dnajc1 (dnajc1,LOC107718098,LOC107585399,LOC107722591,LOC107688438)


Basic Information

Item Value
gene id dnajc1
gene name dnajc1,LOC107718098,LOC107585399,LOC107722591,LOC107688438
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10575252 ~ 10580622 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259477.1
ACCGAGGCTTCCGTGCTTATTGGCTCGCGCCGTGGCGGCTGCATGTAAAACGTGTGTGGCGTGCGTAGTGCAGGCTGGCCGAGAGACGGGCCCGCTGGAGCCAAACAACGGGAAGTTATGCTAAATTCGCCCGAAAACCAACATTGTCCGAATGGGTAGTAGGCAGTAGACCTCATCAAACGCGTTAAAACAAAGTTTCAGCGATGGCTTCGCCCGAGATCCTAACGTTAATGTTGTTCTCCGGGCTGATCGTTATTCAGCCTCCGCCAGCGTTAGCGTGGGACGCGGACCTGGAGCTTTTCGACCTAGTGGAGGATATTCCCCAATCCTTCTACGAGTTCCTATCGGTGAAtcagGATGCATCCTCATCTGAGATCAGGAAGGCATATAGAAAGCTCTCTCTTACATTACACCCcgataaaaacaaagatgaaaatgcagaaaaccaGTTTCGACAGTTAGTAGCCATCTATGAAGTCCTCAAGGATGAGGAAAGAAGACAAAGATATGATGACATCCTGGTTAATGGGCTGCCGGACTGGAGGCAGCCTGTCTTCTACTATCGACGTGTTAGGAAGATGAGTAATGGAGAGTTGggcttcctcctcttcctcattctGACAGTGGGTCACTATGCGGTTATATGGTCCATCTACCTTGAGAAGCAGCTGGATGAACTTCTAAGCAGGAAGAAGagggagaagaaaaagaagcaaagcaaTAAGATAACGGATGAGATTAAGTCCTTGGCACAGGACAAAAATGAGAGgtctgATAGGCCACACTGGCATGATATTTTGCCGCTCAAATTAAGCATCTGGTTGTACTATTCAGTGAAGTCCCTCCCTCATATAATACAGGATGTGAAGCAGTATTATAAAGATTATAAGGAAATGAAAGTAAAAGAGAAGCAGGAGGCAGAGGCTCTGGCAGAACAGGAAATGCAGCAGAaagaaaaacGGCCCAAGGTGAAGAAACCTAAAGTGGAGTTTCCAGTCTATGAAGCCAATACAAATGCTGCTTTTGTGCCAATTTATGATCAGGGGACATCTATTGAAGATATTGAGGATCAGATGGATGACTGGTTAGAagacaaaaaacagcaaaagaagAAAGCTCATGAGTGGATGGAGGAGGATCTCAGCCAACTCTCTCGTTGCATGGCCAAGTTTCCTGGTGGAACGCCAGGCCGGTGGGAGAAGATCGCTCACGAGTTAGGCAGATCAGTGACCGAGGTGACGGCAAAAGTGAAGCAAGTCAAAGATTGTGTCACAAATACATCAgGGTTGGTGAAGCTGTCTGATCTGAAGGGTGGTGCGGTGATGGGAAAGAGCTCCAGAGCCGTCACTGTGCCAGACAGTCTAATGACCCAGCGAGAGGAGTCCTTCGAGCAGCAGCTGGAGGATTCAGCAGAGCCTGCTGGGGCAGAGGACTCCGAGGGCAAAGCGCTCCGAAGACGGACTAAAAAGTGTGTGGCCGGTAGCGCTGGAGCTGGAGCAGCGGAGGAGAAAATGAAAGGACGCAGACAAAGAGACTTTGACCCCACAGCTGTAGATGATGACAGCGAAGATGAGAAGAAACCGTCAGCCTCCAAAGAAAAAGCCAGTGCTGCTGAAGATGTCTGGACACAGAACCAGCAGAGGCTCTTGGAGCTGGCCTTGCAGCAATACCCACGAGGCACCACCGAACGCTGGGACAAGATCGCTAAGGTGGTGCCTGGGAAAACCAAGGAGGAGTGCATGTCCCGTTTTAAACTGTTGGCGGAGCTGATTCAGAAACGGAAGCAGGCCAAGAGCTGACTTCTGGTCTTCAGTATTTCACCGTACCTCTCACCTGCTTGTTATGTGCCTTAATGCAACCCTATGTCCTGTTGTCGGATTACGTGCCATGTTCAGTCTGAATCATCAGCATTAATCATTGGAGAGATCCAAACTGCACACACAAAggaggttttatttattttaaaattttgtttcaGATTGtagacttattttttttttctttctctttgcaaCCAAACCGTTCAAGGAGCAGAAgagatgcattttaattattataattttttctccCCCGTAGTTTTGACTCATTGTTTTCCAGAAGCACAGTGTGTTGGGCTATAATGTTTTGGTcatatgttacaaaataaagtatttgcATACAATA

Function

symbol description
dnajc1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human DNAJC1 (DnaJ heat shock protein family (Hsp40) member C1).

NR:

description
dnaJ homolog subfamily C member 1-like

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K09521 DNAJC1; DnaJ homolog subfamily C member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259477.1 True 2163 mRNA 0.47 12 10575252 10580622

Neighbor

gene id symbol gene type direction distance location
si:dkey-29d8.3 si:dkey-29d8.3,LOC107586663,LOC107689400 coding downstream 1349 10570812 ~ 10573903 (-)
vipr1a vipr1a,LOC107689398,LOC107718100,LOC107722634,LOC107589827,LOC107688439,LOC107585408 coding downstream 10779 10543107 ~ 10564473 (-)
zbtb47a LOC107722502,LOC107688435,LOC107718174,LOC107689427,LOC107589829,LOC107586677 coding downstream 33877 10535136 ~ 10541375 (-)
ctdsplb ctdsplb,LOC107722544,LOC107688434,LOC107585460,LOC107589830,LOC107689397,LOC108435491,LOC108280637 coding downstream 54285 10507323 ~ 10520967 (-)
afg3l2 afg3l2,LOC107589831,LOC107689395,LOC107688430,LOC107585478,LOC108435493 coding downstream 85972 10481670 ~ 10489280 (-)
pip4k2ab pip4k2ab,LOC107585365,LOC107688442,LOC107718096,LOC107689402,LOC107722628,LOC103035282,LOC108444221 coding upstream 11590 10592212 ~ 10610735 (-)
riok1 riok1,LOC107689403,LOC107589821,LOC102776549,LOC107688531 coding upstream 35679 10616301 ~ 10624744 (-)
rreb1b rreb1,LOC107722578,LOC107718094,LOC107689404,LOC107589881 coding upstream 44450 10625072 ~ 10655849 (-)
LOC122359387 LOC107688520 coding upstream 83666 10664288 ~ 10665070 (-)
cdyl cdyl,LOC107689409,LOC107688447,LOC107722500 coding upstream 88848 10669470 ~ 10684655 (-)
G10987 NA non-coding downstream 348396 10226218 ~ 10226856 (-)
G10869 selenof,sep15,LOC107693704,LOC107586130 non-coding downstream 415188 10158578 ~ 10160064 (-)
G10812 NA non-coding downstream 527879 10046818 ~ 10047373 (-)
G10773 NA non-coding downstream 647415 9926105 ~ 9927837 (-)
G10708 NA non-coding downstream 826512 9748387 ~ 9748740 (-)
G11057 NA non-coding upstream 85855 10666477 ~ 10666712 (-)
G11064 rpp40,LOC107722637,LOC107688445,LOC107689405 non-coding upstream 87020 10667642 ~ 10668967 (-)
G11063 rpp40,LOC107688445,LOC107722637,LOC107689405 non-coding upstream 88440 10669062 ~ 10669414 (-)
G11097 NA non-coding upstream 165413 10746035 ~ 10817620 (-)
G11096 LOC107688453,LOC107585269,LOC107722575 non-coding upstream 165919 10746541 ~ 10819202 (-)
fbxl7 fbxl7,LOC107718179,LOC107689422,LOC107688519,LOC107589836,LOC107722558,LOC107585539 other downstream 153777 10392682 ~ 10421475 (-)
G11011 chd7,LOC107585562,LOC107722533,LOC107688517,LOC107718105,LOC107589837,LOC107689390 other downstream 197041 10376063 ~ 10378211 (-)
ca8 ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC107722503,LOC102778484 other downstream 254849 10314033 ~ 10320403 (-)
lmo4 LOC107722609,LOC107693715,LOC107691760,LOC107589910 other downstream 431543 10140935 ~ 10143709 (-)
pkn2a pkn2,LOC107693716,LOC107585639,LOC107722607,LOC107718113,LOC107691687 other downstream 435667 10119973 ~ 10139585 (-)
G11102 tgfbr1a,LOC107585257,LOC107722631,LOC107688454,LOC107689415,LOC107718081 other upstream 177406 10758028 ~ 10764891 (-)
LOC122359216 tgfbr1a,LOC107688454,LOC107585257,LOC107722631,LOC107589809,LOC107718081,LOC107689415 other upstream 187352 10767974 ~ 10861595 (-)
G11105 LOC107688455,LOC107585244,LOC107722600 other upstream 220094 10800716 ~ 10803288 (-)
LOC122359462 NA other upstream 316927 10897549 ~ 10902625 (-)
trnau1apb LOC107688461,LOC107585172,LOC107722553,LOC107680226,LOC107589802,LOC107718075,LOC102202587 other upstream 755096 11335718 ~ 11339611 (-)

Expression


Co-expression Network