LOC122358486 (LOC107602635,LOC107566996,LOC107721759)


Basic Information

Item Value
gene id LOC122358486
gene name LOC107602635,LOC107566996,LOC107721759
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20537537 ~ 20539554 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258304.1
caaggtattttttttaatgctggtaACAAAGCAGTTGGTCCTCATTGACTTCTATAGAAAGATATGGAAGCCACGGGGGAAACAGTTGACCCATATTATTTAACATGTCTTCTTGAGACAGGGTGCGACAAACGctgaatgacagaattttcatttgagggtgaactatccctttaataggCACATTAGCAAAACGTTtagattaaacattttgttagaaagaaaaaacgtaaaagaaagcttttttttagtaaatgtagGCCTAAACACACTCATGAAATAGGTATAAGTTCACTAACATTTTACTAAAGGTAAAAAAGCAACTGTTCTGCACCATGCGGTGTCTCAGTAACTGTCCTCTCACAGCAAGTCCACGTTTCCGGTCACCGCTGGCCATTCATGTGTGTGCTCCAGCATTGAACAGgccatttaaaaaatggaaagaacGCATTTTGTCCATGTTGGTGATTATTTAGGGTGTCAACCGGTTGGAAGGCCCTCTGTCCAAGTACCCTGTTCCTGGATTGACTGCTGAAGTGCCAATGATTTGAGCAGGTAGAAATGCGCGACAGTGCAGCGTCTCTCAATCACCAGCGGTTCAATCAGATGCATTAACACGAATTAACAAAGGCCCGGTTAATTCAGAAGAGACCGCCTCTCGATTAAATCCACAGCGTGAACTAAACACGCGACGGAACGCAAGACCATTTTCATTTAGGATCCACTCGAACCGCGGCCAATTACTCCATGACTCATTCTGGTGATTCTGTCATCTCAGAAATAAGATGCTCTTCGCCTCGTATAAATGAACCCCGGCGATGCTCTTAGCTGCACCGACAATCGACTCACAAACGAGGTCACTTACGGAGCACACCGACGGAGATTACGGGGATTTGCCTCAATGAAGCTGCACCTGCTACTCGCCGCTGTGTCTCTCGGTGTCTTCGTCTCGCTTTCTGGGTCCGCTCCCGGACACACGAACACGCGGTCGCCGGTTCTGATGCGCTTAGGAGAGGAGTACTTCATCAGGCTGGACAACGCCGACCGGAGATCACCGTCACGCACCGAGGCGCTTCAGCTGCAGCTCACGCAGCGGCAGCTAGGAGGTAAGCTCGGTCGCGTCGGTAACGGGATCGCGAACAGCTTCGAGGAGCGGGAGCGCCGGTCCGAGGATCCGCCGATTTCGCTGGATCTGACCTTTCACCTGTTGCGCGAGGTGCTGCAGATGGCGCGAGCCGAACAGCTGGCCCAGCGCGCGAGCAACAACCGCAAGATTATGGACGATTTAGGGAAATAACACATGACTTGCGCAATTACATTACATGTATACGCATGTTTTTACGTTCATCAAGTGACATAAAACGTGTTCAGAGTTAACTCTTCTTAATACTGTGTTTTGAGTCTTTGTAGgctttagtaataataaattattcataaacagGCATATACTCAGTGAAAGACAagatcatgttttattttatattttaattagctactttgaaaaaaaaaagtcatatttaacaGTTGTTAAACATTTTATCTTTACAATTTCCAACCTTGccattacatgtatatttattactgtCAAAGTAG

Function

NR:

description
PREDICTED: corticoliberin-like

GO:

id name namespace
GO:0032400 melanosome localization biological_process
GO:0035902 response to immobilization stress biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258304.1 True 1593 mRNA 0.45 2 20537537 20539554

Neighbor

gene id symbol gene type direction distance location
vcpip1 vcpip1,LOC107567007,LOC107721719,LOC107659314,LOC107690121,LOC107749097,LOC107602633 coding upstream 8531 20519909 ~ 20529006 (+)
odf3l2a zgc:110183,LOC107749223,LOC107602632,LOC107721708,LOC107588920,LOC107690329,LOC107678684 coding upstream 102115 20433469 ~ 20435422 (+)
acvr1l acvr1l,LOC107678695,LOC107749086,LOC107602619,LOC107721710,LOC107690001 coding upstream 233763 20294585 ~ 20303774 (+)
epha4b epha4b,LOC107694655,LOC107668971,LOC108428906,LOC108268054,LOC103372263 coding upstream 791642 19644610 ~ 19745895 (+)
LOC122324221 NA coding upstream 906407 19629741 ~ 19631130 (+)
LOC122355453 NA coding downstream 4272 20543826 ~ 20547503 (+)
LOC122355454 cyp7b1,LOC107749124,LOC107659553,LOC107602637,LOC107566988,LOC107690180,LOC107721742 coding downstream 10389 20549943 ~ 20555995 (+)
tmeff1a LOC107749138,LOC107602613,LOC107659611 coding downstream 23360 20562914 ~ 20567961 (+)
cavin4a murca,LOC107749140,LOC107602614,LOC107659646,LOC107690354,LOC107721748,LOC108428327 coding downstream 28903 20568457 ~ 20571921 (+)
ift57 ift57,LOC107659588,LOC107602615,LOC107566989,LOC107690362 coding downstream 33193 20572747 ~ 20577649 (+)
G13896 NA non-coding upstream 4799 20532212 ~ 20532738 (+)
G13880 NA non-coding upstream 34198 20481017 ~ 20503339 (+)
G13851 LOC107721736 non-coding upstream 37587 20477963 ~ 20499950 (+)
G13884 NA non-coding upstream 46624 20490111 ~ 20490913 (+)
G13883 NA non-coding upstream 50667 20486489 ~ 20486870 (+)
G13863 NA non-coding downstream 52164 20591718 ~ 20595093 (+)
G13909 gtpbp4,LOC107690210,LOC107721733,LOC107567003 non-coding downstream 76604 20616158 ~ 20617660 (+)
G13964 NA non-coding downstream 360010 20899564 ~ 20946266 (+)
G13980 NA non-coding downstream 416381 20955935 ~ 20957136 (+)
G13976 NA non-coding downstream 422139 20961693 ~ 20966228 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other upstream 29146 20493174 ~ 20508391 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other upstream 52319 20481664 ~ 20485218 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other upstream 64013 20467268 ~ 20473524 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other upstream 108189 20416203 ~ 20429348 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other upstream 2375395 18138644 ~ 18162142 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other downstream 624388 21163942 ~ 21164822 (+)
G14211 NA other downstream 767853 21307407 ~ 21361708 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other downstream 941580 21481134 ~ 21482642 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other downstream 993691 21533245 ~ 21621097 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other downstream 1175129 21714683 ~ 21716290 (+)

Expression


Co-expression Network