arhgap12a (LOC107659443,LOC107749196,LOC107557799)


Basic Information

Item Value
gene id arhgap12a
gene name LOC107659443,LOC107749196,LOC107557799
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21185209 ~ 21204873 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260565.1
TCAGGAGCGCGTGGGAGCGCGCTTGTGGGGAAAGTGGGCGCGAGCGTGTCGGAGGAGTTCGCTCGCGCCGCGGCTCAGGAACAAGGAACTTCGACGCTCGGCTGCCCAGCGAAACCAATGAACGCCAGTTCGGCCGCGTTTCTTCAGCCCTAGCCCACGAAACACCTGGAATATCTCGTCAGcTGATTCCGTATCAACCCCACAGACCTCACCATGCTTCACTTCTTCTACTATTGACCTTTGAACTCTGACAGCAATGGCAGACCGCTCTGTGGCTCCAGGTCAGACGTACATAGAGGTGGAGTATGACTACGAGTACAAATCCAAAGACCGTTTGATCACCATTAAACAGGGGGAAAGTTACCTGCTTGTGAAGAAGTCCAATGAAGACTGGTGGCAGGTGCGCAAGGACGAGACCAGTAAACCCTTCTATGTCCCAGCGCAGTATGTGAGGGAGGTGCGCCGTGCTCTCATGCCCCCCCCTAAACCTCTGAGTGCAGCAGGTCGAGGGGGGACTGGACCCATTCGACCATCTGGCCTGGACATTCCACGGccagatgaaaacaaaaaaagcctgtGTCCCTCTCCCTCTGGCAATGCTTTACTGCCACCCAGGGATGACAGAGGCAGCCCAGGCAGCCCGAAGGCTCTCATCCCTCCCACACAAACTAACACTTCACCTGGCACACTTCCCCGTTCCAGAGCCGAGTCCCCAAGACGCCAAGTAGATGGAGAGAAAGATAAAGAGTTTGAGAAGAGCAGTCGAGAAAAAGGTGCGATTCATGAAGAGTTTGCCGGAGAGGACGGCGGCCTGGATAAGAACCGAAATGATTCAGAATCCGGGGATGATCTCAGTAGCGGTTCAACTGATAACCTACAGACTTTAGGTCCAGGGCAGGGCAGGCCTGACTCTCCTGTCTACACAAACCTGCAGGAGCTGAAGATCTCTCAGTCCTCAGCCCCTCCACTGCcatcctcctctcctctccacaCCAATGGCGACTGGGAGACTCACAAAGACCAGAATGGCAGACACTTCTACTACAATCGCAGCACGCAGGAGAGGACCTGGAAACCCCCACGGGCACGGGACAGCCTCACCAGGAAAGAGGAGAAACAAGACATGACTGACACAGAGGTTCTATCATCGGAGGAAAACTGTCTGAGCAGCCAATCAGACAGCCAGTACGGTTCGCCCCCTAGAGGCTGGTCTGAGGAAATGGATGAGCATGGACACACACTCTATGTGTCTGACTATACTAATGAGAAGtggTTGAGACACACAGATGAGCGAGGCCGGCTGTATTACTACAGCGCAGATGGCTCCAGATCTGAGTGGGAGCTTCCTAAAATCGGTCTCAAATCACAGTCCAATCACTCACCTCTGCTACCAGGAGATGCGCACAAAACTCGTAGTCTCGACCGGAGACTGCCTGATTCCATTCCTATCAGGACGAGACACAGCGTATATTTACACGAGTCCAATGACAAGTTAAAACAGAAATCTGTCAAGGATCGGCGAACCTTACCCCCGCACCGCAAAAGCACCTTCCGCTCTCACCCTTACAGGCCACAAGACACCAAAACTGGCTCACCTGACTCTGACTCCTCCTGTCCCTCCTCTCCTAAACCCCCACACTCTCCATCAGAGAAATGTGGCACTTTAAACATGACTAAAATCACTGAACATGGAAAGAAGGTCCGGAAGAGCTGGACCTCCTATTGGACAGTTTTGCAGGGTTCTTCGTTACAATTTAATAAGGGCCAAGGGGGTGGGACTGGTTGGTTTGGTAGAGACCAGAAACTGGAGTTTAGTGTGGAACTCAAAGGAGGTTCAGTGGACTGGGCTTCCAAAGACAAATCCAGCAAGAAACATGTTCTAGAGCTGAAGACTCGACAGGGCATGGAGCTCCTCTTGCAGTCAGATAACGATATCATCAATGAGTGGCTCAAGGCTTTAAATGAAGCCATACATGCATACGCTTGGGAGTCCGATGAGGCCATTGAAGAAGACATGCCAGAATCTCCTGATACTGAGAAGCAtgacaaagaaaaagagcaaagaaacTCCAAAAAGGGTAGAGATATTAAGAAATCCATAAGCATGGATAATGcagaacagaagaagaagacCAAACTGATGAAGCTTCTCACTGGCAGACCCACTTTACAGGCCGTCAAAGACAAGGGTTACATTAAAGATCAGGTGTTTGGCTCTAGTTTGAGCAGTCTTTGTCAGAGAGAAAGTACCACTGTCCCTCACTTTGTCTCAATGTGTATTgagcaggtggagaaaaacgGGTTAGGAGTGGATGGTCTGTACAGAGTCAGTGGAAATTTGGCCATTATACAAAAACTGAGATTTGCTGTTAATCACGATGAGACAGTGGATTTAGGTGACAGTAAATGGGAGGACATTCACGTGACCACTGGAGCCCTGAAGATGTTTTTCCGTGAGCTGCCCGAACCTCTCTTCCCCTACGCTTTCTTCAACAACTTCATCACAGCTATCAaaatgCCAGATTATAAACAGAAGGTCCAGACAGTTAAAGATCTGATGAAGCAACTGCCACGGCCAAACCACGACACCATACAGGCCCTCTTCAAACACTTGAAAAAAGTAATCCAGCACGTCGACGTGAACAGGATGACCACACAGAGCGTAGCGATCGTGTTCGGCCCCACTCTTTTACGGCCAGAGGTAGAGACGGCAAATATGGCCGTGCACATGGTGTACCAGAATCAGATTGTTGAGCTCGTTCTTATGGAATACGAGACCATATTCGGCAGGTAGGATCCCTTTGACCAGACCCAACGGGAAAGTTACTGCTGAAGACCGAACAGCCCTTTGACTGCCAGTCTCAACACTGAGCATGTTTGGTATGTTTACATGAGAGGAACACCCGTATTAGAAAAATAACGTTCTGGGTTCAAATTAAACAGTCAATTCCTTTCTCATATCTTTATTCGACTAAATaatagtcatttttttcttgGCTCGATGtcgtattatttttttatatagcaaaTTACATTGGACTATGTCATTTTTGGACCATCCTTGGATTTATTTGGAGCAATGAGGGCTTGAAATATGAACGTTTTCTGACCGACTGAATGGGAGAGATCTGATGCTTCTAGATTTCCGTTCACTACAAGTGCTACATTTTGCATCACATTTTCCTTGGTAATATGGTTTGGAAAAACACATCAACTGACTGGCTGTCCTGACAAACATGGATTTTATACTATCCTAACAACTCATTTTCCTGGGAATGGATTGTACCCCTGAGATGATAGCTGCTTGGAAAAACTGGAGTTCTTGTGTAGAATCTCAAGATTGGGATACACACTCTTTTATTTGAGTCTTGCCCTCAATTTCCTGATTACTGATCCAATATCAAAGGATATAAAAGCTTCTGAGCTATGAAAATATGTCAAGCATATTTCAGGCTGTGTGAATGCATCTGTGCCCTTCGGTCTTTGGAGAGACGCTGAAATGAAATGTGTGCAGGACACGTTTTACCCCATGATGATTTAGACTCGCTACCGATCCTGACCAGATCCTAGTCATGCATTGAAAATTCAGCCAGCCTATTTAATACGAGTACTGTATGCTGTAGACAGAATAACATGTCAAGATCCTGTAttagagagagaggagaaattGTGAGTGCGTGAAACTTTGTAAAGATGTCTGATGGACATGCTGTGTGTAAAGAGTAAAAAGAGAACATGGAGGTTAAGACGCCACAACTGTATTACTATAGAGAcacgtttattaaaatgttttaatgacaattaattCAAATATGGTTATTTGGTAAATGGCTGTTGAATGTAATTTGTCAAATGTTCTGCTGTATGTTGCCGAGGTTTGTcttgatcaaaataaaattgacaAGGCTAA

Function

NR:

description
PREDICTED: rho GTPase-activating protein 12-like isoform X1

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K19844 BEM2; GTPase-activating protein BEM2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260565.1 True 3910 mRNA 0.47 20 21185209 21204873

Neighbor

gene id symbol gene type direction distance location
epc1b epc1b,LOC107563811,LOC107690579 coding upstream 39919 21131009 ~ 21145290 (+)
LOC122356829 itgb1b.1,LOC107749109,LOC107563812,LOC107690580,LOC107721729,LOC107660233 coding upstream 54880 21123039 ~ 21130329 (+)
itgb1b.2 LOC107749109,LOC107563812 coding upstream 62455 21116469 ~ 21122754 (+)
LOC122359068 itgb1b,LOC107749113,LOC107563813,LOC107659805,LOC107690578 coding upstream 69210 21099685 ~ 21115999 (+)
LOC122362210 nrp1b,LOC107659377,LOC107749105,LOC107721698,LOC107690577 coding upstream 89644 21073085 ~ 21095565 (+)
nlrb5 NA coding downstream 22450 21227323 ~ 21246000 (+)
zgc:152670 NA coding downstream 186245 21391118 ~ 21397540 (+)
kcnab1b kcnab1b,LOC107600068,LOC107721779,LOC107557878,LOC107692887,LOC107749128,LOC108428302,LOC108280191,LOC104919203 coding downstream 218953 21423826 ~ 21462693 (+)
pask LOC107749168,LOC107600066,LOC107659937,LOC107692875,LOC107721791 coding downstream 257925 21462798 ~ 21474564 (+)
mterf4 LOC107749141,LOC107659952,LOC107721702,LOC107600070 coding downstream 269738 21474611 ~ 21477524 (+)
G13983 kif5b,LOC108232928,LOC106522897,LOC106906931,LOC103138015,LOC106962517,LOC103479480,LOC101155960 non-coding upstream 16322 21166088 ~ 21168887 (+)
G13995 LOC107749107,LOC107659422,LOC107563825 non-coding upstream 31427 21152103 ~ 21153782 (+)
G13994 NA non-coding upstream 34073 21150658 ~ 21151136 (+)
G13993 NA non-coding upstream 35202 21149221 ~ 21150007 (+)
G13992 NA non-coding upstream 36697 21148180 ~ 21148512 (+)
G14234 NA non-coding downstream 137498 21342371 ~ 21346101 (+)
G14212 LOC107557873,LOC107721701 non-coding downstream 160935 21365808 ~ 21370499 (+)
G14285 NA non-coding downstream 351971 21556844 ~ 21557398 (+)
G14315 NA non-coding downstream 511898 21716771 ~ 21717992 (+)
G14316 NA non-coding downstream 515045 21719918 ~ 21720575 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other upstream 20387 21163942 ~ 21164822 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other upstream 676818 20493174 ~ 20508391 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other upstream 699991 20481664 ~ 20485218 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other upstream 711685 20467268 ~ 20473524 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other upstream 755861 20416203 ~ 20429348 (+)
G14211 NA other downstream 102534 21307407 ~ 21361708 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other downstream 276261 21481134 ~ 21482642 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other downstream 328372 21533245 ~ 21621097 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other downstream 509810 21714683 ~ 21716290 (+)
LOC122327294 aknad1,LOC107749213,LOC107660326,LOC107730428,LOC107671582 other downstream 638702 21843575 ~ 21853007 (+)

Expression


Co-expression Network