LOC122359068 (itgb1b,LOC107749113,LOC107563813,LOC107659805,LOC107690578)


Basic Information

Item Value
gene id LOC122359068
gene name itgb1b,LOC107749113,LOC107563813,LOC107659805,LOC107690578
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21099685 ~ 21115999 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259199.1
AGAGGCTCTGCCACTGCAAACCCATCTCGCAGTCCAGACCCCCAGACCCGCAAGCATTAGCCATCCGGACCGAGGACACGCCGGGGATCGGCGAACTGGACTCTTTACCAACAGCACAGTTACCTGCCCCTTTGTTAGTTATAGTCAAGGGAATCGCGTGCTTTAGTACTTTGTAACCAGCTGTTGATTCAAAGTAGCCCACGGAAACAAAGACTCCACAGACACGGGCGAGCAACTGGACTGGTGGACCAAACGCTGCCGGAGGTTTATTTCCATAGCAAATGTGGTTTTAAAGAACAACCGATAGCTTGATAAATCGCCGGGGACACGTGTTAAGatGGATGTGAGGCTGCTCCTGATTTCAGTTCTTCTGGGACTCAGCAGGGCACAGCTAGatGGTAACGAATGCACCAAAGCCTCGGCCCAGTCTTGTGGAGAATGCATTCAGGCCGGAGAAAAGTGTGGCTGGTGTACAGACGAGGACTTTCTAAAACAGGGAGAGCAAAAGTCCACACGGTGTGATGAGATTGAAGCTCTGATTAAGAAAGGCTGTTCTAAAGCGAGCATAGAAGATCCTCGAGGAACTGTTACTGTCAACAAGAACCAGTCTTTAACAGAACGCCCAAAGGATGGAGTAAAACTGAAGCCAGACCAGATCACACAAATTCAACCACAGAAACTCACCCTAAACCTCCGTTCAGGTGAAGCTCAGAAGTTCAAGCTGACATTCAAGAGGGCCGAGGATTATCCCATAGATCTCTACTACCTGATGGACCTCAGCTACTCGATGAAAGACGATTTAGAGAACATCAAAAAACTGGGAACCGACCTTATgttggaaatgcaaaagatcACATCCGACTTCAGGATTGGCTTTGGCTCCTTTGTGGAGAAAACCGTCATGCCGTACATCAGCACGACACCAGCCAAGCTGCTAAACCCCTGCTCATCAGATCAGAACTGCACCAGCCCATTCAGCTATAAAAATGTGCTGAGTTTGACTGCCGATGGAAGACAGTTTAATGACCTTGTGAGCAGACAGCAGATCTCAGGAAACCTGGATTCACCAGAGGGAGGGTTCGACGCCATCATGCAAGTGGCTGTCTGTGCGAACCAGATTGGCTGGAGGAATGTTACCCGTCTGCTAGTGTTTTCCACGGATGCTGGATTCCACTTTGCTGGAGACGGAAAACTGGGCGGCATCGTGCTTCCTAATGACGGGAAATGCCATCTGCAGGATAACATGTACACTATGAGCCATTActatGACTATCCTTCGATCGCACATCTGGTTCAGAAATTAAGCGAAAACAACATTCAGACCATTTTTGCTGTAACTGAAGAGTTCCAGCCTGTTTACCAGGAGCTGAAAAACCTTATTCCAAAGTCAGCTGTGGGAACGCTATCCTCTGACTCCGGCAATGTGATAAAACTCATTATTGATGCATATAATTCTCTGTCTTCCGAGATCATTCTGGAGAACAGTAGGCTCCCAGAAGGTGTGTCTATCTCCTACATCTCCCACTGCAAGAACGGAGTGAGCGAGAAGGGAGAAAATGGGAGAAAGTGCTCCAACATCTCCATTGGGGATCAGGTGACTTTTGAGGTAGCGGTCACGGCTAAAGGCTGTCCATCTAATGGCAAATCAGAGACTATAAAGATCAAGCCGCTTGGCTTCACCGAGGAGGTGGAGATCGTCCTCAACTTCATCTGTGAATGCGAGTGTCATAAAAAGGGAATCCCAAACAGCCCAGTGTGTCACTTTGGCAACGGTACTCTGGAGTGTGGAGCATGCAGGTGCAATGAGGGACGTATTGGCAGAGTATGTGAATGTAGTAAAGATGAGGTCAGAACAGAAGATCTGGACGCAAACTGCCGCATGGATAACGGGACGGACATCTGCAGCAACAATGGAGACTGCGTGTGTGGAACGTGTGAGTGCAAGAAAAGAGACAACCCAGAGGAGAGGTACAGCGGAAAGTTCTGCGAATGTGACAACTTCAACTGCGACCGCTCTAACAACATGCTCTGCGGAGGTCACGGTCGCTGTGAGTGTCGAAAGTGTATCTGTGATGCTAACTACACAGGAAGTGCTTGCGACTGCTCTTTGGACACCTCAACCTGTCTGGCCAGTAACAAACAGATCTGTAACGGTCGGGGCACCTGCGAGTGCGGCGCGTGTAAATGTACGGATACAAAGTTTCAGGGTCCAACCTGTGAAATCTGCCCAACCTGCCCTGGAGTTTGTACCGAGCACAAGGATTGCGTCCAGTGCAGAGCATTTAAAACCAGCGAAAAGAACGACATGTGTGACATAGAATGTAATTACTTCACACTTAAAAAGGTGAAGAAGAAGGAGGATCTTCCTCAGCCCAACGACCAGCCCTACATCAATCACTGCAAGGAGCGAGACGCTAACGACTGTTGGTTCTTCTTCACCTACGCTACCAAGAACGACAGCAGCGTTGAGGTCCATGTAGCAGATGAGCTTGAGTGTCCCTCTGGCCCTGACATCATTCCTATCGTAGCGGGTGTGGTCGCCGGAATCGTTCTGATTGGTTTAGCACTTCTGCTCATCTGGAAGCTGCTCATGATTATTCACGACCGCAGAGAGTTCGCCAAGTTCGAGAAAGAGAAGATGAATGCCAAGTGGGATGCGCAAGAGAACCCAATATACAAGAGCCCCATTAATAAATTCCAGAATCCAGGTTATGGAAATAAGGGCGTCACACTCTGAGGAGAGAACCCCATTTACAAGAGTGCTGTGACGACGGTGGTCAACCCTAAATACGAGGGCAAGTAATGGATGAGCCTGTCCATCTTCAAGCAACACTGTATGCAGAACAATTCAAGAGAAACTGAAGAGTTGAAGTCCACTTtgttaattttctctttttgtgtgtgtgttttgaaatcACATTTTGGCCGTGCATTTGCCACTGTTCAGTATAATCTATTAACCTGTGTTTCTATGCATCGTTCTGAAactgtacagtatgtataaacttgagtttttacttttttatgcaaTCTTAGACAATAATTTCAATGTCCACATTTGATTTTTAGCCACAGATCTGCTTTGTCTTTTGAATGTTAAAACTGATCATGTTGGGTTAGATGACAGGTTATAATGTGGTCAAGTATGCATGAAGAACGAATATCCACAAAGACTAGACTGGTTGCTCTTTAGAGCCAGTTTTGTGTCTTATGGTGGTACAGGAATCTTTCTGAACCTGTGGATGGAGTGTCCTGTCACTGGTATAGTAGGTAGCTGTAGCGGACCACTGCTGTTTGTACACATGGTGCTTTTCATGGAGACGCTTATGTTGTCTGCATAATCCTGGATGATTTGAGTCCAGATTCTAATGTTTAGGTCTGTGCGACTGTTTCTTTGGTCCGCGCGTCAGATGGTTTATTGTGCACATTGATTTTAATGAATCTAAAACGGACAGGTTTAGtatctttttaattatataatacaaaaaaaaatgtacatttgttgtAATTTCAGCTGCCGGGTGTTTGATTGAAATGCCTTTGACTTGGCAACATCTGAGTTATTAGAGggacattttcatatttgtctGTGAATGGAACAAtcacctttattattattattgtaattgaaaACATGAGTGTAAACTCGTATGAAAAGATCTTCAGGTTTTAGATTTGTTTGAAGAATGGGGAAATGAAAACTCAGGTCCTGAATTTCTCTCTTATCACTGATGCCAAATATTTACGTCTACTGTGCAAGAACTATATTCCAGATGTGGATTCACAtttgattttgtaatttaatttgtcccTTTGTAACATCATTGTTCGTAAATGAGACTAACTGCTCAGATAGTTGTTGGTGAAGATCAGTGTTAAAGAAAGAtaacttgttttctttccttttcaatcaactttttttttttaatctccaaagcttttaaaagcttaatcatgttacatacacacattgcattttaaagtgcctttttcatttttttatttttgcatcatgCCCACTGTCTTTTGTCTCTAggagttatttattaaaataaacaacccAAAACACTGGA
>XM_043259209.1
AGGCTCTGCCACTGCAAACCCATCTCGCAGTCCAGACCCCCAGACCCGCAAGCATTAGCCATCCGGACCGAGGACACGCCGGGGATCGGCGAACTGGACTCTTTACCAACAGCACAGTTACCTGCCCCTTTGTTAGTTATAGTCAAGGGAATCGCGTGCTTTAGTACTTTGTAACCAGCTGTTGATTCAAAGTAGCCCACGGAAACAAAGACTCCACAGACACGGGCGAGCAACTGGACTGGTGGACCAAACGCTGCCGGAGGTTTATTTCCATAGCAAATGTGGTTTTAAAGAACAACCGATAGCTTGATAAATCGCCGGGGACACGTGTTAAGatGGATGTGAGGCTGCTCCTGATTTCAGTTCTTCTGGGACTCAGCAGGGCACAGCTAGatGGTAACGAATGCACCAAAGCCTCGGCCCAGTCTTGTGGAGAATGCATTCAGGCCGGAGAAAAGTGTGGCTGGTGTACAGACGAGGACTTTCTAAAACAGGGAGAGCAAAAGTCCACACGGTGTGATGAGATTGAAGCTCTGATTAAGAAAGGCTGTTCTAAAGCGAGCATAGAAGATCCTCGAGGAACTGTTACTGTCAACAAGAACCAGTCTTTAACAGAACGCCCAAAGGATGGAGTAAAACTGAAGCCAGACCAGATCACACAAATTCAACCACAGAAACTCACCCTAAACCTCCGTTCAGGTGAAGCTCAGAAGTTCAAGCTGACATTCAAGAGGGCCGAGGATTATCCCATAGATCTCTACTACCTGATGGACCTCAGCTACTCGATGAAAGACGATTTAGAGAACATCAAAAAACTGGGAACCGACCTTATgttggaaatgcaaaagatcACATCCGACTTCAGGATTGGCTTTGGCTCCTTTGTGGAGAAAACCGTCATGCCGTACATCAGCACGACACCAGCCAAGCTGCTAAACCCCTGCTCATCAGATCAGAACTGCACCAGCCCATTCAGCTATAAAAATGTGCTGAGTTTGACTGCCGATGGAAGACAGTTTAATGACCTTGTGAGCAGACAGCAGATCTCAGGAAACCTGGATTCACCAGAGGGAGGGTTCGACGCCATCATGCAAGTGGCTGTCTGTGCGAACCAGATTGGCTGGAGGAATGTTACCCGTCTGCTAGTGTTTTCCACGGATGCTGGATTCCACTTTGCTGGAGACGGAAAACTGGGCGGCATCGTGCTTCCTAATGACGGGAAATGCCATCTGCAGGATAACATGTACACTATGAGCCATTActatGACTATCCTTCGATCGCACATCTGGTTCAGAAATTAAGCGAAAACAACATTCAGACCATTTTTGCTGTAACTGAAGAGTTCCAGCCTGTTTACCAGGAGCTGAAAAACCTTATTCCAAAGTCAGCTGTGGGAACGCTATCCTCTGACTCCGGCAATGTGATAAAACTCATTATTGATGCATATAATTCTCTGTCTTCCGAGATCATTCTGGAGAACAGTAGGCTCCCAGAAGGTGTGTCTATCTCCTACATCTCCCACTGCAAGAACGGAGTGAGCGAGAAGGGAGAAAATGGGAGAAAGTGCTCCAACATCTCCATTGGGGATCAGGTGACTTTTGAGGTAGCGGTCACGGCTAAAGGCTGTCCATCTAATGGCAAATCAGAGACTATAAAGATCAAGCCGCTTGGCTTCACCGAGGAGGTGGAGATCGTCCTCAACTTCATCTGTGAATGCGAGTGTCATAAAAAGGGAATCCCAAACAGCCCAGTGTGTCACTTTGGCAACGGTACTCTGGAGTGTGGAGCATGCAGGTGCAATGAGGGACGTATTGGCAGAGTATGTGAATGTAGTAAAGATGAGGTCAGAACAGAAGATCTGGACGCAAACTGCCGCATGGATAACGGGACGGACATCTGCAGCAACAATGGAGACTGCGTGTGTGGAACGTGTGAGTGCAAGAAAAGAGACAACCCAGAGGAGAGGTACAGCGGAAAGTTCTGCGAATGTGACAACTTCAACTGCGACCGCTCTAACAACATGCTCTGCGGAGGTCACGGTCGCTGTGAGTGTCGAAAGTGTATCTGTGATGCTAACTACACAGGAAGTGCTTGCGACTGCTCTTTGGACACCTCAACCTGTCTGGCCAGTAACAAACAGATCTGTAACGGTCGGGGCACCTGCGAGTGCGGCGCGTGTAAATGTACGGATACAAAGTTTCAGGGTCCAACCTGTGAAATCTGCCCAACCTGCCCTGGAGTTTGTACCGAGCACAAGGATTGCGTCCAGTGCAGAGCATTTAAAACCAGCGAAAAGAACGACATGTGTGACATAGAATGTAATTACTTCACACTTAAAAAGGTGAAGAAGAAGGAGGATCTTCCTCAGCCCAACGACCAGCCCTACATCAATCACTGCAAGGAGCGAGACGCTAACGACTGTTGGTTCTTCTTCACCTACGCTACCAAGAACGACAGCAGCGTTGAGGTCCATGTAGCAGATGAGCTTGAGTGTCCCTCTGGCCCTGACATCATTCCTATCGTAGCGGGTGTGGTCGCCGGAATCGTTCTGATTGGTTTAGCACTTCTGCTCATCTGGAAGCTGCTCATGATTATTCACGACCGCAGAGAGTTCGCCAAGTTCGAGAAAGAGAAGATGAATGCCAAGTGGGATGCGGGAGAGAACCCCATTTACAAGAGTGCTGTGACGACGGTGGTCAACCCTAAATACGAGGGCAAGTAATGGATGAGCCTGTCCATCTTCAAGCAACACTGTATGCAGAACAATTCAAGAGAAACTGAAGAGTTGAAGTCCACTTtgttaattttctctttttgtgtgtgtgttttgaaatcACATTTTGGCCGTGCATTTGCCACTGTTCAGTATAATCTATTAACCTGTGTTTCTATGCATCGTTCTGAAactgtacagtatgtataaacttgagtttttacttttttatgcaaTCTTAGACAATAATTTCAATGTCCACATTTGATTTTTAGCCACAGATCTGCTTTGTCTTTTGAATGTTAAAACTGATCATGTTGGGTTAGATGACAGGTTATAATGTGGTCAAGTATGCATGAAGAACGAATATCCACAAAGACTAGACTGGTTGCTCTTTAGAGCCAGTTTTGTGTCTTATGGTGGTACAGGAATCTTTCTGAACCTGTGGATGGAGTGTCCTGTCACTGGTATAGTAGGTAGCTGTAGCGGACCACTGCTGTTTGTACACATGGTGCTTTTCATGGAGACGCTTATGTTGTCTGCATAATCCTGGATGATTTGAGTCCAGATTCTAATGTTTAGGTCTGTGCGACTGTTTCTTTGGTCCGCGCGTCAGATGGTTTATTGTGCACATTGATTTTAATGAATCTAAAACGGACAGGTTTAGtatctttttaattatataatacaaaaaaaaatgtacatttgttgtAATTTCAGCTGCCGGGTGTTTGATTGAAATGCCTTTGACTTGGCAACATCTGAGTTATTAGAGggacattttcatatttgtctGTGAATGGAACAAtcacctttattattattattgtaattgaaaACATGAGTGTAAACTCGTATGAAAAGATCTTCAGGTTTTAGATTTGTTTGAAGAATGGGGAAATGAAAACTCAGGTCCTGAATTTCTCTCTTATCACTGATGCCAAATATTTACGTCTACTGTGCAAGAACTATATTCCAGATGTGGATTCACAtttgattttgtaatttaatttgtcccTTTGTAACATCATTGTTCGTAAATGAGACTAACTGCTCAGATAGTTGTTGGTGAAGATCAGTGTTAAAGAAAGAtaacttgttttctttccttttcaatcaactttttttttttaatctccaaagcttttaaaagcttaatcatgttacatacacacattgcattttaaagtgcctttttcatttttttatttttgcatcatgCCCACTGTCTTTTGTCTCTAggagttatttattaaaataaacaacccAAAACACTGGA

Function

symbol description
itgb1b Enables protein heterodimerization activity. Involved in cell adhesion mediated by integrin and endothelial cell-matrix adhesion via fibronectin. Acts upstream of or within several processes, including Kupffer's vesicle development; cell migration involved in gastrulation; and muscle cell development. Predicted to be located in several cellular components, including lamellipodium; melanosome; and ruffle membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in several structures, including cardiovascular system; digestive system; mesoderm; muscle; and pleuroperitoneal region. Orthologous to human ITGB1 (integrin subunit beta 1).

NR:

description
PREDICTED: integrin beta-1-A-like

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K05719 ITGB1, CD29; integrin beta 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259199.1 True 4073 mRNA 0.44 17 21099685 21115999
XM_043259209.1 False 3993 mRNA 0.44 16 21099687 21115999

Neighbor

gene id symbol gene type direction distance location
LOC122362210 nrp1b,LOC107659377,LOC107749105,LOC107721698,LOC107690577 coding upstream 4120 21073085 ~ 21095565 (+)
pard3ab pard3,LOC107690576,LOC107659281,LOC107557790 coding upstream 55272 20975539 ~ 21044413 (+)
efr3a efr3a,LOC107721726,LOC107749108,LOC107663339 coding upstream 212141 20854977 ~ 20887544 (+)
basp1 basp1 coding upstream 307827 20778714 ~ 20791858 (+)
LOC122357864 NA coding upstream 321632 20772536 ~ 20778053 (+)
itgb1b.2 LOC107749109,LOC107563812 coding downstream 470 21116469 ~ 21122754 (+)
LOC122356829 itgb1b.1,LOC107749109,LOC107563812,LOC107690580,LOC107721729,LOC107660233 coding downstream 7040 21123039 ~ 21130329 (+)
epc1b epc1b,LOC107563811,LOC107690579 coding downstream 15010 21131009 ~ 21145290 (+)
arhgap12a LOC107659443,LOC107749196,LOC107557799 coding downstream 69210 21185209 ~ 21204873 (+)
nlrb5 NA coding downstream 111324 21227323 ~ 21246000 (+)
G13976 NA non-coding upstream 133457 20961693 ~ 20966228 (+)
G13980 NA non-coding upstream 142549 20955935 ~ 20957136 (+)
G13964 NA non-coding upstream 153419 20899564 ~ 20946266 (+)
G13909 gtpbp4,LOC107690210,LOC107721733,LOC107567003 non-coding upstream 482025 20616158 ~ 20617660 (+)
G13863 NA non-coding upstream 504592 20591718 ~ 20595093 (+)
G13992 NA non-coding downstream 32181 21148180 ~ 21148512 (+)
G13993 NA non-coding downstream 33222 21149221 ~ 21150007 (+)
G13994 NA non-coding downstream 34659 21150658 ~ 21151136 (+)
G13995 LOC107749107,LOC107659422,LOC107563825 non-coding downstream 36104 21152103 ~ 21153782 (+)
G13983 kif5b,LOC108232928,LOC106522897,LOC106906931,LOC103138015,LOC106962517,LOC103479480,LOC101155960 non-coding downstream 50089 21166088 ~ 21168887 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other upstream 591294 20493174 ~ 20508391 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other upstream 614467 20481664 ~ 20485218 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other upstream 626161 20467268 ~ 20473524 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other upstream 670337 20416203 ~ 20429348 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other upstream 2937543 18138644 ~ 18162142 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other downstream 47943 21163942 ~ 21164822 (+)
G14211 NA other downstream 191408 21307407 ~ 21361708 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other downstream 365135 21481134 ~ 21482642 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other downstream 417246 21533245 ~ 21621097 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other downstream 598684 21714683 ~ 21716290 (+)

Expression


Co-expression Network