nrn1b (nrn1b,LOC107722529,LOC107688533,LOC107589820)


Basic Information

Item Value
gene id nrn1b
gene name nrn1b,LOC107722529,LOC107688533,LOC107589820
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10658601 ~ 10660461 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259743.1
AATAAAACATGACCTTATCCCGACAAACAGGCAGAACGCAATACAAGGCGTGACGTCATAACGCGAGGTTTTGTCAGTCAGGTGCACGCTGACGTCATCACGGCGCAAGAAAGTAAAGGAGGAGCGAGAGCGTAGGTGACTCTCCGCGGTCCGCTTCATCTCGGGCGGCTGTGGGAAATCCGTGACAGAAGTTGTTTCGTTCCTCGTGAAATGCAGCGGTTCGCTGGGGAAAGGGAGTAGAGCGCAGACATCCTCCACGGAGCGCTGCTTCTGTCAGGCGTAGGATGGGACCGACTTGGACCGACAAATACAACTCGATACTTTTCACACTGGAATTGGtttcacTGTTGCAGGCAGCATGTGCTGGAGGAACATGCGAAAACGTATTTAAAGGTTTCTCTGACTGCCTGCTCAGCCTTGGAGAAAACATGGTGAGCTATCCCCAAGAGCTGGATGACAGCGAAAACCTACAGACCATCTGCTCATATTGGAATGACTTCCACTCGTGTGCCTCCACCGCAATCGCGGATTGTCAAGAAGGAGCAACAGACCTCTGGGAGAAATTGAAGCTGCAGTCCCGGAGCTTGAACTATCAGGGAAGCTTGTTTGAATTATGCTCCGGGGATAATGGAGTATCCAGAGTATTATTACCAATGGAACTGAAGATACTGATGATGTGTTTTACCGCACTGGTGGCTTGGTTTGCTTTTGAGTAATAAATCTGAAGATCTGACCCGAAACAAGTTACAGAACGGATAACACGCATCCCTGTTTCTGTAAATGTTTGGATTCACGTGATATGATGATGATTATGCTAAATAATAGGACTTATTGGCGCTCGTTGACCTTTGGAAGAACTCACAAGTAACTCTAAAAATGGCTTACcaaaatttgaaaatgatttaagatattatattataatatataatactgtattATATGAAAACATATTATTCACATATTATATTAGGTAAAAACTCAATAATTCTGCAATGAGGAcctagttttattattattattaatagcacactttaaatacatgttatttTCTGATAGCACATATTTAACATCACAGATCTGcccaaaaaaactgtttattttaatacagtataAGATAACGACGTTTACTTGTAAATGTATACTTATAAACTAAAAAGGCATTTGGCCAAACTTTAGAAAAGTGTCTTATCTTTTGCTGAAACTCAAACAAACATGactcaaataaatcaaatatttgaataaaa

Function

symbol description
nrn1b Predicted to be involved in neuron projection extension. Predicted to act upstream of or within nervous system development. Predicted to be located in plasma membrane. Predicted to be anchored component of plasma membrane. Orthologous to human NRN1 (neuritin 1).

NR:

description
PREDICTED: neuritin-like

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259743.1 True 1244 mRNA 0.41 4 10658601 10660461

Neighbor

gene id symbol gene type direction distance location
nebl nebl,LOC107722518,LOC107688530,LOC107718172,LOC107689428 coding upstream 42305 10611990 ~ 10616296 (+)
bmi1b bmi1b,LOC107585379,LOC107688441,LOC107689401 coding upstream 68141 10584873 ~ 10590460 (+)
klhl40a klhl40a,LOC107722643,LOC107688437,LOC107586696,LOC107718175,LOC107689425 coding upstream 124491 10530608 ~ 10534110 (+)
hhatla hhatl,LOC107688529,LOC107722653,LOC107689424,LOC107718176 coding upstream 129682 10522361 ~ 10528919 (+)
plcd1b LOC107688433,LOC107722543,LOC107585437 coding upstream 152561 10494101 ~ 10506040 (+)
rpp40 rpp40,LOC107688445,LOC107722637,LOC107689405 coding downstream 5444 10665905 ~ 10671812 (+)
oxsr1a oxsr1a,LOC107718088,LOC107589819,LOC107722611,LOC107585310,LOC107689410,LOC107688448 coding downstream 32049 10692510 ~ 10702785 (+)
slc22a13a LOC107722499 coding downstream 42785 10703246 ~ 10706943 (+)
csrnp1a LOC107722574,LOC107585280,LOC107689421,LOC107589814,LOC107718084,LOC107683225,LOC107688521 coding downstream 73455 10733916 ~ 10741971 (+)
gorasp1a LOC107688453,LOC107722575,LOC107585269,LOC107689416,LOC107589815,LOC107718085 coding downstream 82024 10742485 ~ 10748341 (+)
LOC122359526 NA non-coding upstream 89593 10567881 ~ 10569008 (+)
G10901 NA non-coding upstream 118611 10421937 ~ 10539990 (+)
G10914 afg3l2,LOC107718155,LOC107688430,LOC107589831 non-coding upstream 175649 10445181 ~ 10482952 (+)
G10918 inhbab,LOC107718177,LOC107589832 non-coding upstream 183318 10470121 ~ 10475283 (+)
G10903 NA non-coding upstream 265451 10392693 ~ 10393150 (+)
G11077 NA non-coding downstream 97595 10758056 ~ 10831642 (+)
LOC122359515 NA non-coding downstream 159650 10820111 ~ 10822197 (+)
G11106 NA non-coding downstream 236222 10896683 ~ 10897497 (+)
G11117 NA non-coding downstream 292589 10953050 ~ 10978280 (+)
G11133 NA non-coding downstream 496077 11156538 ~ 11157341 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other upstream 496792 10158532 ~ 10161809 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other upstream 741740 9911628 ~ 9916861 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other upstream 907389 9746570 ~ 9751212 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 1486686 9162611 ~ 9171915 (+)
G10212 NA other upstream 2550824 8106865 ~ 8107777 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 2268 10662729 ~ 10665110 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 50669 10711130 ~ 10718194 (+)
LOC122359491 tesk2,si:dkeyp-75h12.2,LOC107585988,LOC107679327,LOC107602527,LOC107728975,LOC107714850,LOC107674209,LOC107562290,LOC107668671,LOC107588168,LOC107691921,LOC107753974 other downstream 459393 11119854 ~ 11135991 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other downstream 569299 11229760 ~ 11264234 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other downstream 643217 11303678 ~ 11338469 (+)

Expression


Co-expression Network