stard3nl (stard3nl,LOC107686094,LOC107713985,LOC107664037,LOC107751580)


Basic Information

Item Value
gene id stard3nl
gene name stard3nl,LOC107686094,LOC107713985,LOC107664037,LOC107751580
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14855829 ~ 14863508 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261298.1
CGCGTTTCCTGTATGATTGAAACGAAAGTCATCAGATGGTGCGGAATTTTTAGCGACAGGTAGATCCTCACTGCCCTGTCAGTTGTTTTATAATACAAGGCGTGCTTTTATAGGACTTCCCAGCAAGAACTAGGCATGACCGCCGAGTCTGACTTTCCAGAAGAGTGAGTGTGAATGGAGCGGACGAGTCATGGACAGCCAGTGCAGCGGCAGTGTGGGTTCACGGGCCACTACAGGGGCTGTGGTCAACATTAACTCAACGCCCATTTCTGCTCGTATCGAGTCCTATGAAGGGGGAGAACAGAAGTGCATCTCTGATGTCCGAAGAACCTTCTGCTTGtttgtgacctttgaccttttgtTCATCACCTTGCTGTGGATCATTGAGCTCAATGTCAATGGAGGTATAAAGGAGCACCTCAAAAAAGAGGTGTTGGAGTATGATTACCACGAATcgttttttgacatttttCTCTTGGCTGTGTTCCGCTTCACGGCTTTGATTCTGGCCTATGCGGTTTGTAAGCTGCGCCACTGGTGGGCCATTGCGATAACTACAGCAATCACAACTGGTTTCTTAATAGTCAAAGTAGTTTTATCAAAGCTTCTTTCACAGGGAGCTTTTGGGTATTTGTTACCCATTATCTCCTTTATTCTGGCGTGGATAGAGACGTGGCTGCTGGACTTCAAAGTCCTGCCCCAGGAGGCCGGGGATGAAATCAGGTATCTTTCCGTGCAGAATGCGCTGGATCGAGAACCTCTTTTACACCCGGGACCCGCTCCAGACGGCCAGTTCTACTCTCCTCCTGAGTCCATGGCAGACTCCGATGAAGACCTTGATGATAAACATGATCTTGAGAAGCCCATCATCTAGCAGGAACTCCAGATTAAACTGATTCGACTCTTCCAGCTCCGCTCGACCTCGGGCCACATGTCTTAACATGGGTTTTTGTAGACGGGTGACCAGAACCAGAGTCACCCTGCCTTAAATCCACCATCGCCGTGCTCAGCATTATGTTTATTTGTCTCTCAATGCCCACTCAAGCTCTTAGTGCAATCGATTTTTTtgtgtcttaaaaaaaatagtttatgtactgaaactgaaaaatgaaggattttaatgtgtattttgatCATCAAATGATATCAGTGTTGAACGCCACATTTATGATCTTCAGATGCTTCCATGTAACAAAACGACTGCCGTCTCACGTTAAGCTATAATCTCCATATGTGTATTAACACTGTTATGCCTCTGATCTCACGTACAGCACCGGAGTTGACCTAAATGTGAAAAGCAGTATAGTCTCAGGTCTGCACTGCCACTCATCTGTGTGcgaaaatgtcatgttttttctttccgtcgtcttttttttaatgctttttctaCCAATCTGAACGGAGAGAGATGATAGGTTAGGCTTGATGTACTTGCAAATTAAAGGACTCGACTAGTTTTGCATGAAACGCACTTAAATGACCACGGCTCGTAACGACGCATGGACgtgtaatatgttttttaaagtttgtttcgGTTCCTCTTCAGTTAGCATTCTTAAACCATCGtaattaagtgaaataaatcGGCTTTCTGTTGAGTTTGCTTTTGCCGCGCTTACTGAATAAGGGCTTACGTATCTGGTGCAGGTCCGGGACCAGAATCATTTCTGCAACTATGGCAAAGCCTCGAGTGCGCAGGATGATGGCAGATTGTAATTCTTCTTTCGGCGTGCATTAAAACGATTGGTGTTTTTATGTAA

Function

symbol description
stard3nl Predicted to be located in late endosome membrane. Predicted to be integral component of membrane. Orthologous to human STARD3NL (STARD3 N-terminal like).

NR:

description
MLN64 N-terminal domain homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261298.1 True 1760 mRNA 0.45 9 14855829 14863508

Neighbor

gene id symbol gene type direction distance location
epdr1 epdr1,LOC107664036,LOC107558964,LOC108267170,LOC107713986 coding upstream 658 14852700 ~ 14855171 (+)
ranbp9 ranbp9,LOC107713984,LOC107556766,LOC107664064,LOC107686062,LOC107751564 coding upstream 6400 14838422 ~ 14849429 (+)
rnf182 rnf182,LOC107686061,LOC107586260,LOC107751563,LOC107713969,LOC107579226 coding upstream 18877 14836159 ~ 14836952 (+)
si:ch211-106h4.12 NA coding upstream 80333 14773824 ~ 14775496 (+)
si:ch211-106h4.4 malrd1,LOC107713964,LOC107686070 coding upstream 109871 14726160 ~ 14745958 (+)
otulinb LOC107713989,LOC107657417,LOC107718039,LOC107701026,LOC107556827 coding downstream 47367 14910875 ~ 14915309 (+)
ankhb ankhb,ankh,LOC107657429,LOC107713990,LOC107701025,LOC107718038,LOC108437249 coding downstream 54713 14918221 ~ 14932680 (+)
mycb mycb,LOC107584016,LOC107657430,LOC107713991 coding downstream 72214 14935722 ~ 14937958 (+)
klhl18 klhl18,LOC107657445,LOC107733883,LOC107701005,LOC107730797 coding downstream 351361 15214869 ~ 15222679 (+)
zgc:136930 zgc:136930,LOC107599883,LOC107733879,LOC107657418,LOC107559002 coding downstream 366498 15230006 ~ 15235251 (+)
G12136 NA non-coding upstream 26343 14827051 ~ 14829486 (+)
G12135 fam134b,LOC107686060,LOC107664066,LOC107584095,LOC107751562,LOC107558208,LOC107713983 non-coding upstream 28884 14823161 ~ 14826945 (+)
G11918 LOC107664027,LOC107713977,LOC107584165,LOC107556660 non-coding upstream 218024 14637589 ~ 14637805 (+)
G11917 NA non-coding upstream 219060 14636444 ~ 14636769 (+)
G11914 NA non-coding upstream 252284 14559860 ~ 14603545 (+)
G12144 NA non-coding downstream 2690 14866198 ~ 14878772 (+)
LOC122323195 NA non-coding downstream 75681 14939189 ~ 14982818 (+)
LOC122328201 NA non-coding downstream 161895 15025403 ~ 15026789 (+)
G12211 NA non-coding downstream 171421 15034929 ~ 15037006 (+)
G12255 NA non-coding downstream 254949 15118457 ~ 15180254 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other upstream 72852 14776322 ~ 14782977 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other upstream 102668 14746107 ~ 14753161 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other upstream 676214 14175364 ~ 14179615 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 1981821 12867929 ~ 12874008 (+)
LOC122358236 NA other upstream 2229442 12623823 ~ 12626387 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other downstream 378289 15241797 ~ 15249249 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 996671 15860179 ~ 15875764 (+)
G12531 LOC107722077,LOC107568983 other downstream 1403535 16267043 ~ 16268797 (+)
LOC122323293 NA other downstream 1586624 16450132 ~ 16456532 (+)
LOC122361622 NA other downstream 1861106 16724614 ~ 16776351 (+)

Expression


Co-expression Network