nectin4b (LOC107726329,LOC107696495,LOC107671794)


Basic Information

Item Value
gene id nectin4b
gene name LOC107726329,LOC107696495,LOC107671794
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22696081 ~ 22717815 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259982.1
AGGAGCttgcctcttttttttataaacgtgTAGAAACCCACCGCGGTCTTGCTCTGGTGTAAAGAGAAGAGGTTTACGGTCCGGGGCTCGGATCAAAGGTCAGCGGGTGTTTACGCGTGCGGGCGGGAGCGCGCGCGCAGAAGGAGTGGGCGGGGCCTACGCGAAGCCGCAGGTGTGTGAACGCTCACCTGAGCGCGTTCGAACGGGTTTGAACGCGTGAACTGACTTCAAACGGAGTTCAATCATGAGTTCATCAGCACCGGGGTCGTCCCGTACGCGTTCAGCTCGCGCTTCGTGACACAACTGCACGTTCACGtcgcatgctttttttttttttttttggattttaagACCGTTTTGAGATGGATTGAGAGGAGAAGCGAAGGTGAAAACATGAGTAGATGTGTTGAGGGATAACAGAGAAATATACTGACAAAATAAACCAGCAACATGGCGACAGTGCCGACCTGCATCATCGGTGTGATGGTCTTCAGATTGATGGtgtgtgtccGCAGTGAGTTCCTGGAGCCGTCTCCGTCCCTGGCCCTGCGCTCGTTCTCCGGCACGCAGACCCGGCTGCCCTGCCGCTTCAGGGTGGAGGCCGAGGAAAAGGTGGTGCAAGTGACCTGGTCCAGACAGAAACCAGGAGGAGAACGAGAACAGATTATCGTCGGACACTTTACTGAAGGACCTacagTGTCTCCTGATTTTGTGAGCCGTGTTGAGTTCGAGAGCTCCGACCCGACGGCCGACTCCACGCTGCTCCTCCTGGACACCAGGAAGGCCGATCAGGCCGCGTACACCTGCCACGTCTCCATCTTTCCCTCCGGAAGCTTCGAGAGACAAATCCGTCTGACCGTCTGGAtttTGCCGATCTCTTCTCTGGAGTCGGTGGTTCTGGAGGAAGGCCAGTCGTTCCGGCCCGCGGCTCTCTGTCGAGCGGTTGGTCATCCTCCGCCGCGTCTGTCCTGGGACACGGACCTCCCCGGGCAGTCTCAGAACCGGACCGGAGAGGATGGAGTGGTAATCTCTCAGTTCTCTCTTCACCCGCTGCGCAGCATGAACGGACGGAGACTGGACTGTCTGGTCTGGCACCCGGCTCTGGACGCTCCGCACCGAATCAGCAACCAGCTCGCGGTGCACTTTCCTCCTGATGCGGTGATCTCTGATTCTGGTTCCTGGAGACTCGGACACTCGGGGTCAGAGCTCAGGTGTGTGGTGAAAGGAAGCCCGCTGCCTCAAAACATCACATGGAGCAGgaagGACGGCCCTCTTCCGGCGGGAGTGTTGGTTGAGGTGGACAGACTGGTGTTTGTGAGAGCTCTGAACGTGACGGATGAAGGCGTGTACATCTGCCAGGCTTCAAACGGCGTGGGAATCGCTAAAGCCGAGTTCAAAGTGGAGATCGGAAACCGCCGGCTCGAGGTGACGGACACTCCCCAGGATTCAGAGACTCTCCTCATCTTCATAGGAGCGTCTGTCGCCGGGGTTCTGGTCGTCGTCATCGCGATCGCTATCGTCTTCGTTAACTGTCACCTTAGACGCAAGAACCGGAAGCTGAAACGAGCGCTCAGCGCCAGAACgGAGGAGATGATCAGTCTGTCCAGACAGGTGTCCATGAGGAGACTCAACTCCATCAACGGAGACCCCAGGACAGCGGAGGAGAGTTCACTGGTTCAGATGGACAGTGTGACGAAGGGCAGTGTTTTATCTGTGGAGGATCGTTCGACGCTGAGCGACGTGAAAGGCAGACGCGGAGATGGAGAGTATGACAGTCTGGGACGTCCCGCCATCTACATGCCGTACCGGCCCGAGCGATCCAGTAAGAAGATCAGAGACATCGAGGAGGAGAGGAACGAGCGCAGACGGAGAGTCGAGTCCTACGTCAAATCCAGCAACATGTCactgGATTCGGGGCTCTCTCCTCCTCCGTCCGTGAGCTCGGGTCCGACCGCAGACGTGACCGGTGACGGATGGAAGCGCGGCTCCCGTCGAGAGATCCACCGAGAGAGAGACTTACAGCGAGAGCGACTTCCTGAAGGAGAAGAGGAGAGCTGTGGGGTGAACTATCACCTGTCCGAGGCCGTCTCCAACTACTTCCAGTGCAGCAACGGCGGCCTGACGCCGAAAGCCAACCCCAACGCCATCATCATCCACTCACGAGGACAGGTCATGTGATCAGcactcttaaagggacagttcgcgCAAAAACTCTCGTGTCGTTCCTTGCGTTTCGTAAAGCGTCCACGTTCGAAACgacgccactgaataaaaaattaaaattaaaataaatctgccttttttaaagaattgcgcgatataaaattgcaattgcgtataaactcaaaattgtgagttataaagtcggAATTGCattggtaaaaaaaagtcagttgCATGATATAAGCTCGAAATTGAAattctcgcaattctgactttataacgcAATTGCAAGTATTAAGAGAAAATAAGTATCGCGTGAGTTGGTGTCACGCAAtactgaggggaaaaaatgctaaaaattatGAGAGAAAGTCAcaataatctttttattttattttttatttttggcagaaACAGGTTTCCATACAGACGTCTTCTGCGTGAATAATAGTTAGGGCTAATTTTATCAATTAAAATTTCGATTCTGATTCTGCTTGATTCCGGTTCTTATTACTTTCATTGTGGTTAAAGGAAAACGAAGTCTGACGTATTTGTTCTGGCtgtttttgcaaaacatttaaaaaccgGACTCCATTAAgagctgtttgtgtgcaaaagtttttaaatggaGTTTGTTGCTTTCAcagttttgaagaaaaaaacgcTAAAATTGGAATTATCCAGGGAAAACTTGCTTCGTTACTGGATGAATCTGTTTGGACGAATctcttgaatgaatgattcaaaggCAGATACATTTTTAGTAGTCATTtccagcagaaaaaaaatgtaaatatcacacAGATGCAAttgaaagtttttatttcacaagtATCTGATTCTGGAATAAGAATTGATTTTTTGATTACCAACCCTAATAATAGAGTTAACTGATTTAAGCTGCTGTTCACTGATTATCTCTTAGCTTATAAAGTctcataaaaccataaaaataaataaataaaaatatatatatatatatatatatatatttatttttttttttttttttttttttttttttttttttttacaaatatttgtattcgTAATAGTTGCAAAGGCAGTGTTTCGTTTagtttaagtactaaaataaaatggaaaaaaaatgccgAAATAAAAAATAcgtaatttattttagttcgGCTGCCAGTGCAACGTTTTtgagtttaaattaaaaacctgaaacttaaaaaaaaaagctttttgaatttaaaaatgactaatgaaATTACAAACGACTAacatgaaaactaaataaaacccaAATATCGGTGATAGTAAGATATCGTGGTTCGTGTTGGTTCACAGAGCATTGATGCTAGAACGTTTGATTTTAAAGAAGCATTAATTAATGTTGAAATCAACACAAGATCATTAAATATCGTTGATTGTTAGgtactaatgttaacaaaagagAAAGTGTGCATGAGTTTCATTACATAGACAAAATTATATGAAGATTTTCtcctgttttagtttttagtggCTGAATGAAActtgggtttggaacgacacgattGTTTTTGTTAGTCTGAACTGTTCCTTAAAGCAGACACCCGGCTCAAGCTCTCATCTCTAAGTGCATGCGGTGATGTCTGGATCTCTAGAGGAGACGTACAGTAAGACGAACTCCATCCAGCACAGACGTTTATAAAGGTTTTCTACTGAACCAGGTCTACCTCTGCAACCAGCTCAACAAAAACTTAGGACACTTTCttgtattatactgtataatcACCGTGACCGATTTATATTTACTTCACGAAGACTCCGACGCTGTATTCTCTTTTACAGTATTGCACTATTTGTAAATGTTCGTGTCAATGTGCTGTCGGTGACTAGCAGGTGTTTTTTACTGTTGACATGACGTGTTtattcaaagaaagaaagaaagatgattgATCTGTGAAGAGATTTAATAAGAGTTAATGTGAATGAAGATACAGAAATAAAGAGTGGATGAAAGGCACAGCGGTGGTGTTTTCACTAGAGATGCACCGATAGGAAATGACTGCAGATATCGATAGTAAAGAAATCCCTTTTAACCCTAACTGTAAACTACAGGGAACCCTTTCAGTTGATTTAGATTACAgctatatttttatgcatgataaaaacatttagttgCACGATCGGGTAGTTCTCATAACCTGATTTATCCAAACATTGAGTATATAATACGTCACAGTATTTAAGCTTTCTTGTCATTTTATAGCTTACTGACGAACCGTGAACGATAAAGTAAATGCATCGTTAAGTAACAGTTTACAAGCTGTTTTATTGACATTTCTGTTGATTATTTTAGTTCGGCTGCAAGTGCAACGTTTATATtgagtttaaattaaaaacctgaaactaaaaatgactaaaaatgactAATGAAATTACAGGCGGCTAGAACTTTAacatgaaaactaaataaaacccaAATATCGGTGATAGTAAGATATCGTGGTTCGTGTTGGTTCACAGAGCATTGATGCTAGAACGTTTGATTTTAAAGAAGCACTAATTAATGTTGAAATCAACACAAGATCATTAAATATCGTTGATTATGAGAATTATATTAGTTGTATCTTTCAGCACCTTTCGATGGTCTGTTTTGTGCTATAACTTATAATAAAGTACAAGAGACTCTGAGGCACTGCCAGAGCgtcaaaattacaaatattgtttggattttgcaattaaaatgtacagGATTTTAAGTAAAAA

Function

NR:

description
PREDICTED: nectin-4-like

GO: NA

KEGG:

id description
K06593 PVRL4; poliovirus receptor-related 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259982.1 True 4881 mRNA 0.43 11 22696081 22717815

Neighbor

gene id symbol gene type direction distance location
ncstn ncstn,LOC107552665,LOC107671788,LOC107696591,LOC107726318 coding upstream 7765 22672101 ~ 22688316 (+)
pnp5b pnp5b,LOC107730396,LOC107574318,LOC107750205,LOC107549813,LOC107684565 coding upstream 30169 22659064 ~ 22665912 (+)
foxl2b LOC107574316,LOC107730743,LOC107683772,LOC107750224,LOC107549802,LOC107684570 coding upstream 55487 22638886 ~ 22640594 (+)
LOC122323627 NA coding upstream 94627 22592599 ~ 22601454 (+)
LOC122357060 NA coding upstream 124081 22562512 ~ 22572000 (+)
si:dkeyp-68b7.12 LOC107696752,LOC107552668 coding downstream 12859 22730674 ~ 22751530 (+)
si:dkeyp-68b7.5 LOC107726324,LOC107671818,LOC107696531,LOC107552690,LOC107549807,LOC107750223 coding downstream 34938 22752753 ~ 22757673 (+)
tpgs1 tpgs1 coding downstream 52734 22770549 ~ 22773756 (+)
sf3a2 sf3a2,LOC107726326,LOC107696543,LOC107671791,LOC107750226 coding downstream 63008 22780823 ~ 22784846 (+)
LOC122328301 LOC107696585,LOC107552683,LOC107724989,LOC107549819,LOC107671817,LOC100151059,LOC108427150 coding downstream 115253 22833068 ~ 22870972 (+)
G14549 NA non-coding upstream 45238 22643795 ~ 22650843 (+)
G14541 NA non-coding upstream 109831 22522411 ~ 22586250 (+)
G14542 NA non-coding upstream 117858 22577023 ~ 22578223 (+)
G14540 NA non-coding upstream 182144 22512171 ~ 22513937 (+)
G14535 NA non-coding upstream 219879 22475781 ~ 22476202 (+)
G14578 NA non-coding downstream 24612 22742427 ~ 22786013 (+)
G14553 NA non-coding downstream 58425 22776240 ~ 22777003 (+)
LOC122357472 NA non-coding downstream 68906 22786721 ~ 22802473 (+)
LOC122328317 NA non-coding downstream 95451 22813266 ~ 22829545 (+)
G14589 NA non-coding downstream 130098 22847913 ~ 22879465 (+)
fcer1gl LOC107671799 other upstream 751 22691199 ~ 22695330 (+)
LOC122327931 NA other upstream 21806 22633529 ~ 22674275 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other upstream 210426 22461916 ~ 22485655 (+)
fndc7a fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736 other upstream 828682 21857212 ~ 21867399 (+)
G14471 NA other upstream 834639 21860891 ~ 21861442 (+)
LOC122324535 NA other downstream 285350 23003165 ~ 23005254 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other downstream 827291 23545106 ~ 23547974 (+)
LOC122323670 NA other downstream 1218106 23935921 ~ 23939016 (+)
LOC122327416 LOC107728372,LOC107569261,LOC107681443 other downstream 1327870 24045685 ~ 24048465 (+)
LOC122327425 LOC107728372,LOC107569261,LOC107681443 other downstream 1341597 24059412 ~ 24062202 (+)

Expression


Co-expression Network