lrrc8da (lrrc8d,lrrc8da,LOC107722644,LOC107585666,LOC107718115,LOC107691468,LOC107589846,LOC107722505)


Basic Information

Item Value
gene id lrrc8da
gene name lrrc8d,lrrc8da,LOC107722644,LOC107585666,LOC107718115,LOC107691468,LOC107589846,LOC107722505
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10108131 ~ 10113585 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258518.1
TTCCTCTTTTCAAACTGGCTGAAActtgatgaaaaaacaaaacaaaacatttggtTAAGTAACCAAGACATTTCCTGCACACGTTGCCAACCGAATATTACTCCATCATGTAAGCATCTGGGTCCTAGTTTcctcataataataaaaaaggaagaataaaagaaaagtatataaaaaaacagtgatCTGGGTTAGtgttaataattacataattacgcCTGTCAGTactataatatttcacatactccacctatttttaaaaaaacaactttaccTAAAACCCTGCTTTGTGTGCTGGGCGCGTCTGCTGCTCTAAAAGCCTTTTTGGTGATATTTCACCTTTATCCAGCGCTTTCATAAACGCGGCGCTGTCCGCGTCCAATGAACACGCAGCTGACGAACGGAACAGCTCCGTCATCTTGACTGCTGAACTACAAGTCGTAGCAGGTCGGACAAAGAATCGCATTTTTTAACCTCCAGCCGAAGTCAGACTGCTCTGGACGGCGCGTGCAGCGCGTGAAGGACACCGCGTTGTTATGCTGAAACCGAGACTGTTTGGTGGCGATTATACGTTTGACTTTTGTAGTCCGTTTCCTGCTCAGCGACAACTTTTGACAAATCTAGCGTGTAAAGCAATATGACAATCAAGATAAGGACAGCGCGCGCTCTTCCATCCCTCTGAAAAACAGCATAGAGACAGGATGTTTAGTCTAACTGAAGTTGCCTCCCTTAATGACATCCAGCCGAACTACCGTATTCTGAAACCATGGTGGGATGTGTTCATGGACTACATTGGAGTAATAATGTTGATGTTAGCCATCTTTTCTGGAACTATGCAGTTATCTAAAGATCAAGTGGCGTGTCTTCCCATTCTTGAGGAAAGCATTAACCCCGAGGCAGCACTAGAATGTTCCACACCAGATCTGGCCACCACGCCCTCAGAAACCAGAGACCTTCCTGACAGTGTTGCACATGAGCTCCTTAACACTCAACCTACCCCTTTAAAAGGTGAAGATAGGTGGTCTCAACCTCAACCCAGAGGACGAAAAACAAATCTGGACTATCAGCAGTACGTTTTTGTCAACCAAAAGTGCTACCATGATGCCCTACCATGGTACAACAAATACTTCCCTTACCTTGCTCTCATACACACCATAATGCTAATGGTAAGCAGCAATTTTTGGTTCAAGTACCCAAAGACCAGCTCAAAGATTGAACACTTTGTTTCCATTTTGGGGCGGTGCTTTGAGTCACCTTGGACAACGAAAGCTTTGTCTGAAACCGCGTGTGAAGATTCTGAGGAAAAGCAGAGATTCACAGGGGGTGTGGCTTTCCAGAAACACGTATCCTCGGAGGACAGCAGTCAGTCTACACCTTTGATGGAATCGCCAGCGGTGCATTTTCCAACCGAAAAGCTTATTGCAGAAGCTCCTAGCCTGACCACCTTAGACAAAAAAGATGGAGAACAAGCCAAGGCTCTTTTTGAGAAAGTGCGAAAATTTCGAGTCCACGTAGAAGACAGTGACTTCATCTATAAACTCTACGTGGCTCAGACTGCGATAAAAGCACTTAAGATAATTTTGATCTTGAGCTATACGTCAACATTTGCCTCGAAGATCCGATTCTGCCATATATGTCTACCTAAAATCGAAAGTTTGACTGGGTATGATCAGTTCTTTTGCACTCACAACATGGCATTCATGTTGAGGAAACTTCTTTTCACCTTCATGGCAATGATATGTCTCTATGGACTGGTGTGTTTGTATACTCTCTACTGGCTCTTCAGGAGACCTCTTAAGGAGTACTCTTTTGAAAAAGTCAGAGAAGAAAGTAGCTTTAGTGATATTCCTGatgtcaaaaatgattttgcatttcTACTACACATGGTCGACCAATACGACCAGTTGTACTCCAAACGGTTTGGCGTATTCCTCTCTGAGGTGAGTGAGAACAAACTACGAGAAATAAGCCTTAACCACGAGTGGACATTTGAAAAACTACGTCAGCATGTGACATCCAATGCTCAGGATGAACAAGAACTTCACCTTTTTATGCTGTCAGGACTACCTAATGCCGTATTTGACCTCACCGATCTGGAAGTCCTGAAGTTAGAGCTTATTCCTGAGGTCAGGATTTCAGCCAAAGTTTCTCAGATGACAAACCTACGAGAACTACATCTACATCACTGCCCCGCAAAAGTCGAACAAACTGCTTTTACTTTTCTCCGCGACCATTTACGATGCCTCCACATTAAGTTTACTGATGTTGCAGAAATCCCACCATGGATTTATCTGTTGAGAAGCCTCAAGGAACTAAATCTGTTTGGGAACTTGAACTCTGAACACAACAAGATGATCGGTTTGGAGTCGCTTAGAGATCTGAGACACTTGAGAACGTTGTACCTCAAAAGCAATCTCAACAAAATACCAACTAATCTAACAGAACTCTCGCCACATCTCACCAAACTGGTGATACACAATGATGGGACTAAAGTACTGGTACTGAACAGTCTGAAGAAGATGACCAGCCTGGTTGATTTGGAGCTCCAGAACTGTGATTTGGAGAGGATCCCACATGCTATCTTTAGCTTGGCTAACCTGCAAGAACTGGATTTGAAGAACAACAATATCCGAACCATTGAGGAGATCATAAGCTTTCAGCACTTGAGGAGACTGATGTGCCTCAAGTTATGGCACAACAAGATCACTGCCATTCCACCATCGATAGGCCTAGTGAAGAGTCTGGAGTCCCTCATTTTCTGTCACAATAAATTGGAGACCCTTCCACCAGCTTTGTTTCATCTGCCCAAACTGAGGCACATTGACCTCAGCCACAATTGCATCTCGAGTATACCAGTGGAGGTTGGACACCTTCACAACCTTCAGCATTTTGCAATCACTGGGAACAAAGTAGAAGTTCTACCTATCCAACTGTTTAAATGTTCCAAACTAAAGGTTTTATGTGTGGGTCATAACAGCATTACTTCCATCCCAGAGGCGATCGGTCAGTTAGTTCAGCTGTCCCATTTAGAGCTCAAAGGGAACTGCTTAGATTGCCTTCCATTCCAGCTTGGCCAGTGTCGCCTTCTTCGGAAAAACCTCCTCTTTGTGGAGGATCACCTTTTCGATACACTGCCTCTGGAGGTCAAGGAAAGTATCAGTAGCGATTAATGGACTGATGGACATTTCAATTCTGTAGAAATTGTCATCAACAATTTGATCTGTAAATGGGCACCAAAGACAGGAAGCAAAATGATGTTGCAAAATGTGACAGGAACATTGCAAACAACCAGTTTGTGTTTGCTTCTGTTTGCAATTTTAGGTTAAATTATTAGGTTATACATGTATATTGTgttatttacagtcatttttgttgtcatattaaatatgcaggctaatgcatattataaagtgcacccaaaaattacaattctgtcattttttttacttgtcatCCCAAACTTGTATGACTACTGTGGAATACAAAAGgagattaacttttttttcttctttaaatttttttgtccattttaatAGGGTCCAAAACAACATCTGACCGCACTGACTTTAACTGTATGGATAAAAACACTACttaattatgacagaattaccatttctgggtgaactatccctttaagtattAGTATTATCCCATTTAACTCCGTAGTtctcatatttttgttttcaaagtgTCTTTCAATGGCAGTTTTCAGGTATTTTCTTTAACTCTTAAACTTAACTTAAAATGCAtcttatgtttctttttttgttttgtgtttatacaACATTAAACGCGTAAATGTATCATGTGCTTTGTTAGATCTGGCCTTTGAGTTTAGTAGCTGCACTTCTCAGCATTTTATACACTCCAGAAGACAAGATCTGACACGACGAAAGATTTGATGAAAGTTCACCTTTTCTCTTTAGCAATATTGCAACACGTTTTTGAGTCTgagaatgtttttgtatttccttTTGTTAAGTGAAGcatattaaatgcttttttgctGTAGCGTGCTGATAAGAGGCATATCAAGGACTGAGAACTGCTAGACTGGGGGAGATGCACACCCTGCATCTCATGATTAGAACCACAGTGACCTTGTAAAGCGGTTTACTTTTGCGCTGTCATTATATCTTAGAAGAAGCCGAACGCTTTTCAAGGAACATCTAGAAAAACGGCCCTTGACGTTCTGTTGTGTAATTACGAATGCcttattttttatgttctctgattaataaatgttgtgtaTGAACATGA

Function

symbol description
lrrc8da Predicted to act upstream of or within ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axis; pancreatic bud; polster; ventral mesenchyme; and yolk syncytial layer. Orthologous to human LRRC8D (leucine rich repeat containing 8 VRAC subunit D).
lrrc8d Enables volume-sensitive anion channel activity. Involved in cellular response to osmotic stress; organic acid transport; and protein hexamerization. Located in cytoplasm and plasma membrane. Is integral component of plasma membrane. Part of ion channel complex.

NR:

description
PREDICTED: leucine-rich repeat-containing protein 8D-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258518.1 True 4260 mRNA 0.41 2 10108131 10113585

Neighbor

gene id symbol gene type direction distance location
sept2 sept2,LOC107722571,LOC107693718 coding downstream 36668 10062763 ~ 10071463 (-)
bokb bokb,LOC107693720,LOC107722584 coding downstream 54688 10049401 ~ 10053443 (-)
zgc:161973 LOC107722582,LOC107693721,LOC107718160,LOC107585707 coding downstream 62251 10040661 ~ 10045880 (-)
kif1ab kif1ab,LOC107722550,LOC107691514,LOC107693723,LOC108432503,LOC107589853 coding downstream 74833 10008346 ~ 10033298 (-)
espnlb espnlb,LOC107691737,LOC107722507,LOC107718163,LOC107580328,LOC107589891 coding downstream 100542 9997644 ~ 10007589 (-)
hs2st1a hs2st1a,hs2st1,LOC107718112,LOC107589844,LOC107691454,LOC107722647,LOC107585633,LOC106598897 coding upstream 32997 10146582 ~ 10158021 (-)
tox tox,LOC107718108,LOC107722616,LOC107585594 coding upstream 109746 10223331 ~ 11062973 (-)
trnak-cuu_1 NA coding upstream 275966 10389551 ~ 10389623 (-)
LOC122359424 mplkip,LOC107722562,LOC107585495,LOC107688429,LOC107718104,LOC107689394,LOC107589834 coding upstream 316209 10429794 ~ 10433121 (-)
inhbab inhbab,LOC107718177,LOC107589832 coding upstream 351724 10465309 ~ 10476229 (-)
G10812 NA non-coding downstream 60758 10046818 ~ 10047373 (-)
G10773 NA non-coding downstream 180294 9926105 ~ 9927837 (-)
G10708 NA non-coding downstream 359391 9748387 ~ 9748740 (-)
G10621 NA non-coding downstream 501936 9605638 ~ 9606195 (-)
G10562 NA non-coding downstream 647047 9457163 ~ 9461084 (-)
G10869 selenof,sep15,LOC107693704,LOC107586130 non-coding upstream 44993 10158578 ~ 10160064 (-)
G10987 NA non-coding upstream 112633 10226218 ~ 10226856 (-)
G11057 NA non-coding upstream 552892 10666477 ~ 10666712 (-)
G11064 rpp40,LOC107722637,LOC107688445,LOC107689405 non-coding upstream 554057 10667642 ~ 10668967 (-)
G11063 rpp40,LOC107688445,LOC107722637,LOC107689405 non-coding upstream 555477 10669062 ~ 10669414 (-)
hfm1 hfm1,LOC107722645,LOC107586144 other downstream 12274 10080182 ~ 10095857 (-)
si:ch211-267e7.3 si:ch211-267e7.3,LOC107722581,LOC107594654,LOC107718186,LOC107589917,LOC107677774,LOC107693699 other downstream 489658 9606323 ~ 9618473 (-)
plppr5a plppr5,plppr5a,LOC107722655,LOC107693754,LOC107677753,LOC107589876,LOC108441579,LOC107718169 other downstream 588350 9491563 ~ 9519781 (-)
abca4b abca4,abca4b,LOC107564534,LOC107680047,LOC107745690 other downstream 898090 9182056 ~ 9210041 (-)
zfyve9a LOC107700554,LOC107563295,LOC107677579,LOC107553256,LOC107732202 other downstream 1680227 8403327 ~ 8427904 (-)
pkn2a pkn2,LOC107693716,LOC107585639,LOC107722607,LOC107718113,LOC107691687 other upstream 6388 10119973 ~ 10139585 (-)
lmo4 LOC107722609,LOC107693715,LOC107691760,LOC107589910 other upstream 27350 10140935 ~ 10143709 (-)
ca8 ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC107722503,LOC102778484 other upstream 200448 10314033 ~ 10320403 (-)
G11011 chd7,LOC107585562,LOC107722533,LOC107688517,LOC107718105,LOC107589837,LOC107689390 other upstream 262478 10376063 ~ 10378211 (-)
fbxl7 fbxl7,LOC107718179,LOC107689422,LOC107688519,LOC107589836,LOC107722558,LOC107585539 other upstream 279097 10392682 ~ 10421475 (-)

Expression


Co-expression Network