA other downstream 515549 21307407 ~ 21361708 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other downstream 689276 21481134 ~ 21482642 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other downstream 741387 21533245 ~ 21621097 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other downstream 922825 21714683 ~ 21716290 (+)

Expression


Co-expression Network