apol1 (LOC107557777,LOC107659387,LOC107706364,LOC107668938)


Basic Information

Item Value
gene id apol1
gene name LOC107557777,LOC107659387,LOC107706364,LOC107668938
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17682504 ~ 17687392 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258461.1
CAACTTTTAACAACAGCTTTTTAGTGTCAATTATTGTAATTGTACAAACTTTAGTATGTATAGTGTGAAAGCACTGTAATATTTAGGAAAAGTTCGGGAGAGGCATGGATACGTGTATCTGTTACGTTCAATCCCGTGGTTTGATTTGACTCTGTTGACAAAGCAGCCTCAGGCAGGACTAACTTTTGATTTCATTTCTCAAATACCCTTACTGTCACCCTTATTTTGTCTCTAATATTCATGTTTAACCTGCGTCAGAATGTCATTTCAGGATCGGgacattttaataatggaCATCGAACTTTCTAAAACCGATGAAGACTGTGGCAATCACTCCACAACTGAGGGtatggaaaaaacacaaaagtcttTGGAGCCCTGTGAGAAACCTGAGGATAAATCGTCCAAATCTATGCAGGACACTAGCAATGAGATTGTGGAAAAGACGCCTGCCAAAGTGGATGAGACACCTGGAGAAGAGGAAAATCCAAAACAAACAGGACTAAAGAAGAAACCTAAAAATCCATTTATGCCCCAGGTAGCagcaaagAACAAAACAATGCAGAAGAAGAATGGAAACCAAAATGGAGACAGTGGCAGTGACCTTGCAGAGACCAAAGGCCCCAAGAAGTCCCTCATGGAATGGCTGGATGAGTTTCGTTTAAGTGAAACTCAGAGAGAAGATGAGGAGGACCTTGATGGCCTCATGGATTGGTGGGACACTGTGGAACAATGGGAAGAGATGCCTAAAAGTGACAACAtgacagagaaagaggaagcCAAGGCTTTTGCTATAACAGCTGAAAAGGTGCAAAAAGGCATACGTGTGTTTAATAAGCTTTTCTCAGAACGGGCAGAAGGACTATGGCAGCATGTGATTGACCTGCATGCCATTGCTGATGGCCTGGACCGCTTCAACAAGAAAACCAAGATTGCCCAGATCACTGGTGGCTCCACCAGTGCTGTAGGAGGTGTTGCTACCATAACTGGCCTCATCTTAGCACCCTTCACAATGGGAACCTCTCTGATCGTCACTGCGGTTGGTTTGGGTGTTGCCATGGCAGGTGGTCTTACCTCTGCATCTGCTGGGATATCTAGTACCGTCAACAATTCTTTGGATCGCAAGAAGGTGGAGCGCATTGTGGAAGACTACCAGGTGAAGATGACTGACCTTAACAAATGCATGAAGTTCATCAAACAAGGCATTACAAACCTACGCAAGTTCAACCTGAACAAGATGAAGAAGCATGCGTATAATAGAGACTTCCCTTGTTTCGACAATATTTACGAGGACGGTGCCATGGCGGGGAAAGCTGTTCTCACCAATGCCAATGAGATTATGCGTGTGATGCAGATAGCCAACGTGGCTGGAACCACTGCGGCACGTGCTGTGCAGATTGCTAGTATATCCACAGGTGTTCTGACAGGGCTTTTTGTCGGGATGGACATCTATTTTGTGGCCAAGGACTCCCATGAGCTGAAAAATGGTGCAAAGTCGGAATTTGCTGCTAAGATTAGAGAAGTGGCAGATCAGCTGCATGAGGGCTTGATGGAACTTAACATAATCCGAGATGAGTTGCGGTTTACGACCACTGTGAAAGAAGACAAACCATCATGACAAACTCTGTGAACAGTCCTCtgggtttatttttactttcacactagattatataacaaaaaaaaaaagattgtagaACTATACCGGCTTTCCTTATCAGCCAGCAAAGGATATTTGGGATCTTATTTAGTACTTTATATCTGCTGCTTGTTATGGTGTATTTGCTGCTTTTATAAGGCTAaaggaatattaaaaaatatacgcTCTC
>XM_043258470.1
TACAGACACAACAAACAAGGCAAGAAAGGGTGGAGTTAATAACTTACGCTAACGTTACAAGTCAGCGGTTAAACAAGTAGCCTAGTGCTGCACGTTAATAGAAAATACAATGGAAACCATTTACAGTacacaattttgatttcatagaCAGACCACAGATTTATTTCCCTTTTGTTCTGCTCCTTTAAGGCACTTCTTTCCTCAGGGAAGTGGGCAGTGTGCGgacattttaataatggaCATCGAACTTTCTAAAACCGATGAAGACTGTGGCAATCACTCCACAACTGAGCAGGGtatggaaaaaacacaaaagtcttTGGAGCCCTGTGAGAAACCTGAGGATAAATCGTCCAAATCTATGCAGGACACTAGCAATGAGATTGTGGAAAAGACGCCTGCCAAAGTGGATGAGACACCTGGAGAAGAGGAAAATCCAAAACAAACAGGACTAAAGAAGAAACCTAAAAATCCATTTATGCCCCAGGTAGCagcaaagAACAAAACAATGCAGAAGAAGAATGGAAACCAAAATGGAGACAGTGGCAGTGACCTTGCAGAGACCAAAGGCCCCAAGAAGTCCCTCATGGAATGGCTGGATGAGTTTCGTTTAAGTGAAACTCAGAGAGAAGATGAGGAGGACCTTGATGGCCTCATGGATTGGTGGGACACTGTGGAACAATGGGAAGAGATGCCTAAAAGTGACAACAtgacagagaaagaggaagcCAAGGCTTTTGCTATAACAGCTGAAAAGGTGCAAAAAGGCATACGTGTGTTTAATAAGCTTTTCTCAGAACGGGCAGAAGGACTATGGCAGCATGTGATTGACCTGCATGCCATTGCTGATGGCCTGGACCGCTTCAACAAGAAAACCAAGATTGCCCAGATCACTGGTGGCTCCACCAGTGCTGTAGGAGGTGTTGCTACCATAACTGGCCTCATCTTAGCACCCTTCACAATGGGAACCTCTCTGATCGTCACTGCGGTTGGTTTGGGTGTTGCCATGGCAGGTGGTCTTACCTCTGCATCTGCTGGGATATCTAGTACCGTCAACAATTCTTTGGATCGCAAGAAGGTGGAGCGCATTGTGGAAGACTACCAGGTGAAGATGACTGACCTTAACAAATGCATGAAGTTCATCAAACAAGGCATTACAAACCTACGCAAGTTCAACCTGAACAAGATGAAGAAGCATGCGTATAATAGAGACTTCCCTTGTTTCGACAATATTTACGAGGACGGTGCCATGGCGGGGAAAGCTGTTCTCACCAATGCCAATGAGATTATGCGTGTGATGCAGATAGCCAACGTGGCTGGAACCACTGCGGCACGTGCTGTGCAGATTGCTAGTATATCCACAGGTGTTCTGACAGGGCTTTTTGTCGGGATGGACATCTATTTTGTGGCCAAGGACTCCCATGAGCTGAAAAATGGTGCAAAGTCGGAATTTGCTGCTAAGATTAGAGAAGTGGCAGATCAGCTGCATGAGGGCTTGATGGAACTTAACATAATCCGAGATGAGTTGCGGTTTACGACCACTGTGAAAGAAGACAAACCATCATGACAAACTCTGTGAACAGTCCTCtgggtttatttttactttcacactagattatataacaaaaaaaaaaagattgtagaACTATACCGGCTTTCCTTATCAGCCAGCAAAGGATATTTGGGATCTTATTTAGTACTTTATATCTGCTGCTTGTTATGGTGTATTTGCTGCTTTTATAAGGCTAaaggaatattaaaaaatatacgcTCTC
>XM_043258476.1
TCCGTGGATTTACAGACACAACAAACAAGGCAAGAAAGGGTGGAGTTAATAACTTACGCTAACGTTACAAGTCAGCGGTTAAACAAGTAGCCTAGTGCTGCACGTTAATAGAAAATACAATGGAAACCATTTACAGTacacaattttgatttcatagaCAGACCACAGATTTATTTCCCTTTTGTTCTGCTCCTTTAAGGCACTTCTTTCCTCAGGGAAGTGGGCAGTGTGCGgacattttaataatggaCATCGAACTTTCTAAAACCGATGAAGACTGTGGCAATCACTCCACAACTGAGGGtatggaaaaaacacaaaagtcttTGGAGCCCTGTGAGAAACCTGAGGATAAATCGTCCAAATCTATGCAGGACACTAGCAATGAGATTGTGGAAAAGACGCCTGCCAAAGTGGATGAGACACCTGGAGAAGAGGAAAATCCAAAACAAACAGGACTAAAGAAGAAACCTAAAAATCCATTTATGCCCCAGGTAGCagcaaagAACAAAACAATGCAGAAGAAGAATGGAAACCAAAATGGAGACAGTGGCAGTGACCTTGCAGAGACCAAAGGCCCCAAGAAGTCCCTCATGGAATGGCTGGATGAGTTTCGTTTAAGTGAAACTCAGAGAGAAGATGAGGAGGACCTTGATGGCCTCATGGATTGGTGGGACACTGTGGAACAATGGGAAGAGATGCCTAAAAGTGACAACAtgacagagaaagaggaagcCAAGGCTTTTGCTATAACAGCTGAAAAGGTGCAAAAAGGCATACGTGTGTTTAATAAGCTTTTCTCAGAACGGGCAGAAGGACTATGGCAGCATGTGATTGACCTGCATGCCATTGCTGATGGCCTGGACCGCTTCAACAAGAAAACCAAGATTGCCCAGATCACTGGTGGCTCCACCAGTGCTGTAGGAGGTGTTGCTACCATAACTGGCCTCATCTTAGCACCCTTCACAATGGGAACCTCTCTGATCGTCACTGCGGTTGGTTTGGGTGTTGCCATGGCAGGTGGTCTTACCTCTGCATCTGCTGGGATATCTAGTACCGTCAACAATTCTTTGGATCGCAAGAAGGTGGAGCGCATTGTGGAAGACTACCAGGTGAAGATGACTGACCTTAACAAATGCATGAAGTTCATCAAACAAGGCATTACAAACCTACGCAAGTTCAACCTGAACAAGATGAAGAAGCATGCGTATAATAGAGACTTCCCTTGTTTCGACAATATTTACGAGGACGGTGCCATGGCGGGGAAAGCTGTTCTCACCAATGCCAATGAGATTATGCGTGTGATGCAGATAGCCAACGTGGCTGGAACCACTGCGGCACGTGCTGTGCAGATTGCTAGTATATCCACAGGTGTTCTGACAGGGCTTTTTGTCGGGATGGACATCTATTTTGTGGCCAAGGACTCCCATGAGCTGAAAAATGGTGCAAAGTCGGAATTTGCTGCTAAGATTAGAGAAGTGGCAGATCAGCTGCATGAGGGCTTGATGGAACTTAACATAATCCGAGATGAGTTGCGGTTTACGACCACTGTGAAAGAAGACAAACCATCATGACAAACTCTGTGAACAGTCCTCtgggtttatttttactttcacactagattatataacaaaaaaaaaaagattgtagaACTATACCGGCTTTCCTTATCAGCCAGCAAAGGATATTTGGGATCTTATTTAGTACTTTATATCTGCTGCTTGTTATGGTGTATTTGCTGCTTTTATAAGGCTAaaggaatattaaaaaatatacgcTCTC

Function

NR:

description
PREDICTED: apolipoprotein L6-like isoform X2

GO:

id name namespace
GO:0042157 lipoprotein metabolic process biological_process
GO:0006869 lipid transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258461.1 True 1826 mRNA 0.43 10 17682759 17687392
XM_043258470.1 False 1775 mRNA 0.44 10 17682514 17687392
XM_043258476.1 False 1782 mRNA 0.44 10 17682504 17687392

Neighbor

gene id symbol gene type direction distance location
LOC122357951 LOC107591364,LOC107706362,LOC107558878,LOC107659385,LOC107738151,LOC107738210,LOC107591430 coding upstream 29780 17631364 ~ 17652724 (+)
cbln13 NA coding upstream 144691 17536513 ~ 17537813 (+)
parp2 parp2,LOC107668981,LOC107738156,LOC107706370 coding upstream 157735 17518812 ~ 17524769 (+)
sdr39u1 sdr39u1,LOC107668982,LOC107738159,LOC107557702,LOC107659398,LOC107591428,LOC107706372,LOC107579374 coding upstream 170689 17508786 ~ 17511815 (+)
ltb4r2b LOC107668991,LOC107738160,LOC107706371,LOC107659397 coding upstream 176382 17501343 ~ 17506122 (+)
si:rp71-1g18.13 si:rp71-1g18.13,LOC107668936,LOC107738148,LOC107591365,LOC107706363,LOC107659381,LOC107557749 coding downstream 449 17687841 ~ 17694911 (+)
dcaf8 dcaf8,LOC107706361,LOC107738146,LOC107668937,LOC107659382 coding downstream 12915 17700307 ~ 17709682 (+)
LOC122361465 LOC107591375,LOC107668940,LOC107557836 coding downstream 22442 17709834 ~ 17714790 (+)
casq1a casq1a,LOC107557893,LOC107668994,LOC107591453,LOC107706356,LOC107738147,LOC107704281 coding downstream 36378 17723770 ~ 17734149 (+)
si:rp71-1g18.1 LOC107668953,LOC107591378,LOC107704280,LOC107706321,LOC107738144,LOC107559183 coding downstream 46897 17734289 ~ 17738681 (+)
G13112 cbln10,LOC107738246,LOC107591369,LOC107668921 non-coding upstream 4122 17676072 ~ 17678382 (+)
LOC122357958 NA non-coding upstream 70404 17610150 ~ 17612100 (+)
G13049 LOC107738153,LOC107668935,LOC107591359 non-coding upstream 153114 17527177 ~ 17529390 (+)
G13076 NA non-coding upstream 202010 17480223 ~ 17480494 (+)
G13075 NA non-coding upstream 202402 17479724 ~ 17480102 (+)
G13121 NA non-coding downstream 12197 17699589 ~ 17699825 (+)
G13101 LOC107591379,LOC107668986,LOC107704284,LOC107557939,LOC107738140,LOC103040079,LOC108438942 non-coding downstream 18604 17705996 ~ 17768737 (+)
G13175 LOC107694667,LOC107706287,LOC107558053 non-coding downstream 192167 17879559 ~ 17881219 (+)
LOC122324202 NA non-coding downstream 197378 17884770 ~ 17886098 (+)
G13380 NA non-coding downstream 374178 18061570 ~ 18065663 (+)
G13111 LOC107738210,LOC107591364 other upstream 74412 17607252 ~ 17608092 (+)
G13114 tep1,LOC107591368,LOC107706362,LOC107659385,LOC107738210,LOC107591364,LOC107738151 other upstream 114588 17566841 ~ 17567916 (+)
sppl2 sppl2,LOC107738168,LOC107706381,LOC107591351,LOC107659410,LOC107668984 other upstream 313402 17362245 ~ 17369102 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other upstream 642601 17032139 ~ 17039903 (+)
LOC122361622 NA other upstream 906153 16724614 ~ 16776351 (+)
LOC122325453 LOC107668965 other downstream 91947 17779339 ~ 17782364 (+)
G13137 NA other downstream 96787 17784179 ~ 17816764 (+)
nedd8l nedd8l,LOC107591390,LOC104949953,LOC104931181,LOC107559219 other downstream 182866 17870258 ~ 17871416 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other downstream 451252 18138644 ~ 18162142 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other downstream 2728811 20416203 ~ 20429348 (+)

Expression


Co-expression Network