nlrp1


Basic Information

Item Value
gene id nlrp1
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21818882 ~ 21827232 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259004.1
GCTTCGTCGCGGGGAGTGGATCAGTTGTTCATCGTGTTTTCCCGACGTATCGTGACAGGACGTGGAGTGCTTAAGGAACATAGGATTGTTTCACAAATTCTCATCGGAAGAACGTAAAAAGAACGATCTGCCTGAATTGGTGGAGAAAggcatgaagaaagaaaaacaaggtcCTTGTTACGTGTTATCTGAAGACAGGTGGACTGAGAAACCGAGGAAATCTCAAGATTCAAAGATAAAAGGAGAAGCTTACATCAGATGCATGGCTGCTTCTTGTGATGTCATTGACTTTGACAAATTTGAGTTACAAAGTTTAACAAATGTTCAACTCAAACATGACATAGGAAGTGAGGTGATGCCAATAAGCAGAAGAGAGCAGAGCAACATGGTCCGTCAGTACAAGTCTTCAGTTATTGACAGGTTTAAGTTTGTAACAGAGTATAATCTTCCATCTGATGAACTTGTGGATCTGGCCGCCCGATATACTGAGCCAATGATCATTCAGAGGAGCAAAGATCAAACTGAGAAATACTATCAGGAGAATGTGAGGTCTGTGGATGCTTTATCTCATCTGTTATCAAATGACAAGAGTCACAGCGTCAGAATAGACCAGCTGTTCAGTCCTGACTGTGATGGAAACAGACCAAAAACTGTGATTCTCAGTGGAGATTCTGGAAGAGGGAAATCCTTCATGTTACAGAAGATCATGTTGGACTGGGCTTCTGGAGAGCTCTACTCTGAAAACTTTGATGcagtttttcttctgaaatgtgAAGAGCTGAAATGTGTTTCTGAAGAGATGAGCTTATTTGAGCTCTTGAGCTGGGGTTGCAGTTTAACATCAGATCAGATCTTACAGATATTACAGTTTACACCAGAGAAAGTCCTCATCCTCATTGATGGAATGGATGAGTATATATCTTGTCCACCCATTCACTTCTTGTTACTACACACTAATCCATTCAAGAGAGCGCCACCTATGGTCATTCTTAGGAACTTGTTTAGAAGATTCTTGCTGCCTGAGTCATTCATGCTTGTCACCACAAGATCTGTAGCTGCTAATGCGCTGATGAATCTCCTCAAGAGTCCTCAGCGTTTCACTGAGATTATGGGCTTCTCTGAGAGAGGAGTGCAGAAGTACTTCCAGAAGTTCTTTCAGGATGAGCAGCTCTTCAGGAAAACATACGATAGCGTGAAGACTAATGAAAGCCTCCTGACTGCCTGCTCTGTGCCTTTTCTGTGTTGGATGGTCTGTGCTTGTCTGAAGAAACACGTTACAGATGATGATCATGTAATGAAAGAACTAAAGACAACCACCTCCATATATGTACACTTTGTGTCCACTCTACTGGATCATCATCATGACCAGAGTCTGTCTGTCCTCACCATGCTGAGGAGTCTGGGTCAACTGGCAGAGGAAGGGAAGAAGAACCGTCTGGTGTTTTTTGATTATAAGGATGTAGCCAAGACTGGTTTAGATCCAGCTACTGTTTTGTTCTTGTATAAAGATGATTTCAGAGGCAAAAAAACCAGACCAATTTTCAAGTTTATCCATTTCAGCTTTCAGGAGTTCTTTGCTGCgctttattgtgttttgctGGATGAGGAAGAGCCCTGGTGGAAACTCAGTGAGCGGTTTATCCTGATGGATTCAGAAGCTATAATTTACAGGTCGTCTCCTATTTCGAGACTTAGACTATCAAATACCATCCCTTCAGTCATGATGTTTCTCTGtggttttttaaataagaagaCGACAAGCTCAATCTTTGAAACGATCAAGTGGACTGTTCCTCAAATcaccaaactgaaaaaaaggcaACTAAAGAAAAAGCTGGCAAAACGGATTCCTGCAATGACACGGCAGTATGAATTAGAGTTATTTGCTCTCCACTGTCTGTATGAGCTCCAGGATGAAAGATTTGTCAGGGAAGCTTTGAACAAACACAGGTTCATGAACCTGTCTAACATTTCTCTGAGGAGCACAGACTGTCGTGTGCTGCTGTACTGTCTTCAGTGCTGTCCACACATCAGAGACCTGAACCTCATGAACTGTGATTTAACAGCTGAGAAACTCAAGATTCTTCAGCCAGCACTCTGTATGTGTAAGACTCTAagGTTGTCAGTAGATCATCTGTCAGAAGTTGGAAATTTGATCCGGATTGTTGGTGAAGGAAAAATCTTGCGAGAGCTACAAGTTCAGGAGGATGAATACAGTCCTGAGAGTCCCAGATGGTCACTTAACCTTTCAGTCTCTGGTGGAGATGTCTCCTTGTCTTTGAGCTCATCTGAGAAGAATCCATAATTTCCAGCAGTATTAAACATCAGTCTTACATGTCCACAATCAGAGATATCCAACACTGACTGGACACTCTTCTTACAGAGACTCAGCAGGGCAGGAAAAGTTGCAGAAGaCTCTTCAGCTCTTGATGAGCATATCAGTTTGCTGCTGTCCTCTTTTCACTCTGTGGGTTTGAAGACGTTTGACCTGAAGCTGGTCAGTCTGAATAAAAACTGGGCTTCTGGGATCACTTCCCTCATCCAGACCTGCACCAGTCTACACAAGCTCAGTGTCAATGTCACCGGATTGCTTTTGGAGGAGGGACTCATTTTACTGAAGAAATCACTGGAAGATCCACACTGCGCTGTGAACATTGAAGGGTGGAAATGCAGTAAACCCACTGACCAGTGCAAAGGACAGGACTGGAGTCAGAGCTGTAATGACAAAGTGGAGATTCACTTCAAACCAAAGGTTTTGGGAAAGCTGAGAGAATTGAACATCTCTGAACCATCTGCCATGAATCTTTATTGTCAGTCTTGTATTCACATTGTTGACTCTGATCAGTGGGTTCAAGTGGAGCCGTCAGTCTGTACAGATGAAGGAGGCTCAGAGTTCAGGATCAGCACTCCGGCGGGTCGATTCGAGTGCAGCAGGACCAGAATGCGATGGGTCTGTGCTGGTGACGTCACTCTCCAGTACCGTGCAGTGGATGGAGGTTTCCTCAGAGCAGAGCTGGAGAGGCTTCGGTGTGAGAGAATCGGTCCTGTGATTGATGTGACGGTGATCTCAGGGAAACTGGAGGAGGCCCATCTGCCTCATTATGCCTGTTTAGCAGAGTCGGATCCTTCCCTCAGAGATGATGTAAAGGTCCTCAGTGTTGAAGAAGAAGGAATATCTTTGGAATCGGTGGAGTTGACTCGTTTTCATGCCAAATTAATCCAGCCATATTTTTCTCCTAAAACGGTGCTTATGAAATTAGGGTTACCAGTGAAAGTGCACTGTGATCTACTGATCTTCATGACACAAAAGAACCCCATCATTCTCCATGTGTATTTTTTCCCATCTGattcactttttaaagaaaagattaaaacagaagaaaaatgttgtcatcAAATTAAATGTTCGAGACCTGAAACCCCACTGCAGATGATGAAACAACACAGTCTTGAGGTTCCTGGTGCTTCTGTCCAACCTGAAGAGATCAAACTAAGAGGAGACGTCGATCCAAACTTCTTTCAGGTGAAACATCCTGTGGTCGATGACATCAAAATGTCTCTCAGTCGAGTGGATGATCAGAAATCAGTTTGGACTGCAACAATTTGGAAAGAATTAATCAACATTCACCCAAACAGGACTGAGGCCTTGTTTGTAACGCgacaaaaccaaaatacacCACAATTAGCTGTCAGCTTTGATAAAGTTCAGTTTTTTGATAGAAACTGGTGTGCTCTTATTAAAAGTGTTGAGAATGTGAATAAAATTGCAGACAAACTGCTTCAGAAGCAAATCATTCATGAAGAATTATATTCTGCAATCACACGTCCTACTTCAACCAGTGAAGCCAGCATGAGGAAGATCTGTAGCGTAGTGCGTAAAGGTAGTGACACTGTGAAAGAAATGTTCATCTCCATTCTTCTGAAAGAAGTTCCCGACCTTTTAAATCATCTTCCTTTACCTGACTCTTAACAACTTTTGCTTGGAGACTCTATGTtgtgttttacatgttttgacAAATAACATGTAAACTACAATGCTCCCTAAAGTAATATACTGGAGTTTTTAGAGAAATCAATTTTAGcaaatcaatcaaacaatcacttttattcatgTAGCACTTTTACCAATAcagattgttttaaagcaatgaacagtataaaataggagaTAGTAaagtataatgacaagattaaacacttaatttttattaaatgcagttggtctgtgtaatcaaatgaatggtaatcgctagaaattaagtgtccccaaataagcaaacaagaggcgacagtggcaaggaaccaaaatcccatctgtggaggaaaaaaaaaaaacctgggaGAAACCTGGCTCAGTTGAGGCCAGTTCTCCTGAACCGGATAACCAGCACTTAattttcagttcaattttaaacacagctctGTCATATTGTGTAAAGGACTTCATGTGTGTGAATCATATTCCCTTTTGAAGAACATTCAAATCCTCTGCtcacctttaaaaatgaaaggagAACAAATGTTGCAGTATATTTTCCTGTTTGATAACACTGAAcgcaaaatatttctttaaaggtttatttCTATACAGTTGTGTTGTTGTAATACTTAACAGTGGCATATCCTTGGAAGAACTCCGCATTTGCCATTGTGATGAACTTATGGCTGAGCGCAGACATTTCACTCATGTTGGATGTGTCAGTTTCACATTTGCATAGGCCACATTATTTGAATTCATGACTGGTAGATGgggtaataaaataaagttattagcCAGTTACTGGCTATTCAAAAGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259004.1 True 4798 mRNA 0.41 12 21818882 21827232

Neighbor

gene id symbol gene type direction distance location
wdr47a wdr47,wdr47a,LOC107749106,LOC107730459,LOC108428282 coding upstream 9550 21794688 ~ 21809332 (+)
camsap2b camsap2b,LOC107749095,LOC107730450,LOC107692873,LOC107660032 coding upstream 25292 21754405 ~ 21793590 (+)
LOC122355713 LOC107578657,LOC107730436,LOC107692891,LOC107692896 coding upstream 113988 21702091 ~ 21704894 (+)
LOC122328123 LOC107730432,LOC107749146,LOC107600057,LOC107660295,LOC100536708 coding upstream 131311 21682031 ~ 21687571 (+)
chrng chrng,LOC107600056,LOC107749123,LOC107660019,LOC107692884,LOC107557864 coding upstream 136994 21676444 ~ 21681888 (+)
fndc7rs1 NA coding downstream 69444 21896676 ~ 21911669 (+)
trnam-cau_1 NA coding downstream 101515 21928747 ~ 21928819 (+)
gpc5c gpc5c,LOC107749179,LOC107660087,LOC107671592,LOC107730460 coding downstream 102065 21929297 ~ 22026087 (+)
gpc1b gpc1b,LOC107660106,LOC107749182,LOC107730456,LOC107549820,LOC107600088,LOC107671591 coding downstream 217636 22044868 ~ 22105101 (+)
LOC122324242 ephb1,LOC107549839,LOC107671589,LOC108430182,LOC106599529,LOC103359190 coding downstream 307122 22134354 ~ 22326172 (+)
LOC122359002 NA non-coding upstream 5979 21810929 ~ 21812903 (+)
G14316 NA non-coding upstream 98307 21719918 ~ 21720575 (+)
G14315 NA non-coding upstream 100890 21716771 ~ 21717992 (+)
G14285 NA non-coding upstream 261484 21556844 ~ 21557398 (+)
G14212 LOC107557873,LOC107721701 non-coding upstream 448383 21365808 ~ 21370499 (+)
G14476 NA non-coding downstream 67376 21894608 ~ 21895131 (+)
G14477 NA non-coding downstream 67939 21895171 ~ 21895478 (+)
G14484 LOC107568745 non-coding downstream 86288 21913520 ~ 21915028 (+)
G14532 NA non-coding downstream 640628 22467860 ~ 22472603 (+)
G14535 NA non-coding downstream 648549 22475781 ~ 22476202 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other upstream 102592 21714683 ~ 21716290 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other upstream 197785 21533245 ~ 21621097 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other upstream 336240 21481134 ~ 21482642 (+)
G14211 NA other upstream 457174 21307407 ~ 21361708 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other upstream 654060 21163942 ~ 21164822 (+)
LOC122327294 aknad1,LOC107749213,LOC107660326,LOC107730428,LOC107671582 other downstream 16343 21843575 ~ 21853007 (+)
fndc7a fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736 other downstream 29980 21857212 ~ 21867399 (+)
G14471 NA other downstream 33659 21860891 ~ 21861442 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other downstream 634684 22461916 ~ 22485655 (+)
LOC122327931 NA other downstream 806297 22633529 ~ 22674275 (+)

Expression


Co-expression Network