afg3l2 (afg3l2,LOC107589831,LOC107689395,LOC107688430,LOC107585478,LOC108435493)


Basic Information

Item Value
gene id afg3l2
gene name afg3l2,LOC107589831,LOC107689395,LOC107688430,LOC107585478,LOC108435493
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10481670 ~ 10489280 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259280.1
GCGCGCACCGGAAGTAAATCGCAATGGAACGCAGTCAATTTCAAGTTCATGTTGTCAAAACTTTTCGTCCGATGTCttgttttttgtattgattAGAGTCAAGAGCTCCCAGTGCCATTATGGCACACCGATATCTGCATCTGTCAAGAGGCTGCAGGAACCTTCTCCACGCTCTGCTGCCGAATGTCAGATCAACAAACCGTGTGCAATCGGTTCAGGGTGTTGGGCAGATCGTCCTAGATAGAAGATCCTTGCTGTCGCAGGTCTTGGGCGCCTACAGAAGATTAAGCTCCAAACATCCCAAAGGCTTTGAAAAATATTTCCCCAATAATAAAAACGGTGGGCCAAAAAACGGTGAGCCCAAGCCATCCAACGCGGAGGTCAAAGAGGCCAAACCAAACAACGCTCAGAAGACCACTGGTGGAGGTGGAAAtaatggaggaggaggaggaggaaaaaaagggGGGAGGAAGGATGAATCCAATTGGTACAGCCGTCTCCAAAAGGGCGATATGCCGTGGGACGATAAAGAGTTCCGCATGTACTGCCTGTGTGGAGCAGCTATCTGGACAGCCATCACGTATTATTTCTTCTTCCGAGACGGAGGAAGAGAAGTCACCTGGAAAGACTTTGTAAATGGGTACCTTGCTAAAGGGGTGGTTGACAGGTTGGAGGTTATAAACAAGCGATACGTAAAAGTCGTCTTTAGCCCTGGGAAAACTCCAGTTGACGGGCAGCAGTATGTGTGGTTCAACATCGGCAGTGTGGACACATTCGAGAGGAACCTGGAGACTGCTCAGCTGGAGCTGGGTATCGAAGGAGAGAACAGACTTCCAGTCGTCTACTCCGCTGAAAGCGACGGGTCGTTCCTCCTCAGCATGTTGCCCACCGTATTGATCATTGGCTTCTTGCTGTTCATGCTGAGGAGAGGTCCAGTCGGGGGAGGGAGGCCGGGGAGGGGCATGGGTGGGCTCTTCAGCGTCAGCGAGACCACCGCCAAAGTACTACGAGACGAGATTGACGTCAAATTCAAGGATGTCGCGGGCTGCGAGGAGGCCAAGTTGGAGATCATGGAGTTTGTAAACTTTCTTAAGAACCCAAAGCAGTACCAGGATTTGGGTGCCAAGATTCCAAAGGGGGCTATTTTGACCGGTCCCCCGGGCACAGGAAAGACTTTACTAGCCAAGGCCACCGCGGGAGAGGCTAACGTCCCCTTCATCACTGTGAATGGATCAGAGTTCTTAGAGATGTTTGTGGGGGTTGGGCCAGCCAGGGTTCGGGATCTCTTTGTATTGGCCCGGAAGAACGCGCCCTGCATCCTCTTCATAGACGAGATCGATGCTGTAGGAAGAAAGAGAGGCAGGGGCAACTTCGGCGGACAGAGTGAACAAGAGAACACTCTCAACCAGTTACTAGTTGAAATGGATGGATTTAACACTGCTACCAATGTTGTAGTGCTGGCGGGCACCAACAGACCAGATATTCTAGATCCAGCTCTGATGAGGCCTGGACGCTTtgatagacagatatatatcGGGCCACCCGATATCAAAGGCAGAGCCTCTATATTCAAAGTCCATCTGAGACCACTAAAGTTGGATGCAGAGTTGGACAAAGAATCACTGGCAAGGAAAATGGCTGCTCTGACGCCTGGTTTTTCAGGTGCGGACATCGCTAATGTGTGTAACGAGGCCGCGTTAATTGCAGCCCGCCACCTTTCTGATGCCATCAACCAAAAACACTTTGAGCAAGCCATCGAACGAGTAATTGGGGGTCTTGAGAAGAAGACGCAGGTTCTGCAGCCGGAGGAGAAGAAGACCGTGGCTTACCATGAGGCTGGTCATGCCGTAGCCGGCTGGTTCCTCGAGCACGCTGACCCTCTGCTTAAAGTGTCCATCATCCCGCGTGGGAAAGGTTTGGGCTATGCCCAGTATTTGCCCAAAGAGCAGTACCTGTACACCAAGGAGCAGCTGCTAGACAGGATGTGTATGACTTTGGGTGGACGTGTGTCTGAGGAGATCTTTTTTGGCCGCATTACCACGGGGGCACAAGACGACCTGAAGAAAGTGACACAGAGTGCCTACGCACAGATTGTGCAGTTTGGCATGAATGAAAAGGTAGGGCAGGTGTCTTTCGACCTGCCTCGGCAGGGAGAGATGGTTTTGGAGAAGCCCTACAGCGAGGCCACGGCACGCCTCATCGACACGGAGGTCAGGAACCTCATCAACACGGCCTACGAGCGCACACAGCAGCTGCTGAAGGAGAAGAAGGCTGAGGTGGAGAAGGTGGCACTACGTCTACTGGAGAAAGAGGTGCTGGACAAGAACGACATGGTGGAGCTGCTGGGCCGAAGGCCGTTTGCTGAAAAGTCAACTTATGAGGAGTTTGTGGAGGGAACGGGAAGCATGGATGAGGACACGTCTCTGCCGAAGGGCCTGAAGGACTGGAACAAGGAGCGCGGCAGTGAGAAGGAGGAGAGTACGGAGGAGCAGGTGGCCCGACAGATCACAGGTGGTATGCCCTTCTGAGGACCCCCTTTTTCAACCGTGACCCCGGAGGGTCAGAGCAGTTATTTAAGAGATGGGAAACATTTGCCAGACGGACACTGAGGCAAGTACCCGGTTCTTCAGAAGAGCTGCAGCTCTTGGTAGTAAGCTTTGGACTTATGTTGTGTACGGTAGGgtgtttatgaaatataaactttCTTTTGCTGAAACGCAATAAACTTCAGCACAATGTAAAGGATCGGGAGGTCTTCTGTTGAAAGTGTAGTGTATTTTACGTGACACATCGGCGCTTTGCTAGAAAATGTTTAACTTGAGGCAAAAGCGCTGTAGCTTGTCACTTTAATTTTACCTTTCGTTGACCAAGAAGACAAATCTCTCTCTATATAGATACATTTACGTCTAACAGGAGACCTGATAGGCGCAggtttgtgtttctgtgcattAAGGCCCCGGTTCAAAACTGCCACAATTTCGCGACCTTTCTCAAAGGTCTTTTTGCAATTCTTGCTTGCTCACGGGCATTTGAAAGACTGAAATGTACACGAGCGTTGTGAACCGTGCACAGTCACTCATGTCTCTCACAGAGTTTTGCACGGGCACGAGCGTCAGCCTTCGgtttcaatgttattttatgcaatttacGATCATGTCCTTTGATTGAAGGAAAGAGCAGTAATTTTTGATGTGTTCTCTTCTGTTGGAGTTTGTCTGCTTCATTTATGGCCCAGGCAGCTGCTCTCCGTGGTACAGGCTGATCAAACTATAGCTCCTTGTGAAATTGTTGCATACGGCCTAATGCAAGCGTACACAAATGCAGATAAGTAGTTCGTTATGTTAATGATCAGCTTATGAACATGTGTGATTTCTGACAGCAGTATTTATTCTACAGTGCAAATCCAAACCACAAATCGAGCTATGAGGTTAAAAACAGAACACTGTCTAATACGCATTGTCCTTTTGTGATTTCAGCTTGATATTACatctaaatgtgtattttgttcTGTGCGAAGGGTTTTGAACATGTTTGAAAACTTAAATAAATCCACATAAATTTCAAA
>XM_043259288.1
CGCGCACCGGAAGTAAATCGCAATGGAACGCAGTCAATTTCAAGTTCATGTTGTCAAAACTTTTCGTCCGATGTCttgttttttgtattgattAGAGTCAAGAGCTCCCAGTGCCATTATGGCACACCGATATCTGCATCTGTCAAGAGGCTGCAGGAACCTTCTCCACGCTCTGCTGCCGAATGTCAGATCAACAAACCGTGTGCAATCGGTTCAGGGTGTTGGGCAGATCGTCCTAGATAGAAGATCCTTGCTGTCGCAGGTCTTGGGCGCCTACAGAAGATTAAGCTCCAAACATCCCAAAGGCTTTGAAAAATATTTCCCCAATAATAAAAACGGTGGGCCAAAAAACGGTGAGCCCAAGCCATCCAACGCGGAGGTCAAAGAGGCCAAACCAAACAACGCTCAGAAGACCACTGGTGGAGGTGGAAAtaatggaggaggaggaggaggaaaaaaagggGGGAGGAAGGATGAATCCAATTGGTACAGCCGTCTCCAAAAGGGCGATATGCCGTGGGACGATAAAGAGTTCCGCATGTACTGCCTGTGTGGAGCAGCTATCTGGACAGCCATCACGTATTATTTCTTCTTCCGAGACGGAGGAAGAGAAGTCACCTGGAAAGACTTTGTAAATGGGTACCTTGCTAAAGGGGTGGTTGACAGGTTGGAGGTTATAAACAAGCGATACGTAAAAGTCGTCTTTAGCCCTGGGAAAACTCCAGTTGACGGGCAGTATGTGTGGTTCAACATCGGCAGTGTGGACACATTCGAGAGGAACCTGGAGACTGCTCAGCTGGAGCTGGGTATCGAAGGAGAGAACAGACTTCCAGTCGTCTACTCCGCTGAAAGCGACGGGTCGTTCCTCCTCAGCATGTTGCCCACCGTATTGATCATTGGCTTCTTGCTGTTCATGCTGAGGAGAGGTCCAGTCGGGGGAGGGAGGCCGGGGAGGGGCATGGGTGGGCTCTTCAGCGTCAGCGAGACCACCGCCAAAGTACTACGAGACGAGATTGACGTCAAATTCAAGGATGTCGCGGGCTGCGAGGAGGCCAAGTTGGAGATCATGGAGTTTGTAAACTTTCTTAAGAACCCAAAGCAGTACCAGGATTTGGGTGCCAAGATTCCAAAGGGGGCTATTTTGACCGGTCCCCCGGGCACAGGAAAGACTTTACTAGCCAAGGCCACCGCGGGAGAGGCTAACGTCCCCTTCATCACTGTGAATGGATCAGAGTTCTTAGAGATGTTTGTGGGGGTTGGGCCAGCCAGGGTTCGGGATCTCTTTGTATTGGCCCGGAAGAACGCGCCCTGCATCCTCTTCATAGACGAGATCGATGCTGTAGGAAGAAAGAGAGGCAGGGGCAACTTCGGCGGACAGAGTGAACAAGAGAACACTCTCAACCAGTTACTAGTTGAAATGGATGGATTTAACACTGCTACCAATGTTGTAGTGCTGGCGGGCACCAACAGACCAGATATTCTAGATCCAGCTCTGATGAGGCCTGGACGCTTtgatagacagatatatatcGGGCCACCCGATATCAAAGGCAGAGCCTCTATATTCAAAGTCCATCTGAGACCACTAAAGTTGGATGCAGAGTTGGACAAAGAATCACTGGCAAGGAAAATGGCTGCTCTGACGCCTGGTTTTTCAGGTGCGGACATCGCTAATGTGTGTAACGAGGCCGCGTTAATTGCAGCCCGCCACCTTTCTGATGCCATCAACCAAAAACACTTTGAGCAAGCCATCGAACGAGTAATTGGGGGTCTTGAGAAGAAGACGCAGGTTCTGCAGCCGGAGGAGAAGAAGACCGTGGCTTACCATGAGGCTGGTCATGCCGTAGCCGGCTGGTTCCTCGAGCACGCTGACCCTCTGCTTAAAGTGTCCATCATCCCGCGTGGGAAAGGTTTGGGCTATGCCCAGTATTTGCCCAAAGAGCAGTACCTGTACACCAAGGAGCAGCTGCTAGACAGGATGTGTATGACTTTGGGTGGACGTGTGTCTGAGGAGATCTTTTTTGGCCGCATTACCACGGGGGCACAAGACGACCTGAAGAAAGTGACACAGAGTGCCTACGCACAGATTGTGCAGTTTGGCATGAATGAAAAGGTAGGGCAGGTGTCTTTCGACCTGCCTCGGCAGGGAGAGATGGTTTTGGAGAAGCCCTACAGCGAGGCCACGGCACGCCTCATCGACACGGAGGTCAGGAACCTCATCAACACGGCCTACGAGCGCACACAGCAGCTGCTGAAGGAGAAGAAGGCTGAGGTGGAGAAGGTGGCACTACGTCTACTGGAGAAAGAGGTGCTGGACAAGAACGACATGGTGGAGCTGCTGGGCCGAAGGCCGTTTGCTGAAAAGTCAACTTATGAGGAGTTTGTGGAGGGAACGGGAAGCATGGATGAGGACACGTCTCTGCCGAAGGGCCTGAAGGACTGGAACAAGGAGCGCGGCAGTGAGAAGGAGGAGAGTACGGAGGAGCAGGTGGCCCGACAGATCACAGGTGGTATGCCCTTCTGAGGACCCCCTTTTTCAACCGTGACCCCGGAGGGTCAGAGCAGTTATTTAAGAGATGGGAAACATTTGCCAGACGGACACTGAGGCAAGTACCCGGTTCTTCAGAAGAGCTGCAGCTCTTGGTAGTAAGCTTTGGACTTATGTTGTGTACGGTAGGgtgtttatgaaatataaactttCTTTTGCTGAAACGCAATAAACTTCAGCACAATGTAAAGGATCGGGAGGTCTTCTGTTGAAAGTGTAGTGTATTTTACGTGACACATCGGCGCTTTGCTAGAAAATGTTTAACTTGAGGCAAAAGCGCTGTAGCTTGTCACTTTAATTTTACCTTTCGTTGACCAAGAAGACAAATCTCTCTCTATATAGATACATTTACGTCTAACAGGAGACCTGATAGGCGCAggtttgtgtttctgtgcattAAGGCCCCGGTTCAAAACTGCCACAATTTCGCGACCTTTCTCAAAGGTCTTTTTGCAATTCTTGCTTGCTCACGGGCATTTGAAAGACTGAAATGTACACGAGCGTTGTGAACCGTGCACAGTCACTCATGTCTCTCACAGAGTTTTGCACGGGCACGAGCGTCAGCCTTCGgtttcaatgttattttatgcaatttacGATCATGTCCTTTGATTGAAGGAAAGAGCAGTAATTTTTGATGTGTTCTCTTCTGTTGGAGTTTGTCTGCTTCATTTATGGCCCAGGCAGCTGCTCTCCGTGGTACAGGCTGATCAAACTATAGCTCCTTGTGAAATTGTTGCATACGGCCTAATGCAAGCGTACACAAATGCAGATAAGTAGTTCGTTATGTTAATGATCAGCTTATGAACATGTGTGATTTCTGACAGCAGTATTTATTCTACAGTGCAAATCCAAACCACAAATCGAGCTATGAGGTTAAAAACAGAACACTGTCTAATACGCATTGTCCTTTTGTGATTTCAGCTTGATATTACatctaaatgtgtattttgttcTGTGCGAAGGGTTTTGAACATGTTTGAAAACTTAAATAAATCCACATAAATTTCAAA

Function

symbol description
afg3l2 Predicted to enable ATP binding activity; peptidase activity; and zinc ion binding activity. Predicted to be involved in mitochondrial protein processing and protein-containing complex assembly. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of m-AAA complex. Human ortholog(s) of this gene implicated in optic atrophy 12; spastic ataxia; spastic ataxia 5; and spinocerebellar ataxia type 28. Orthologous to human AFG3L2 (AFG3 like matrix AAA peptidase subunit 2).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08956 AFG3; AFG3 family protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259280.1 True 3565 mRNA 0.49 17 10481670 10489280
XM_043259288.1 False 3561 mRNA 0.49 17 10481670 10489279

Neighbor

gene id symbol gene type direction distance location
inhbab inhbab,LOC107718177,LOC107589832 coding downstream 5441 10465309 ~ 10476229 (-)
LOC122359424 mplkip,LOC107722562,LOC107585495,LOC107688429,LOC107718104,LOC107689394,LOC107589834 coding downstream 48549 10429794 ~ 10433121 (-)
trnak-cuu_1 NA coding downstream 92047 10389551 ~ 10389623 (-)
hs2st1a hs2st1a,hs2st1,LOC107718112,LOC107589844,LOC107691454,LOC107722647,LOC107585633,LOC106598897 coding downstream 323649 10146582 ~ 10158021 (-)
lrrc8da lrrc8d,lrrc8da,LOC107722644,LOC107585666,LOC107718115,LOC107691468,LOC107589846,LOC107722505 coding downstream 368085 10108131 ~ 10113585 (-)
ctdsplb ctdsplb,LOC107722544,LOC107688434,LOC107585460,LOC107589830,LOC107689397,LOC108435491,LOC108280637 coding upstream 18043 10507323 ~ 10520967 (-)
zbtb47a LOC107722502,LOC107688435,LOC107718174,LOC107689427,LOC107589829,LOC107586677 coding upstream 45856 10535136 ~ 10541375 (-)
vipr1a vipr1a,LOC107689398,LOC107718100,LOC107722634,LOC107589827,LOC107688439,LOC107585408 coding upstream 53827 10543107 ~ 10564473 (-)
si:dkey-29d8.3 si:dkey-29d8.3,LOC107586663,LOC107689400 coding upstream 81532 10570812 ~ 10573903 (-)
dnajc1 dnajc1,LOC107718098,LOC107585399,LOC107722591,LOC107688438 coding upstream 85972 10575252 ~ 10580622 (-)
G10987 NA non-coding downstream 254814 10226218 ~ 10226856 (-)
G10869 selenof,sep15,LOC107693704,LOC107586130 non-coding downstream 321606 10158578 ~ 10160064 (-)
G10812 NA non-coding downstream 434297 10046818 ~ 10047373 (-)
G10773 NA non-coding downstream 553833 9926105 ~ 9927837 (-)
G10708 NA non-coding downstream 732930 9748387 ~ 9748740 (-)
G11057 NA non-coding upstream 177197 10666477 ~ 10666712 (-)
G11064 rpp40,LOC107722637,LOC107688445,LOC107689405 non-coding upstream 178362 10667642 ~ 10668967 (-)
G11063 rpp40,LOC107688445,LOC107722637,LOC107689405 non-coding upstream 179782 10669062 ~ 10669414 (-)
G11097 NA non-coding upstream 256755 10746035 ~ 10817620 (-)
G11096 LOC107688453,LOC107585269,LOC107722575 non-coding upstream 257261 10746541 ~ 10819202 (-)
fbxl7 fbxl7,LOC107718179,LOC107689422,LOC107688519,LOC107589836,LOC107722558,LOC107585539 other downstream 60195 10392682 ~ 10421475 (-)
G11011 chd7,LOC107585562,LOC107722533,LOC107688517,LOC107718105,LOC107589837,LOC107689390 other downstream 103459 10376063 ~ 10378211 (-)
ca8 ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC107722503,LOC102778484 other downstream 161267 10314033 ~ 10320403 (-)
lmo4 LOC107722609,LOC107693715,LOC107691760,LOC107589910 other downstream 337961 10140935 ~ 10143709 (-)
pkn2a pkn2,LOC107693716,LOC107585639,LOC107722607,LOC107718113,LOC107691687 other downstream 342085 10119973 ~ 10139585 (-)
G11102 tgfbr1a,LOC107585257,LOC107722631,LOC107688454,LOC107689415,LOC107718081 other upstream 268748 10758028 ~ 10764891 (-)
LOC122359216 tgfbr1a,LOC107688454,LOC107585257,LOC107722631,LOC107589809,LOC107718081,LOC107689415 other upstream 278694 10767974 ~ 10861595 (-)
G11105 LOC107688455,LOC107585244,LOC107722600 other upstream 311436 10800716 ~ 10803288 (-)
LOC122359462 NA other upstream 408269 10897549 ~ 10902625 (-)
trnau1apb LOC107688461,LOC107585172,LOC107722553,LOC107680226,LOC107589802,LOC107718075,LOC102202587 other upstream 846438 11335718 ~ 11339611 (-)

Expression


Co-expression Network