rab2a (rab2a)


Basic Information

Item Value
gene id rab2a
gene name rab2a
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10325058 ~ 10336681 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259687.1
TGTTTATTGTTCCTTCCCGTCGAAGAGAGAAAAGGGCTGGCTTTACGGAGGCATATATCACACACATTTTCCCTGCGGTTTTAGCTTCAGGAGCCATTTTAGTAAGGCCGAGACAGGTTAATACGGGACCGGTTGGCCATGGCGTACGCGTATCTCTTCAAATACATCATAATCGGAGACACGGGTGTGGGGAAGTCGTGCctattattacagtttacagATAAGCGCTTTCAGCCAGTGCATGATCTCACTATCGGTGTTGAATTCGGAGCGAGAATGATAACTATAGATGGCAAACAGATAAAACTTCAGATCTGGGATACGGCCGGACAGGAGTCCTTCCGCTCGATCACCAGGTCCTACTACAGAGGTGCAGCTGGGGCTCTGCTAGTTTATGACATCACAAGAAGGGACACCTTTAACCACTTGACAACCTGGTTAGAAGATGCTCGTCAACATTCCAACTCTAACATGGTCATTATGCTCATCGGAAATAAAAGTGATTTGGAGTCACGGAGAGAGGTGAAGAAAGAGGAGGGTGAGGCCTTTGCCAGAGAACATGGACTGATCTTCATGGAAACTTCTGCAAAGACCGCATCAAACGTAGAAGAGgcATTTATCAACACGGCCAAGGAAATTTATGAAAAGATCCAGGAGGGAGTCTTTGATATAAACAATGAGGCTAACGGCATCAAGATTGGACCCCAGCATGCTGCCACCAACTCTACGATGGGCGGCAGTCAGGGAGGACAGCAAGCCGGAGGGGGCTGTTGCTGAGCACTACCCTTTACCCCCCAGTCACCTCCACGTCCCCCTCCGCCCCTTACGTTTCTACTGGACTGGTCGGGCTCACTAACATTTTCTTAACCTCCCACAGCCCAGGCCCCGGATTCAAATCATATGTTAGATGGCTGTCCAAAAcgatacaacaaaaaaaaaaaatatttataaagtccAGGTCCTCTTCAAACCTCCTGACAAACTCCTGAAGCCTGTTTGGGCTACAGCAGACATTATATGGTTACTAGTAAAGAAAAAGACAGGAGCTTTGGAGTAATTATggtaaatatattcatgtttgtttctcagcaagttgtcttttttttctttttttttttttttgcccatttgACTTCAAGCTGAACTGTATTAAACACTACAAAGTCATCTATAgtattttaatcagtttatgTGGGCGAATTCAATGAAAACTGTGGTGAACCCTGAAGTCAAAATAAAAGGAACGTAGAAGCTGGTCTAAAAAAGGAACAGCTGTTATCAAAGTGAAGAagttaaaagaagaagaaaaaagcaggactgttttaaatctgtatttatcaTTCACATTCTGTATATATAGTTATCATTTCTTGCTTTGGTGTACGTTGACCGAGCTAGAATTCTGTACTGAATTTGCTTAAAATTCTATACTGTATGAATAGAGCTTGAAACTGCAGCAGTATTGCGATATTTCCAAAACGCTTCGACACCATTTTAAGGTAAtcttttacttcatttattttttagtttggTCCTGCCATCTGCCTTGACTCCTCGTATCCGTGCCCCCAATCCTCCTCACTGTATAGAAACTCTGGCTCTATATTCCtattttaatgccaaaattgTGTTTACCTGTGTTCTAAAATCATGGCTCCAGATATGGATCACATCTTCAGAACTAGATCTGCTGTTTGCCTTAAAAGATTTTGGgacttcaacaaaaaaaaaagaaataaaataaaacaaataaataacaacatattCATGTTACACAGgatcatttcagtaattacgtgcaattatatattgcatatgaTAACGCTAGACTCACTTATCCATTAGACAGACACTCACGCATACATGCCTATACCTATATATCCATACAAGTCGTCACATATGCATGCGTttgtatgcatataaatatatcttttttttttctctctcgtttCTTCAAAGTTAATTTTCTCCAATGCAGTCCGCTGTGTAAAGTCCGTGCAGATCCACATTAATTTAGGTGTCTGAGTGATTGTGTAAAGACTTGCTTTCTCTTGGCACTATGTTGTTAATAGATATATGGTGAACATCTTGTCTGTTGTGAAAGGGGTGTGATAAAGCCAAACCTGGAGTAACTTTGTGACCCTCGACTTTATTTGCTGTGTTCTCAAATTAAATGCTATCacgaaaaaaatataataaaaccttCTAAACTCA

Function

symbol description
rab2a Predicted to enable GTP binding activity and GTPase activity. Predicted to be active in Golgi membrane. Is expressed in axial mesoderm; nervous system; neural plate; notochord; and solid lens vesicle. Orthologous to human RAB2A (RAB2A, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-2A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07877 RAB2A; Ras-related protein Rab-2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259687.1 True 2214 mRNA 0.40 8 10325058 10336681

Neighbor

gene id symbol gene type direction distance location
LOC122355329 cyp7a1,LOC107722516,LOC107693703,LOC107586715,LOC107691428,LOC107589909,LOC107718110 coding upstream 109191 10212891 ~ 10215867 (+)
fam110b fam110b,LOC107585622,LOC107722620,LOC107693712,LOC107691438,LOC107589841,LOC107718111 coding upstream 126782 10168240 ~ 10198276 (+)
gtf2b gtf2b,LOC107693714,LOC107585659,LOC107718116 coding upstream 205119 10114573 ~ 10119939 (+)
znf644a LOC107722621,LOC107693692,LOC107589847,LOC107586139 coding upstream 217634 10096409 ~ 10107424 (+)
cldn18 LOC107722530,LOC107693705,LOC107718157,LOC107586152,LOC107589887 coding upstream 245113 10078400 ~ 10079945 (+)
chd7 chd7,LOC107722533,LOC107718105,LOC107689390,LOC107589837,LOC107585562,LOC107688517 coding downstream 842 10337523 ~ 10378222 (+)
c2h7orf25 zgc:55781,cunh7orf25,LOC107689392,LOC107722560,LOC107718178,LOC107589835,LOC107585545 coding downstream 86055 10422736 ~ 10425446 (+)
ralab ralab,rala,LOC107585502,LOC107718103 coding downstream 89238 10425919 ~ 10446802 (+)
plcd1b LOC107688433,LOC107722543,LOC107585437 coding downstream 157420 10494101 ~ 10506040 (+)
hhatla hhatl,LOC107688529,LOC107722653,LOC107689424,LOC107718176 coding downstream 185680 10522361 ~ 10528919 (+)
G10883 NA non-coding upstream 115207 10209563 ~ 10209851 (+)
G10838 NA non-coding upstream 183087 10141342 ~ 10141971 (+)
G10819 NA non-coding upstream 261244 10058532 ~ 10063814 (+)
G10753 NA non-coding upstream 309236 10014559 ~ 10015822 (+)
G10752 NA non-coding upstream 310692 10011937 ~ 10014366 (+)
G10902 NA non-coding downstream 54988 10391669 ~ 10391956 (+)
G10903 NA non-coding downstream 56012 10392693 ~ 10393150 (+)
G10901 NA non-coding downstream 85256 10421937 ~ 10539990 (+)
G10914 afg3l2,LOC107718155,LOC107688430,LOC107589831 non-coding downstream 108500 10445181 ~ 10482952 (+)
G10918 inhbab,LOC107718177,LOC107589832 non-coding downstream 133440 10470121 ~ 10475283 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other upstream 163249 10158532 ~ 10161809 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other upstream 408197 9911628 ~ 9916861 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other upstream 573846 9746570 ~ 9751212 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 1153143 9162611 ~ 9171915 (+)
G10212 NA other upstream 2217281 8106865 ~ 8107777 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 326048 10662729 ~ 10665110 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 374449 10711130 ~ 10718194 (+)
LOC122359491 tesk2,si:dkeyp-75h12.2,LOC107585988,LOC107679327,LOC107602527,LOC107728975,LOC107714850,LOC107674209,LOC107562290,LOC107668671,LOC107588168,LOC107691921,LOC107753974 other downstream 783173 11119854 ~ 11135991 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other downstream 893079 11229760 ~ 11264234 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other downstream 966997 11303678 ~ 11338469 (+)

Expression


Co-expression Network