bmi1b (bmi1b,LOC107585379,LOC107688441,LOC107689401)


Basic Information

Item Value
gene id bmi1b
gene name bmi1b,LOC107585379,LOC107688441,LOC107689401
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10584873 ~ 10590460 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259635.1
GTTTGCGCTGAACCATCGGGCGCTGTTTTTCGGCTCGCCGTGCGGGAGAAGTGCGCCTCTGGAATGTACCACCTATGACCGGAATCTGTGGATTTATCCGTGAATCGAATCGGAAAGGGTCGGCGAAGAGCGAGCTGCGTTAACCTATGTGCAATTGCGCAAGAAGGCCACAATGAGCACGGCGGTGAAACGTTAGAGCCATTGACAGCGTCTGCAGCTCATTCCAAGATGGCCGCTTCGGTAGCATTCATTTTTTGCTGATCGACTCTCAAGTTTCATTGTCTACCACAACAAAGCTAAGAAACCATCGCGAAACGCACGGGGTTTGCGAACTCTAATGACAATGCACCGAACAACGAGAATCAAGATAACGGAGCTAAATCCTCATCTGATGTGCGTTTTATGTGGAGGATACTTCATCGACGCGACCACCATCGTCGAATGTTTGCATTCGTTCTGCAAACTGTGCATTGTGAGGTACCTGGAGACCAGCAAATATTGTCCAATTTGTGATGTCCAAGTTCATAAAACGAAGCCTCTCCTCAATATCAGGTCAGATAAGACCCTTCAGGACATCGTCTACAAGCTGGTGCCTGGTCTGTTCAAAAATGAGATGAAACGAAGGAGAGATTTTTATGCAGAGCATCCAGTTGATGCTACTAATGGTTCTAATGAGGACCGAGGAGAAGTGGCAGATGAAGACAAGAGAATCATTGCTGATGATGAGATCATCAGTCTGTCCATTGAGTTTTTTGATCAGAACAAgATTGACAGTAAAGagggagaagaaaaagaaaccaCAAAAGAGGTGAATGTAAAGCGGTACTTGCAGTGCCCTGCGGCTATGACAGTAATGCATCTCAGAAAATTTCTCAGAAGTAAAATGGATATACCATGTACCTTTCAGATTGAAGTTATGTATGAAGACGAGCCTTTGAAAGATTATTATACTCTTATGGATATTGCTTATATCTACACATGGAGAAGGAACGGGCCCTTGCCATTGAAGTACAGAGTTCGGCCCGGttgcaaaaaaatgaagttAAGCGGCCCGAGGGATGATATGGCCGGTGGCAGAAGGCCTGATATAGAAAGCGACTCCAGCAGTGACAAACCAAACAGCCCGACTGCCGCCGCCGCTCCATCCACCTCCACCTCTCTGCCCAGCCCGAGCGCTCCGGTCCAGTCTTCACACCCCAGCTTCCCCCATATCTCCACCGTTAATGGAGTCTCTGCCAAAGTGGGCCACAATGGCCAAACTCCTTTCAGCAGCAAAGTCTGCAAAACTTCTCACAACGGCTCCAACTCCCTTGGGTGACTTGCTTATGGATGCCAAAGCCATCGACCCCCCCCCTTGCAAAACAGAGCTGTGATGTAGATGCTTTCTTTATAAACCACCTCTTcgatttttttatatcatttttaaatatatttgtttcatCACGGCGTGTGAAAACTTTGTAACACAGCAttgtttgtgttatattttgtattaattactATGGCATAACTAATATTGTGAAGAGTACCGGAGGGAAACTCAACAAGGAGAATGTATCTAGGTGTTTTTATAAACTCTTGTCTTGTTCATTTTAGATTAGAGCATCGATGTATATAAATCATTTCCTTGTCCATGAAGTCTTCAATAAAACACGTGGAGGCACGCGCAATGTTTTGATTATCCAGattgtattgattttattcGGATGAAACATGTAACACCAAATTAAACTCGCAAAGGGCAGGAATTCAGCGTCAGCACTGTCTCGGATAAACCCAGAAGGTGtcgtttaaaaataaagtctgCTAAGCTCAGAAGTAGTCCTTTTTTTCCGATTTGATATCTCGCGACGATAGATGGAAGGCTACGTGTACGGAAAGccgaaagtttttttttctcgcttTGCATTTCTGTTCAGCGGTTATTTGTTAAAGCCAATGTATCATTTACTGTTGTACAATATGAAACATTtgtctaaataaacattttacttttttattactaaa

Function

symbol description
bmi1b Predicted to enable promoter-specific chromatin binding activity. Acts upstream of or within cerebellum development. Predicted to be located in nucleus. Predicted to be part of PRC1 complex. Human ortholog(s) of this gene implicated in acute myeloid leukemia; colorectal carcinoma; and hepatocellular carcinoma. Orthologous to several human genes including COMMD3-BMI1 (COMMD3-BMI1 readthrough).

NR:

description
PREDICTED: polycomb complex protein BMI-1-B

GO:

id name namespace
GO:0021549 cerebellum development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031519 PcG protein complex cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11459 PCGF4, BMI1; polycomb group RING finger protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259635.1 True 2007 mRNA 0.43 10 10584873 10590460

Neighbor

gene id symbol gene type direction distance location
klhl40a klhl40a,LOC107722643,LOC107688437,LOC107586696,LOC107718175,LOC107689425 coding upstream 50763 10530608 ~ 10534110 (+)
hhatla hhatl,LOC107688529,LOC107722653,LOC107689424,LOC107718176 coding upstream 55954 10522361 ~ 10528919 (+)
plcd1b LOC107688433,LOC107722543,LOC107585437 coding upstream 78833 10494101 ~ 10506040 (+)
ralab ralab,rala,LOC107585502,LOC107718103 coding upstream 138071 10425919 ~ 10446802 (+)
c2h7orf25 zgc:55781,cunh7orf25,LOC107689392,LOC107722560,LOC107718178,LOC107589835,LOC107585545 coding upstream 159427 10422736 ~ 10425446 (+)
nebl nebl,LOC107722518,LOC107688530,LOC107718172,LOC107689428 coding downstream 21530 10611990 ~ 10616296 (+)
nrn1b nrn1b,LOC107722529,LOC107688533,LOC107589820 coding downstream 68141 10658601 ~ 10660461 (+)
rpp40 rpp40,LOC107688445,LOC107722637,LOC107689405 coding downstream 75445 10665905 ~ 10671812 (+)
oxsr1a oxsr1a,LOC107718088,LOC107589819,LOC107722611,LOC107585310,LOC107689410,LOC107688448 coding downstream 102050 10692510 ~ 10702785 (+)
slc22a13a LOC107722499 coding downstream 112786 10703246 ~ 10706943 (+)
LOC122359526 NA non-coding upstream 15865 10567881 ~ 10569008 (+)
G10901 NA non-coding upstream 44883 10421937 ~ 10539990 (+)
G10914 afg3l2,LOC107718155,LOC107688430,LOC107589831 non-coding upstream 101921 10445181 ~ 10482952 (+)
G10918 inhbab,LOC107718177,LOC107589832 non-coding upstream 109590 10470121 ~ 10475283 (+)
G10903 NA non-coding upstream 191723 10392693 ~ 10393150 (+)
G11077 NA non-coding downstream 167596 10758056 ~ 10831642 (+)
LOC122359515 NA non-coding downstream 229651 10820111 ~ 10822197 (+)
G11106 NA non-coding downstream 306223 10896683 ~ 10897497 (+)
G11117 NA non-coding downstream 362590 10953050 ~ 10978280 (+)
G11133 NA non-coding downstream 566078 11156538 ~ 11157341 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other upstream 423064 10158532 ~ 10161809 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other upstream 668012 9911628 ~ 9916861 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other upstream 833661 9746570 ~ 9751212 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 1412958 9162611 ~ 9171915 (+)
G10212 NA other upstream 2477096 8106865 ~ 8107777 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 72269 10662729 ~ 10665110 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 120670 10711130 ~ 10718194 (+)
LOC122359491 tesk2,si:dkeyp-75h12.2,LOC107585988,LOC107679327,LOC107602527,LOC107728975,LOC107714850,LOC107674209,LOC107562290,LOC107668671,LOC107588168,LOC107691921,LOC107753974 other downstream 529394 11119854 ~ 11135991 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other downstream 639300 11229760 ~ 11264234 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other downstream 713218 11303678 ~ 11338469 (+)

Expression


Co-expression Network