rpp40 (rpp40,LOC107688445,LOC107722637,LOC107689405)


Basic Information

Item Value
gene id rpp40
gene name rpp40,LOC107688445,LOC107722637,LOC107689405
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10665905 ~ 10671812 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259616.1
cgtttgtgttcaacagaaaatAGAAACTCGGGTTTAGAACAACAAATGAGGACAATTTTAGtttgaactgtccctttaattttAGAGGATTCTTTTGGATTGGTTCCAAATTATGATTTAAGTCCCCTAACAATTACTTAGGATTTTGAAAGAGGTAATTTGGGTAATTTGGCGCCGTGGTTTTCCATACAGAGActataaataactgttatttCACAAATCCGGCCACACTTTAGGGTATTTTAGCTAACCATTACGGCGCAGGATCATTTAAGTTTTTATAAGTCattctagttttattttattttatttgtaggtGTAATATCGTTTGTAGTTATAGTATCAGTTATACTAATATACACTTATTCgttgtttataaaataataaatcggAATAACCACACATTTgctttaattaactttttaactatttatttttattgaagagaataacaaatgtatatacaaaaaagGCACTAACGATTTAAAGTTCTCAAAGGGCACacatttgcaaataatattCCTATCAGGTTTACGAGCCTGCCCGCGAGCAGGAACTGACGTCAAATGTTTGCGACAGAAGTTGGTAGCGGTTTCTAAACATAAAGCCGCATAACCTGGGAGCACAGTCggcttgtttcttttttttgccaggGTGGTGTCATAAAAATGTAGACATTGCGCACAGATATCAAAATGTCTCCAGAGCTGGAAAAGTGCCCGAGAAGCCTGTTGGTATGCGAGAAATCAAACTTCTTGCATGAAAAGTCTCGGCATGACATCCACGTGTCGAAGCACAGCTTTAATTACAAGATCTCAGTGCTCATACCTGAATGCGGGACCCTTCCTGAGAACATCAGAGGTGTCCTCCACAGCTTCAGCCCTTACTATCTAGTGCGGGATCTGCCGGTTTATCAACTGCTGGAAGAAACGTTCCTCGAGTCGCTTGTCAAGAAGGGAAACTTCTACGCGCTTTCCTACAACACCAGAATTGATGAAGATAATGCCATTGCTCTTCTTTCCAGCGgtcagTTAATTTTGTCTCTCGATAAAGACACGTATGAACAGCTTGGCTTGGAGGGACGCCCATCTCTATACAATCACAAAAAAGCCATGAGATTTGTGGTGACTCTGGATCTCACTGATAAAAGCTTGAACCCAGGCACTAAACGATACCAGCGGGTTCTCTCAAGCTTGAAGGACAGACTACCACtcaaatatgactttcttttaacTAAATACAAGACAGGTTCAGATGAAGATCTGACTCTGAACAAGCTGTTGTCCCAGTACTCTTACGAGGAGCACAAGCCTGCTTTAAGCCATCACACCCTGAAAAATATGCCATGTCCCACACTTTACCCATCAGATATACAGGGAAAGACACTGTCATGTGACCCACATCACTTCTTGGAGTGGCTTGGAGCGGTTAACCTAGACATCAGCTGTGAAAATGCTGCTGATAGTTTCGTGTCAACATATGCGTGTCCAGAGCCCCAGAGCTCTGTCAGTCAGGCCCTGCTGTTCACCGTCACTGGCTTCATCTCACCTGagaatgtgtttgtgctgctGCAGGAACTCAGGCAGTATTTCATTGAGCCGAAGTTTACACCATGGATTTCCCTCACTGTGCATGGATTTATGGATAGTCCCGTGTCTTGGGGAACCACAGAACATGGATTCCTCAAAGGGGGTGAAAACTTCtacaattttgtttgttttaagaatCAGGACTACTGGTTACTCATGGCTACCGGTGCTCAAGATGGCTGCCCACCCTAGAAcagtggactttttttttttttttttttcgtctttttttttatgtaaaacacaaatataaatataaaatgtgcactgttgtttcaagtgtttttttattaaattataagaGGACaacagtaagtaaaaaaaaaaagtatataatatcAATTTATTTGGACCAGTCATTTTCACAGCTGTTACATGTTCAGAAACCTAAAAATAATCTTTACAGATTGTACaatttatagcattatttaGTATATCAACTATAAGAAATAAGCCttgccatttttttatatatatatatatgaccagCATTTGAAACTAAAGGCAGATCACATTATGTACAGCTATGCTGAAAGTCAGAAAATGCTGATAATAGATATACTTTTGTCAGTGAAGTGACTGGAACAAAGTTATTTTCCCCAGGAATAGAGTCAGCAATGTTTTACATCAAACTACAACACCCTGTATACAGAATTCAAAAGACATCCATAATGGAGAGAGGGCTGAGCTCAAAGTCTCAAATTTACAAAAAcgaaaaacattttagatatCGCAAAGCtgcattaagaaaataaagacgCGTTTCTGGTTTTGTCTTTCAGGGTTAATAACAGATATCGAATGTTAATTATCACGGATCAAAGTTTCTTTGACAGTCAACGAAGCAGTTTACATACCACAAGTTAAAAGGTATAAGACATTATTAATGTCACAATGCACTTCATAATCAAATATAACCTGTTTTGTAAAAATCTCCAATTAAAGTAAGaactaaaaaaagcattcaataGGTATAAGAGAAATAATCCAAACAATTCTATTTCCAcaatcataaatataatttcgTAAACAagaattaattttacaaaaccaTTTGGGAAAGGAAAAACATACACAACCATCTGTTAATTGATCCATGTTAAGGAACCACTTCAGCGAACTATGGTCAATAAATACtgaatacaattaataataacatacatAAGTTACACATTTTAATCGCTGGGGCCGAGcggattattttttttcctgtaaagtaTTTGTCAAACATACCAATTGTAAGCAAAGGTTTGGAGCTGAATAAGGAATAGTGCATAGATATCTGTACCAGAAACATGCTTTAGCATGAGATTTTGAAAAAAGGAAGCTtcactgcttaaaaaaaaaaaaaaatatggtttttGAGAGGTAGGACTTTAGCACTAAGAAAAAGATAATTTTGCAAAGTcacattttatgcaatttttatgtGGACAGTCTCACAACGCATTTTCTGACTCCATCCCCACccatgttataaaaaaattgtaataagaAATCCGTTCCATTTAATAACAGTGCATACTAGCCAGTCATTACAGATGTTTGGATGGATTTCAGTAGGATCTCCCCTTAGAGATGGTTGTTTATCTCAAGGGCTCTTCTGATGATACAGCAGTCCAAGTCCGTTTGAACCAGCAGAAAAAGAAGGATGCAGATTTAAAAACACCAGCATCCTTTATTGACTTGTGAGGAACATACCTCATTCAATTTCATAATATCATAAGTTATTAAATTAGAGATACTgtgtcaaaaacatttacatcaaAATTATTTGGTGGTATGTTACTCCAAAGCAAACAGTTTGTATGAAACTCTAAGCAGAAAACTTTAAATGTTAACTTTGATACAAATAACTGATTTCCTACTAAGCCAGAGCCTTGCAAATCCATAAGTATTCATTTTGTTGACTTGATCGTTATGTAAATCAGAAATTCAATTAGTAGTCTGTGTAACAGCACTGATGCTAGATCTTTAAGCACTGGTGTCATTTTTTGTTATCGCCAGTGTCTGTTTTTCTTGATATAACCATCAATTCATAAAAGTGACTTTAAAGGGCTGGCTGATGTAAATGCCGGCAGGATTTGCTTGAATATTCACGATGATCAAGGCTTTctgtttgctgaataaaaagtaCCTACTGAAGAAAAGACTGCTAAAGACTTGATACTAATTACAATCTGTTAGTGTAACGATATCCAAAATGAGCAAAATTCAACTCAAGTCTCATGCATCCCTTTCTTAAATTACACTATTATCCATCTTTTCTCAATCGGTCTGCATAGGTGGTGCTTCGAAAAGTAGCCCAAATCTGTATAAACCTCTATGACAAAAAGCAATTCATTACTTGATACAACAGAAATTGAGCAGAAAGATGACAGGAATTGACATATATTGGCATTCTGTCCTTCTGCGCAGTGCAAGATTCATCACAAACTTTGCATTGAAGTCATTATCAAGTGTAGCAGAATGAGTCGCAGCTTTCTGCAAtctaaagaaaatgaaatacgTCCTGGACGAAGATGAAGTGCGAGGTTTGACCACGCCAGTCTTCCACTGTTCCATGAAAAtcctactaaaaaaaaaaaaaaaaaaaaaaaaaaaggaacca

Function

symbol description
rpp40 Predicted to contribute to ribonuclease MRP activity and ribonuclease P activity. Predicted to be involved in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); endonucleolytic cleavage involved in tRNA processing; and tRNA 5'-leader removal. Predicted to be part of multimeric ribonuclease P complex and ribonuclease MRP complex. Orthologous to human RPP40 (ribonuclease P/MRP subunit p40).

NR:

description
ribonuclease P protein subunit p40 isoform X2

GO: NA

KEGG:

id description
K14530 RPP40; ribonucleases P/MRP protein subunit RPP40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259616.1 True 4200 mRNA 0.36 8 10665905 10671812

Neighbor

gene id symbol gene type direction distance location
nrn1b nrn1b,LOC107722529,LOC107688533,LOC107589820 coding upstream 5444 10658601 ~ 10660461 (+)
nebl nebl,LOC107722518,LOC107688530,LOC107718172,LOC107689428 coding upstream 49609 10611990 ~ 10616296 (+)
bmi1b bmi1b,LOC107585379,LOC107688441,LOC107689401 coding upstream 75445 10584873 ~ 10590460 (+)
klhl40a klhl40a,LOC107722643,LOC107688437,LOC107586696,LOC107718175,LOC107689425 coding upstream 131795 10530608 ~ 10534110 (+)
hhatla hhatl,LOC107688529,LOC107722653,LOC107689424,LOC107718176 coding upstream 136986 10522361 ~ 10528919 (+)
oxsr1a oxsr1a,LOC107718088,LOC107589819,LOC107722611,LOC107585310,LOC107689410,LOC107688448 coding downstream 20698 10692510 ~ 10702785 (+)
slc22a13a LOC107722499 coding downstream 31434 10703246 ~ 10706943 (+)
csrnp1a LOC107722574,LOC107585280,LOC107689421,LOC107589814,LOC107718084,LOC107683225,LOC107688521 coding downstream 62104 10733916 ~ 10741971 (+)
gorasp1a LOC107688453,LOC107722575,LOC107585269,LOC107689416,LOC107589815,LOC107718085 coding downstream 70673 10742485 ~ 10748341 (+)
si:dkey-24c2.9 LOC107718082,LOC107689417,LOC107589878 coding downstream 77008 10748820 ~ 10752810 (+)
LOC122359526 NA non-coding upstream 96897 10567881 ~ 10569008 (+)
G10901 NA non-coding upstream 125915 10421937 ~ 10539990 (+)
G10914 afg3l2,LOC107718155,LOC107688430,LOC107589831 non-coding upstream 182953 10445181 ~ 10482952 (+)
G10918 inhbab,LOC107718177,LOC107589832 non-coding upstream 190622 10470121 ~ 10475283 (+)
G10903 NA non-coding upstream 272755 10392693 ~ 10393150 (+)
G11077 NA non-coding downstream 86244 10758056 ~ 10831642 (+)
LOC122359515 NA non-coding downstream 148299 10820111 ~ 10822197 (+)
G11106 NA non-coding downstream 224871 10896683 ~ 10897497 (+)
G11117 NA non-coding downstream 281238 10953050 ~ 10978280 (+)
G11133 NA non-coding downstream 484726 11156538 ~ 11157341 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other upstream 795 10662729 ~ 10665110 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other upstream 504096 10158532 ~ 10161809 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other upstream 749044 9911628 ~ 9916861 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other upstream 914693 9746570 ~ 9751212 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 1493990 9162611 ~ 9171915 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 39318 10711130 ~ 10718194 (+)
LOC122359491 tesk2,si:dkeyp-75h12.2,LOC107585988,LOC107679327,LOC107602527,LOC107728975,LOC107714850,LOC107674209,LOC107562290,LOC107668671,LOC107588168,LOC107691921,LOC107753974 other downstream 448042 11119854 ~ 11135991 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other downstream 557948 11229760 ~ 11264234 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other downstream 631866 11303678 ~ 11338469 (+)
mrpl34 LOC107688463,LOC107585198,LOC107722555,LOC107680228 other downstream 667923 11339735 ~ 11341111 (+)

Expression


Co-expression Network