rreb1b (rreb1,LOC107722578,LOC107718094,LOC107689404,LOC107589881)


Basic Information

Item Value
gene id rreb1b
gene name rreb1,LOC107722578,LOC107718094,LOC107689404,LOC107589881
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10625072 ~ 10655849 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259267.1
TTTGCACATCCTCAAATGCGCCATTTTGATCGCTCTCCGGAACaagtttgcagtttttttttttctcgaagTCCCATCATCTCTTTTCACCATCACCATGTCTCGGCGCAGTCAGCCCAACCCCGACAAAGTCAAGCTATGAGCAGAGGTCGCTGTCCCTCATCCTGCGCCCGTGACCCTGTGGCTCCATGACCCTGTGACGTGTTTAGCCCAGACCTTAAAATGGAAATGGAAAGTGCCTCCCCTGAGAAGACTGTCAGCAATGCTGTTGGTGCTGCTGATGTGAATGAACAGTCTCATTTGTCAGAAGATTGTGTGAACGATCAGTCTTCCTCTCACACACCAGAACCCGCTGAAGAAGCAGACTCTGATGGAAAGGACAAGTCAGAGCATGgagatgaagatgaaggtgGAGTTAGAACAGAGGAAGAGCTGTCCTCCATCAACTCTATGATGAGCACTGTGATGAGCGTGGGCCAGATCAATGGAGTTGATTCTGAGCCCACCAAAGTATCTCCTAGAAGTTCAACCAAATCGCCTGCTGTCAATCGTACTGGGAGAAGAAATCAGGAAGTCAAAGACGAACGCTCAAGCTTCATTTGCCCCCTGTGTAACAAAAACTGCATGACACAGCACCAGCTCACCATGCATATCAGACAGcatAACACAGATAGTGGGGGCACTGACCACTCCTGCAGTATCTGTGGGAAGGCTTTGAGCTCAGCCAGTTCTCTGGACCGCCACATGCTGGTTCACAGTGGAGAGAGGCCATACAAGTGTGTGATATGTGGTCAGACTTTCACTACCAATGGAAATATGCACAGGCACATGAAAATTCATGAAAAGGATGCAAACAGTATTCCTACCCCAAGTTCTTCCCCACTAAACAAGCGCAGACGACTCTCTAATAAGAAGAAATCCATTGTAGAGGATGAAGTGGAGCAGGCTGAGGAGCCGCCAGTTAAAAAGGTGATGCTTGTACAAAAGTCTGGAGAGGATGATTCTGTTAAGAGTGAAGAAGACATCTTTCATTGCCCAATCTGCTTTAAGACATTCAACTGTAAATATGATCTGGAAACACACATGGAGATGCATCCTGACACTACACTCAGGTGTAACATTTGTTGCATTACCTTTCGCACACACCGGGGTCTTCTGCGTCATAACGCTGCTATTCATAAGCAGCTCCCTACTGATCCTGGACAACCCTTTATTCAGAATAACCCCTCCATCCCTCTGGGGTTTGGTGACTTGGCTTTCATTGACTTCAGCTGTCAAAAGTTTCCCCAAATTGCACAGGTCTGGTGTGAGACTAATTTGCGCAGATGCTCAAGCAAGTTCCATAAATTTGTCTGTGAGGTCTGCAACAAGGCCTTCCCTCTTCAGCAGTCTCTGGATCTCCACAAATCCTCACACAAAAGTAGCGCAGACACCAGCACTGAACCTCAGGAACATAACGCAGATGGTGTTATGGATGCACCCAAAGTTAACTCCCATTCCACGGATTCTAAGAAGGTCAGTGAACAAGTACCACATGTTGATAGTACCGGTTCAGATGGGAAAAATGGCTTCTTGGAGTGCCTGGGTCTCCAACACTCCTCCTTGGCCAAGCCCGCGAAATCAGAAGAGCAACTTCAACAGGAAGTTTTAGACAGCATTCGCTTCATTCGCATTGAGCCACCTTCAACTAATCTACCTCAAGATAGCAGCAACAATCTCGGTGTCTCAACTTTGGAGCCTGTCTCTCTTCAAGCCGTGAACAAGAACACCGCGCTTAGCCTCCTGTCGCTCCAGCCGCTCCACGGTGTCGTCAGTAGCGGTATGTTTGTCCCAATAAGTGGTCAAGCTGCGGTAGAGCTGGCGGACATTGAACAAATCCTTAAGCTCGCATCCACTGTGCCACCTCCTATGTCTCTGTCTATGCTTGCCAAAGGTCTGAGCAGTCCTCCACAGGTGGACCCCAAACAGATTGCTTCTCTGAAGCAAAAGCCCTTAATCACTCCTCGATCCAGCATGGGTGCCTCCACACCCCCTCCTCCCGTCATGAGCGCCCAACAGGCCTCATCGGGCAACATCAGTCCTAGCCTTCCACCCCAAACTGGTCAACAACTGAGAACTGCCAGACAGTCACCAGCCTCCTCTTCGTCCTCAACCTCGTCTTCTCCTACCAATTGGGAAAGTACTCAACTAGGGCCAGATGTCATAGGAAACACCATTATCTCATATGAAACTGGAAAGCAAGAAGAGTTTGACGGCAAGGAGAAGGAATCAAGAGGCAAGAAGGCAGCCAAGACAGAGTATCCCTGTCGGTTCTGCAAGGAGGTTTTTTCCTTCTTAGGCGGCCTCCAGGCTCATATGCGTCATCATCTGGGAGCATCACCATACCAGTGCACCATTTGTAGCTACGCCGCTCCTGACAAGGCAACGCTGATTAGACATCTCAGAACGCACAGCGGCGAGCGGCCCTACGTCTGCTGCCTCTGTCACTACCCTTTCACTGTGAAGGCCAACTGTGAGCGTCATTTGCGTAAGAAACACATGAAAAACACACGTAAAGACatagagaaaaacattaaatatgtaacCACCTCCTCCAGTGTAAGTGGTGTAATCGGAGGCACCACACTTGACCTCCTTGATACGGCCACTGCCGGTAACGCATCTTGTCGATATTGCGGAGAGGACCTTAAGAACTACAGAGCACTTCAGATTCACCTGCGAACACACAATGGATGTCAGCGGAAGCCATTTGAGTGTAAGCAATGTGGGGCGGCGTTTCTTGCTAAAAGGAACTGCATTCACCATTTGCTGAAGCACCACCCAAATGTTCCAGAGCGGGAAATTGAAGAACACATCAAAAGTCTTGTACCGGTTGGAGGAGAACCCAACCCTCCAACCTCAAATGGGCAGTTTAACAGCACCGTTCCTCAGAATGTAGGCCCCTACTCTGGAACCGTTGAGCTGGACCAAGACCAGCCTTTGGATTTCTCTAGCAAATCTCAAAAAACGATTGCTTCAAACGTTAAACTTGAAGTAACATCATCTCCTCTGATTAATGACTGCTCTATGGAGCCCATTGATCTCTCGATACCTAAGGATCCTGAGAAGAAAATGACGAAAGAACAACCTCAGAGCATGTCTCTGAATCATCAAGACATCAAGAAAGAACAGACCCTGGAAACGACCCCTGGACTTCTTGCAGCTCTCCCAGTCCCCATTTCTAGCCTTGGTTCTGCTCTATCCAGTGACCCTACTAAGCCTTTTACTCGCTTGAAGCCATTGCTACCAAAACCATCTTCTGTTTCCAGCACTGAAATGGCACCGCTGGCCTCCATTACTCAAATCATCTCATCGATGTCAGCTACTCCAGTGTGGATCGAAACAGGAATAGATGGCAAAAACAGTGCAATGGATCATAATACACTAAGTGAGAAGAAGGGGAGTACCAAACTGGATTCCATTCAAAATGGGTCTTCTGATAACTCAAAGAAAAGAGGCAAGAAGAGACCATTTCAGGAAGAGATCTGTGATCCGAGAATGCCAGCAGGTTGTGGCATCGACTTGGAGTCAAGTGGAGAGTTTCCCAGTGTGGAAAAAATGCTGGCTACCACAGactcaaataaattcagccccTACTTACAACCTAGTCAGATGGAGCCAGtgaaggaggagaaagagaagcaGTCCATCAGTGAAGAGGCAAAAGAGGGACGAGAGGATAAGCCAAAGAAACCTTCACAGAATAAAGGAAAGAAGAATGCTTATTCCAATTCAGTGCAGAAAATGACCTGCCCATACTGTCCACGTCTATTCCCTTGGGCCAGCTCATTGCAAAGGCATATGCTAACACACACAGGTCAGAAGCCATACCCTTGTCCTCAGTGTGAGTCATTCTTCTCCACCAAGTCAAACTGTGAGCGCCACCTGCTCCGCAAACATGGAATATCTAATCGGACTCTTCAAAACAGTGGATCTCGACCCAAACCTAAGGCTGACGAAGGATCCCAAGGAAGTACTGGTACTGTTGAGAGTGTATCTGACACTGAACCTCCTGCAGCCAGAGATATTTTGGATCTGAGCTCCGTCAACCCCAAACAAGAGGACAAAGCTTCATCTCCTGAACAAGCGCTAGAACAAACAGGACAATCAGCCGCTGAACAAACAGACAGTATCTCAGACCCAAACGAAACACAGCCAGCAGAGGGAAGTCCTGAGGGAGTAGAAAATGATGACGATGACTCTCAAAGCAATAATAGTCTTGATATGAACCTCGCCAACAAGCTTGTAGACTTCAAGCTTTCTGGAGCAGAGCAACACCAGCCGAAATCGGCTGAAGCGGTTTCTCCACCAGATGAGTTCCCACACACCTGTGTGTCCTGTAAGAAGACCTTTCGCCATGCAGCCACCCTCAGCAGGCACCAGAAAACTCACATTCAGGAGGTCCAGCCAGAGGATGCAGGGAAAAAGGGAAGACGCCAAGCTGCTCCTCAAAACCCAGTCACAGCGCCCAGAAAGGAACTGGGGCTGGAGGCAAAGTTAGAAGATGATGAAAAGGATGAGAACAGCAGCTGTGTGGATAGTGGTGCTgatgaggaggagaaggagagggAAGAGAtgagtgatgatgatgaagaagaggCTGCTTCCTCAGAGCTCAGGGCTTTGGAAGAGGAGGGGGGCGACCTGGCTGGAGGCAAAACCGACAAGAGAAAGAAGATCTGTGCTGTGTGCAGCAAACGCTTCTGGAGCCTGCAAGACTTGACCAGACACATGCGCTCACATACTGGAGAGCGACCTTATAAGTGCCAAACCTGTCACCGCACCTTCACTCTGAAGCACAGTCTGGTGAGGCATCAACGCGTCCACCAGAAACCCACAGATGAAAAAGGGACAGATGAGGGAGAAATGAATGAAGAAATGGATGGTGCAAGAGATAACTGTGAAATGCTGGAGGAAAAAGAGGTCAGGTGTTCATCTGCAAGTCAAAGTGAGGCAACAGCTCCAATCCAGAGTGAGAATGAATGTGAGAAAGCAGGAACACCCCAAGAAGCAGAGAGTGAAGGACATGTGGAGGAAGTTCAGCATCCTGAAGATACATCCATGGAGATGAATTCTGCTGAAGAACCTCAGCCAGATGGGGCTGAACAAGAGGACCATCAGACATTAGTCGCCTCAGCAGAGGCCCAATCAGGCTGTGATCCAGAACTTGCAAAAATCAGTGTCCATAGCTGTACAGCAGCTCAGGAAGTGGAGACGCCTGATCAGTGAAGAGAAAATTCACTGTTACTTTTGTGCCATAGTTTATCAAGCTTCCACAAACACTAGGAGCTGCAAAGCCTGGCTTCTGCCGATATTTGTCTTATACGGTATGCGTGACAGATGCATACTGCGTAACAGTTTTGGATTCTTCTCTTGATGCcttaatgcttttttctaaagATCTGGATCAGCACATAACTGGACAGTAGCAATAATCCTATTTATATGATTGTTAATGAATCATATAAAGCCTTTATATCAATAAATTAGAAGCATTTGTATGATGAACAGAAGATTTATATATCAgcattaaattgtattattcttAAGTCAGTTTCTGTATGTTTTCAGTATCTGTATGGAGTTGttcggtttcttttttttgtcttatggAACTGAAGAGCTTAAGTGCCTGACTCATTTTCATTATCAAGATTAGCTGAATACAATTTGGATAAAATTGCTGTTTAtctatgtaatttttattttgggtgatCGTCGGCCAATCAGTTTATCGGCAATATTTGCCCTTTCTTTGTATATTATTCTTCATCTTTGAGCCTCATTGACAAATGTTGCAGAAGACTTGTATAAGTGGCTGGGAAGCTTGAAACAGCGCCTTCTGGTGGCGCAGAGTGTGAAGTATTATATTGTGAGGCCTGTGCATCAGAGAGAAGTGCTTCTGAGAGTCACACAGTATGTATTTAATGTCAGTGTGACTCAGAGTTCATTTTATGTATCtttaaagtgtgatttttttttttttttttggttttgtttgccTTCTTGGTTTTGTGTTTGTACTGGAAATCTCCCTAGGATTCATTTTGACTTCTTCACTGGCGTTCACACTAAAaatcaaacactttttttctctttatccAGTAGATATCGGTTCGAAAAAGCAATCTAAAATGTATCCCTTATATTGGTTCATGTAAAAGGGATGTCAAGCTTGCCTAAAACGAAACAGAAAAACTGTACAGCACATTAGTTCTTGTAACAGAGTGAATTGAATAACCCCTGAAGCCCACACAAAACTTCACTTGAGATTCGGTGAATTTGAAGTCCTCTTAGTGGCAAAATGTTTGCTAGTTTtcatcaatttttcattttcattttgagtctTTGGATTTAAGACCAATTCAAACATTGGAAACGAACTGGCCTTTGCATTTTTGAAAcacgttttctttcttttgtttttgtgtaatgaTGTTTGTAAATGTGCGTGTGGGTGTGCACAGTCATATGGAtagaaaacactgaacattttATGCAGGTATTTATTGATAAATCTAAAGCGTGTGGTTGTAATTTTGGAAAGCCATGTAGAATCCAATTTGTGCGGCGAGGAGAATCAAAAAGacaaatgttgttttgagaTTGAGGTTTTCGACATTTTCAAATACTTTGTACATTCAGATGCTTTAGACAGTTATAtcttttgtgtgtctttttgttCGTCCGCTAATGAAAACTTCAGCCAATTCAgctattcattcatttgagaGCATTGAACCATAGAGTTTAATTTGATGGGTTTGACattgattataaaataatgattctTGCATGTTGAGCTAATTTGAATTTCTCAGTTATTTTCTTTCTCAGGGGCTTTTCAaaatctgtgtttctgtctggtGTATAAATGCAAGCTCTGTTCACTACACTACATTTTAAGAGCATTTGACTGAATTTGGTCACAGTATGTTTAGGCCTAATTGTACCAAACCTTTTCtacaaattattgtaattaattcaCATATCAGTGACCATGTTTGTCTGAATTGCAAATACTTGTCAAATCAGTTCAGATGTAGACAACTTCttgattttgctttttttgaccTTGTTTATTTTCAACCCTGTAAAGCAAATAAATCATCCAATCAATAAATGTACACTAAGAACAA

Function

symbol description
rreb1 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including positive regulation of cell migration; regulation of cell morphogenesis; and regulation of transcription by RNA polymerase II. Located in fibrillar center and nuclear speck.

NR:

description
PREDICTED: ras-responsive element-binding protein 1-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K20210 RREB1; ras-responsive element-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259267.1 True 7178 mRNA 0.45 14 10625072 10655849

Neighbor

gene id symbol gene type direction distance location
riok1 riok1,LOC107689403,LOC107589821,LOC102776549,LOC107688531 coding downstream 328 10616301 ~ 10624744 (-)
pip4k2ab pip4k2ab,LOC107585365,LOC107688442,LOC107718096,LOC107689402,LOC107722628,LOC103035282,LOC108444221 coding downstream 14337 10592212 ~ 10610735 (-)
dnajc1 dnajc1,LOC107718098,LOC107585399,LOC107722591,LOC107688438 coding downstream 44450 10575252 ~ 10580622 (-)
si:dkey-29d8.3 si:dkey-29d8.3,LOC107586663,LOC107689400 coding downstream 51169 10570812 ~ 10573903 (-)
vipr1a vipr1a,LOC107689398,LOC107718100,LOC107722634,LOC107589827,LOC107688439,LOC107585408 coding downstream 60599 10543107 ~ 10564473 (-)
LOC122359387 LOC107688520 coding upstream 8439 10664288 ~ 10665070 (-)
cdyl cdyl,LOC107689409,LOC107688447,LOC107722500 coding upstream 13621 10669470 ~ 10684655 (-)
xirp1 LOC107722568,LOC107688450,LOC107585289,LOC107689412,LOC107718087,LOC107589818 coding upstream 55116 10710965 ~ 10726846 (-)
col15a1b LOC107585244,LOC107722600,LOC107688455 coding upstream 208222 10864071 ~ 10889273 (-)
LOC122359349 rabggtb,LOC107584851,LOC107732517,LOC107576861 coding upstream 499413 11155262 ~ 11159313 (-)
G10987 NA non-coding downstream 398216 10226218 ~ 10226856 (-)
G10869 selenof,sep15,LOC107693704,LOC107586130 non-coding downstream 465008 10158578 ~ 10160064 (-)
G10812 NA non-coding downstream 577699 10046818 ~ 10047373 (-)
G10773 NA non-coding downstream 697235 9926105 ~ 9927837 (-)
G10708 NA non-coding downstream 876332 9748387 ~ 9748740 (-)
G11057 NA non-coding upstream 10628 10666477 ~ 10666712 (-)
G11064 rpp40,LOC107722637,LOC107688445,LOC107689405 non-coding upstream 11793 10667642 ~ 10668967 (-)
G11063 rpp40,LOC107688445,LOC107722637,LOC107689405 non-coding upstream 13213 10669062 ~ 10669414 (-)
G11097 NA non-coding upstream 90186 10746035 ~ 10817620 (-)
G11096 LOC107688453,LOC107585269,LOC107722575 non-coding upstream 90692 10746541 ~ 10819202 (-)
fbxl7 fbxl7,LOC107718179,LOC107689422,LOC107688519,LOC107589836,LOC107722558,LOC107585539 other downstream 203597 10392682 ~ 10421475 (-)
G11011 chd7,LOC107585562,LOC107722533,LOC107688517,LOC107718105,LOC107589837,LOC107689390 other downstream 246861 10376063 ~ 10378211 (-)
ca8 ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC107722503,LOC102778484 other downstream 304669 10314033 ~ 10320403 (-)
lmo4 LOC107722609,LOC107693715,LOC107691760,LOC107589910 other downstream 481363 10140935 ~ 10143709 (-)
pkn2a pkn2,LOC107693716,LOC107585639,LOC107722607,LOC107718113,LOC107691687 other downstream 485487 10119973 ~ 10139585 (-)
G11102 tgfbr1a,LOC107585257,LOC107722631,LOC107688454,LOC107689415,LOC107718081 other upstream 102179 10758028 ~ 10764891 (-)
LOC122359216 tgfbr1a,LOC107688454,LOC107585257,LOC107722631,LOC107589809,LOC107718081,LOC107689415 other upstream 112125 10767974 ~ 10861595 (-)
G11105 LOC107688455,LOC107585244,LOC107722600 other upstream 144867 10800716 ~ 10803288 (-)
LOC122359462 NA other upstream 241700 10897549 ~ 10902625 (-)
trnau1apb LOC107688461,LOC107585172,LOC107722553,LOC107680226,LOC107589802,LOC107718075,LOC102202587 other upstream 679869 11335718 ~ 11339611 (-)

Expression


Co-expression Network