odr4 (c2h1orf27,LOC107693744,LOC107722540,LOC107718140,LOC107589896)


Basic Information

Item Value
gene id odr4
gene name c2h1orf27,LOC107693744,LOC107722540,LOC107718140,LOC107589896
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9702238 ~ 9709851 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261048.1
CGGGCCTGCAGGAGTGTCGTCCAATCAGGTCTCTCGAACTGAGGAGCGTGTATGAGATGCGACGACGTGTCACACGTAGTGGGTCCACTGAGAAGTCATCAGCTGTCTGAAGAAGTGTGCGTGATCTGAAGAAAATGGGTAGGAGTTATTTTGTAGATGAAGCTGTGGAGGAATATCTTGGTGGGCTTCAGGCAGCTCCTGGATCATGTGTGACCGGACTCCTGGCTGGTCAAtcgTCTCCTCAGAGAGATTTCGTGGTGCTGGCTGTGCAGACTCCTCAAAGGGAGAGCGAGGGGCGGCCCAAGGCTTCGAAAGGGGTCAGCCCACTGGATGACATTGATGTGGAGTGGGTCACAGAACACGCCAAGCAGGTGTCCCGCATGCTACCGGGAGGTCTTTGCATTCTTGGTCTGTTTTTAGTGACCCCACCTGAACTCTCCAAAGACGcccaaaatgcattaaaaaggCTTATATTTGCCATGGATAAATACATAACTAAAGGAAGATTGTGGGAACTGTCAGAGGAGGATGTGACTGATCGAGTAACCCTGCATATCTGCTCCAAAACAAAGAAACTTGTCTGCAAAACATTTGATGTAAAAGATCCAAAGAGTTCATCCAAGCCAGCAGACTGGAAGTATCAAGCAGGCATCTCATCATCTTGGCCCATGCTGACCTGCTCTGTTGAGGTGGATCTGCTCATCCCTGTGACAGGATCTTCTTCTGATAACACAGACAAGTGCATGAagGATGGTCTTAGGAGGTGGGCTAAACAGATCGAGGCTGCTTACTGTCTCATAAATGGCAGACAGGCGTTAGATGACTCTGAACTTCTATCAGGACAGaaaAAGAACCTAAAAACATCCCATCGTCAGTCACTGCCAGCACGGATCTTTGTCTCAGATGAACAATCAGAGCTGGATGAGCGGAGCAGTGCTCTGGTTCAGGTGTGTAGCAGCTCAATGAGGGTTCGAGGGGTGGTTCACTGCAGGGCCTACATCCACAACAACAAACCCAAAGCCAGACATGCAGCACAGGCCATTAAGAGGGACATCATAAACACAGTTTGCTCCAGAGTGGAGATGCTTCTGGAAGATCTTTTAATGAATGAAGGGAGTCAAAAAGGTTTATGCAGTGGGCAGCAGGCCCTTCCTCGGCGAGTGTTTGCACCAATACCCATCTCcggtctgtctgtgtgtgactACATGTTCCCAGACGAAGGCACAGCTGATGTGGCCGAACGTCTCAAAGAGATGCTGGACTGCGAAACATCAGAAGAGGACATAGATACTAGTTTGGAGAACAATCAGCtattttctgCTGTTTCTGGACCTGAGGTAACAGACAGCCATGATGAGCATATCATCTCAGAAATCCAAGATGAAAACCCCCAAATTCAGAAAGCCACTCAGTATTATGCTGGTGTGGCCGTAGCAGCAGCCGTTGCTCTCCTTGCCACAGCCACATCTTTACTGTATTTCAGTTAATGACAATGCAAATAGCAAAAATGTTTGGTGTGTATGATCTTAAAtatgatttcaaatataattttcaaattTGAACTATTATAGGGTtatgtaaaatacaatataagGGTTCACATggcttcattttgtttttaaaggaatagttcacccaaaaatgaaaattaccccatgttTTACTCCCCTCGAAGCCTTCCTAGGTGTATATAACTTCCTTCTTTcagtcagtttttaaaaaacatcatcCTGGTAATGCAGGTGGATAGCGGACAATATTTTGAAGCTCCTTAAATCGGATATATCCGGAAGTACTGtgacgtaaaactaacctatacatcctttgaagcagatcaatgggtttatgtgacaaaaatatttcaaatttaaatttctGGTAATAAAAAACTAACAGACTTCTTGGCCGACATCCCGACTCGACGTGCGGAGTAAGCTGTGTCATACGTcgagtcataggtcagccaagaacTTGGAAATAACATGAGTCAATTATTTACgttacaattttacaaatagaaatgtttttctaacaaaaaaaacattgaaaggTGTCCCGAAGGCGTATAGTTTAGTTTTACGTCATagtacttgcagatatatttgatttacggagcttcaaaataatggcagCTATCcaaccaagcttggaagagccatgATACATTTAGTTGGTATgaaagaaagtaagtcatacacCTAGAATGGATTCGGAGTGAGTAAAAcatggggtcattttcattttttggtgagctattcctttaaatgaaatgttctttGAGAAACGCTAAACAAATTGAAGCTGAAATCAGTGGAATAGACAAAGCCGTTTATTCAAAGAGGACATTCTCACATGTTTGgccatcaaaatatatatttcaaacctGATAATTGAGTAGTAATCTACTGGTTACTTAAGTGTGaattacatttgtgtgtttCGATTAGTTTTTTTAGATTGCGTACTAGTGGCACGTTTGCACTCACTCAGCCTGAATGGATCAAAAGGAAAAAGTTAATTATCATCATCCTGTGTGCGTTCTTACAGAATATTTGTGGCTTCCCTCACTATGTTGTCATTGGGCCATTTGTCATGTCATTATCAAACCAGTTTCTTTTGGCTTCTGTAGCAGTGCAGCATTAAAGGTATAAGGGAACGGTTGTATTAAGTTTAACTTAATGGAAAAATGCCTTTGGCATGAAATAGTGCTGCAAGCTATTTTTGTGACGATGGAACGGGTAAATACTCTACTTCCTTCTGAATCATTGATattgattttgattatttttcagaCCTTGGAGCCGTTGTTGATGTATTCTTTACCATTTCTACATTGCAAATtgttcacatttaaatgtgggAACTGAAACATGTAGAGGTACTTTAGAGGTTCTTAGTTAATACTTTTttatctttccttttttttttttttttttgtagttttcccTTTTAAAGACCCCTGTTCTAAGGAACTAGTTTTAACAATGGTGCGCGGATCTAAAACCACCTTCAGATGGGCACTTACACATGAATACTCTCTCATACACAGTAATCCTGGGGTTTGCATATGTTTTAGCCGTGATTTAGTTGGGGACGTGTCAGGGCATGTATTACCTGGAATGTAGCTTGAAACTAGTCATGAAGACATAAAGGAACGAGGAGTGTCTTTGGcctttcttgtgttttattgaagTAAGTCACCCTGATGCAATGTAGCGCAGCATGACTCCATGTGAAATcacattattttgttgtttttttttttattcattaagcaGATAGCGGCTCGATACACAATGGATGACAAGTACAGTGTCACACTGTGAGAGTTTGACTTTCACGTAGCAAGCCTAAGCATGCTTAAATAAGACGGCTACTCTCATTCTCTGCAAATCAGAGTTCCCATATTCACAGAAAACCAGGCAGTTGTATAAGATTTCAGGAAACAAGTCCAACAAGTTATGAACGTGCACTGCTGTTAAAACGTTTGAGGTCAGGATATTTTGAAAGATGTTTCtgttgatccaaaatacagtacaaattaaaattattattataagatcTTTAAGACATCAttgaaatattatgttttactgGTCACAAGATATTATTTCTCAATGTcagttttgaaatatatatatatatatatatatatatatatatagctttacaattaattttgatGAGTTAAATGAATTCTTGATGAATAAAggtattaccttttttttttttttttttttttttttttttttttttttttttttggaaaaacacaaaacaaaaaactactgCCCCACAAACCTGGTGTACATTTCATCTCCATAATAAATCAGCTTTGCAATCCATAA

Function

NR:

description
protein odr-4 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261048.1 True 3848 mRNA 0.40 14 9702238 9709851

Neighbor

gene id symbol gene type direction distance location
prg4a LOC107594674,LOC107722510,LOC107693698,LOC107589871,LOC107677759 coding upstream 20269 9676255 ~ 9681969 (+)
rxrga rxrga,LOC107693746,LOC107677771,LOC107718143,LOC107589872,LOC107722630 coding upstream 29721 9658386 ~ 9672517 (+)
olfml2bb olfml2bb,LOC107693709,LOC107722514,LOC107589916,LOC107677754,LOC107594675 coding upstream 72043 9624718 ~ 9630195 (+)
si:ch73-14h1.2 NA coding upstream 96043 9604188 ~ 9606195 (+)
agla agl,LOC107722579 coding upstream 102002 9578055 ~ 9600236 (+)
pla2g4aa pla2g4aa,LOC107722605,LOC107693742,LOC107718137,LOC107677770,LOC107594671,LOC107589895 coding downstream 21678 9731529 ~ 9745108 (+)
ivns1abpb ivns1abpb,LOC107722586,LOC107693739,LOC107718136,LOC107589867,LOC107677749 coding downstream 48328 9758179 ~ 9766326 (+)
niban1b LOC107722650,LOC107693736,LOC107564706,LOC107718132,LOC107677773,LOC107589866 coding downstream 71914 9781765 ~ 9805690 (+)
prrx1a prrx1a,LOC107693734,LOC107722649,LOC107564708,LOC107589863,LOC107718131,LOC107691682 coding downstream 141434 9851285 ~ 9856761 (+)
mllt1b LOC107722626,LOC107718125,LOC107564713,LOC107691596,LOC107589857 coding downstream 207480 9917331 ~ 9927244 (+)
G10604 NA non-coding upstream 98395 9602366 ~ 9603843 (+)
G10581 LOC107722512,LOC107693701,LOC107594678 non-coding upstream 124832 9577171 ~ 9577406 (+)
G10571 NA non-coding upstream 129445 9486177 ~ 9572793 (+)
G10557 NA non-coding upstream 247493 9454366 ~ 9454745 (+)
G10466 NA non-coding upstream 485574 9215505 ~ 9216664 (+)
G10674 kifap3b,LOC107693735,LOC107564707,LOC107722509,LOC107718166 non-coding downstream 115764 9825615 ~ 9826220 (+)
G10738 NA non-coding downstream 279292 9989143 ~ 10010746 (+)
G10749 NA non-coding downstream 282933 9992784 ~ 9993395 (+)
G10752 NA non-coding downstream 302086 10011937 ~ 10014366 (+)
G10753 NA non-coding downstream 304708 10014559 ~ 10015822 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 530323 9162611 ~ 9171915 (+)
G10212 NA other upstream 1594461 8106865 ~ 8107777 (+)
G10108 NA other upstream 2119853 7504622 ~ 7582385 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other upstream 2402137 7285670 ~ 7300101 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 2596446 7098303 ~ 7105792 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 36719 9746570 ~ 9751212 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other downstream 201777 9911628 ~ 9916861 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other downstream 448681 10158532 ~ 10161809 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 952878 10662729 ~ 10665110 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 1001279 10711130 ~ 10718194 (+)

Expression


Co-expression Network