G1323


Basic Information

Item Value
gene id G1323
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 2159686 ~ 2160082 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU1506
GGCTGTTTAAATGAATTAATGTAAGGTTTCTTTCATACATGCCCCGGTAATATTGAAGCCATTACGGTCCTCTCCGGAGTTGGCATGGTCAGCGCTTAGTGCTTAATGTGTTCCACGTTGAGCTTATTAATCTAAACAGTGTAGCCCAGCTGCTCTGGATCGACCGTTCCCGAGCAGCGGCAGCGGTGGCGGCAGCCTCGCATCTGAACTGCTGCCATATGTGGCCGGGCCTGTGGAAAAGCTAACTGGCTTGTGTCATTTTCTACACTTAATTCTGACCACTCCTGGTGAGTAGGTTTTCACAGAGGCCTTCATTGAGACCACTTCCAACTGTAAAGCCACACATTTGGATAGGCCGTGCCTCCATGAGTTCTTGCCAACAAAAATAAACCACAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU1506 True 397 lncRNA 0.32 1 2159686 2160082

Neighbor

gene id symbol gene type direction distance location
CI01000000_02092375_02096188 POLR2B.L, RPB2, POLR2B coding upstream 63498 2092293 ~ 2096188 (+)
CI01000000_02080057_02086228 REST coding upstream 72176 2079831 ~ 2087510 (+)
CI01000000_02018856_02033091 EXOSC3 coding upstream 125307 2018597 ~ 2034379 (+)
CI01000000_01996254_01997531 GPR151 coding upstream 162069 1996074 ~ 1997617 (+)
CI01000000_01978179_01992602 PPP2R2BB, PPP2R2B, PPP2R2B.L coding upstream 166725 1978179 ~ 1992961 (+)
CI01000000_02237986_02243555 NA coding downstream 77612 2237694 ~ 2243820 (+)
CI01000000_02334112_02352906 NA coding downstream 173473 2333555 ~ 2353369 (+)
CI01000000_02496792_02498535 NA coding downstream 336662 2496744 ~ 2498594 (+)
CI01000000_02516813_02517287 NA coding downstream 356731 2516813 ~ 2517787 (+)
CI01000000_02534790_02541012 NA coding downstream 374708 2534790 ~ 2541023 (+)
G721 NA non-coding upstream 118954 2040364 ~ 2040732 (+)
G719 NA non-coding upstream 120594 2038857 ~ 2039092 (+)
G718 NA non-coding upstream 120970 2038477 ~ 2038716 (+)
G717 NA non-coding upstream 121428 2038033 ~ 2038258 (+)
G710 NA non-coding upstream 135715 2023761 ~ 2023971 (+)
G1324 NA non-coding downstream 4565 2164647 ~ 2165127 (+)
G1345 NA non-coding downstream 20356 2180438 ~ 2180896 (+)
G1346 NA non-coding downstream 20904 2180986 ~ 2181410 (+)
G1357 NA non-coding downstream 32400 2192482 ~ 2193168 (+)
G1372 NA non-coding downstream 46681 2206763 ~ 2207102 (+)
G579 NA other upstream 250878 1767917 ~ 1908808 (+)
G435 NA other upstream 726832 1425121 ~ 1432854 (+)
G350 NA other upstream 1482749 671842 ~ 676937 (+)
G252 NA other upstream 1652614 503209 ~ 507072 (+)
G2774 NA other downstream 2293696 4453778 ~ 4454232 (+)
G2850 NA other downstream 2565904 4725986 ~ 4726482 (+)
G6811 NA other downstream 8044749 10204831 ~ 10321679 (+)
G6820 NA other downstream 8267141 10427223 ~ 10433018 (+)
G7018 NA other downstream 8818407 10978489 ~ 10980872 (+)

Expression


Co-expression Network