ranbp9 (ranbp9,LOC107713984,LOC107556766,LOC107664064,LOC107686062,LOC107751564)


Basic Information

Item Value
gene id ranbp9
gene name ranbp9,LOC107713984,LOC107556766,LOC107664064,LOC107686062,LOC107751564
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14838422 ~ 14849429 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261352.1
GCCAATCAGATTGCTGGATTTCAcactaacaacaaacaaaagatcGGGGTTCCCTCTGCTGCTGTCTTTCTGCTCCTTTTACCCTATTTAGTCTGTCCGATCGGTTGGATGTCGTCTTAAATAACAAGGATCAACTTTCTGGATGTCCGTTATGTTTTTGTAAGCTGCCGTTTCGCTGTATTGGCGTGATTAATTCTCTCTAGCGTCTTGCTAACTCTACCAGAGAGGCTGTTTGCGGGCTAATCGCAGTTAGCTGGCTGGCTAGCCGTCCGATCCGAATAAAGCAAGCCCGAAATCTCAGCAGCTCTTCTCCTGTGGTGTCTGACAGTGGTCGCTTCAGCCACTGGACACTGTTAGAAAGCTGTCCAGCTAAATATAGCTGGCAAGCTGTTGGTATCGGCGGCAGGAATCGGATCGCGATGTCAGGACCGTCATCGGGCTGTGGGTTTCTGATGTCGGTTGTCGTTCACGGAGACTTGGCTCTCAACGAGCAGGAAAAAGAGCTCAACCAGCGGCTTAGACGCCTTTACCCGGCCGTCAACGAGCAGGAGACCCCGCTCCCCAGATCCTGGAGCCCCAAAGACAAATTCAGCTACATCGGCCTGTCTCAAAACAACCTCCGGGTGCATTATAAAGGTCATGGAAAGACTCCAAAAGATGCGGCGTCTGTCCGTGCAACACACCCTATTCCAGCTGCCTGCGGGGTCTATTACTTTGAGGTGAAAATAATCAGTAAAGGACGAGATGGCTACATGGGGATTGGCCTGTCCGCTCAAGGTGTCAACATGAACAGACTTCCagGTTGGGACAAGCACTCCTATGGATATCATGGAGACGATGGACACTCCTTCTGCTCATCTGGCACTGGCCAGCCCTATGGTCCAACATTCACAACAGGCGATGTGATCGGCTGCTGTGTGAACCTCATCAACAATACCTGTTTCTACACAAAAAATGGTCACAGTCTAGggATAGCTTTTACAGATTTACCGCCCAACCTGTATCCCACAGTGGGTCTGCAGACCCCAGGGGAGGTCGTGGACGCCAATTTTGGGCAGCATCCGTTCGTGTTTGATATTGAGGATTACATGCGTGAATGGAGAACCAAGATCCAAGCCCAGATTGACCGTTTCCCCATCggggagagagaaggagaatgGCAGGCCATGATTCAGAAAATGGTGGCCTCCTATCTGGTTCACCACAGCTACTGTGCCACCGCTGAGGCCTTTGCCAAATCAACTGACCAGGCCGTACACGAGGAACTTGCTTCTATCAAAAATAGACAGAAGATCCAGAAGCTGGTCTTATCTGGCAGAATGGGAGAGGCTATAGAGACCACTCAACAGCTTTACCCAAGCCTGTTAGAGAGAAACCCAGACCTCCTGTTTATGTTGAAaGTCAGGCAGTTCATTGAGATGGTGAACGGCACTGACAGTGAGGTCAGGTGTCTCGGTGGGAGGAGCCCTAAGTCACAGGATAGCTACCCAGGCTCCCCCCGTCTCTTCAACAGCCCTGTTCACAAAGCCAGCAGCTCCCAGACCTACCAGACAGGTTTTGATAGTAATTACTGTAATGGAGTTTCATCAAGTAAAGGCCACACCTCGGCCCATAGTCACAAGTCATGTCCGCCTACCATGCCAAGCCCTGAGCTTGGCGTCCTGAACGGCACTCGGAGCCAGCAGACCAGCGTTAGtgcTGAGGTGGAGATGGAGGTGGATCACTTCTCAAACGGAGTGTCTGAATCCTCTTCAAATGGATTTCTGAATGGCAGCTCTACTCACGGGATAGACTTGGAGGAATGCGATGGAGATATGGAGGTGGATAGTGCTCAGACTAAGAGGCAGTTGTGTGGAGGGAGCCAGGCAGCCATTGAGAGGATGATTCAGTTCGGCCGAGAGCTACAGAGCATGAGTGAACACTTGCGTCGTGAGAGGGGCAAAAACTCAGCCAATAAGAAGATGCTCAAGGATGCATTCAGTTTGCTGGCATATTCAGATCCATGGAATAGCCCTGTGGGCTACCAGCTAGACTCCATCCAGAGAGAGCCTGTCTGCTCAACACTCAACAGTGCAATATTAGAAACTCATAACCTGCCAAAGCAGCCTCCCTTGGCGCTCGCCGTTGGCCAGGCAGCTCAGTGTCTGTCCCTCATGGCTCGCACAGGCAGCGGATCCTGCGCCTTCGCATCAGTGGATGACTACCTGCACTAACCCCGGgagaattattcctttaaacgACCACGTGAAAGAGGCCCACATCATCCCAGTCCATCCCAgactcccaaaaaaaaaaaaaaaaaaaaaaaaacgaaaaaaaaaaaaaaactggggcCAGCTTTGAAACCACGGCCTGATGAACTGAGCCTCCACATGGCCAGACCCATCCTGGCTCTCTGACAAGACTGGATCCTCTTCACCCGGGCCTAAACCGGGCCTAAAGACACATTAGGAAGAGGGCTTCTAAAAAGTCAGACAAAATCCCCAATCATTAtggtctttattttttatttttattttttttccctttgtcttttttattttgggggagGGGAGGAGGTGTTGGGCGGGGGTGCGGCAGGCTCTGATTGTTTGTTTCCTAATTTACAAGGCATGAGGAAATTATTATGacataattaatgttattatcaGTAAACTTGCATATAAGATATATTTGTTCTTGGTTGAAAGCTGGCAGAGTGAGCGAGACCGAATAACTATGGTCCCACCGCGGCAACACCCTGCTATTTTCAGGTCTCAGCTTGTGTactttaccatttaaaaaagaaaaaaaaaaaaatattgaaattatattaacaCGAGGAGTGGAACATTTAGTTatcttacagtaaaaaaaaaacaaaacttaaaaccCAGAAGACCTAACACTGCTGGAGTCATCCTTAGTGGTGGTATTTAGTATAGAGCGTTAGTGTGAGCTGTATGAGTTATGCCCTTTTTTTTGTGCAAGCGCACCCTCCCTCTGCCAACTGCACAGCAGGATTGATGCAATGTTCGGACACTTTGATTTGTAATTGTATTGATGTATGGTCTTTTCATCCACCCCCATCTCTTACTCCATCTTTTAAAAAGTCCATATTCAGGCATTCTCTCATCATCGTTGCCTGcactgtgtttttgtgcagtttGGATGTGCGACAGGAACATGGTGAAATTAAGGTCATATCCAGTCCCGGAGACGCAAGCCTTCTCCATTGTTTTTTCTCCTCTTGTTTACCAGTCAATCCCTCGGATCATCAGTACTTTTAAAACAAGGAGAATGGTACAGTATTGTCATCGACACTGTCTTATCATTTTCAGTAATAAAACGTAAATACCCAGTTGAA

Function

symbol description
ranbp9 Acts upstream of or within retina development in camera-type eye. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in adaxial cell; brain; olfactory placode; retina; and somite. Orthologous to human RANBP9 (RAN binding protein 9).

NR:

description
ran-binding protein 9

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K23334 RANBP9_10, RANBPM; Ran-binding protein 9/10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261352.1 True 3346 mRNA 0.48 14 14838422 14849429

Neighbor

gene id symbol gene type direction distance location
rnf182 rnf182,LOC107686061,LOC107586260,LOC107751563,LOC107713969,LOC107579226 coding upstream 1470 14836159 ~ 14836952 (+)
si:ch211-106h4.12 NA coding upstream 62926 14773824 ~ 14775496 (+)
si:ch211-106h4.4 malrd1,LOC107713964,LOC107686070 coding upstream 92464 14726160 ~ 14745958 (+)
cacnb2b LOC107664070,LOC107751551,LOC107686054 coding upstream 129223 14682890 ~ 14709199 (+)
tmem236 tmem236,si:dkey-32m20.1,LOC107713979,LOC107686088,LOC107751554,LOC107664072 coding upstream 157090 14678449 ~ 14681332 (+)
epdr1 epdr1,LOC107664036,LOC107558964,LOC108267170,LOC107713986 coding downstream 3271 14852700 ~ 14855171 (+)
stard3nl stard3nl,LOC107686094,LOC107713985,LOC107664037,LOC107751580 coding downstream 6400 14855829 ~ 14863508 (+)
otulinb LOC107713989,LOC107657417,LOC107718039,LOC107701026,LOC107556827 coding downstream 61446 14910875 ~ 14915309 (+)
ankhb ankhb,ankh,LOC107657429,LOC107713990,LOC107701025,LOC107718038,LOC108437249 coding downstream 68792 14918221 ~ 14932680 (+)
mycb mycb,LOC107584016,LOC107657430,LOC107713991 coding downstream 86293 14935722 ~ 14937958 (+)
G12136 NA non-coding upstream 8936 14827051 ~ 14829486 (+)
G12135 fam134b,LOC107686060,LOC107664066,LOC107584095,LOC107751562,LOC107558208,LOC107713983 non-coding upstream 11477 14823161 ~ 14826945 (+)
G11918 LOC107664027,LOC107713977,LOC107584165,LOC107556660 non-coding upstream 200617 14637589 ~ 14637805 (+)
G11917 NA non-coding upstream 201653 14636444 ~ 14636769 (+)
G11914 NA non-coding upstream 234877 14559860 ~ 14603545 (+)
G12143 NA non-coding downstream 7943 14857372 ~ 14886069 (+)
G12144 NA non-coding downstream 16769 14866198 ~ 14878772 (+)
LOC122323195 NA non-coding downstream 89760 14939189 ~ 14982818 (+)
LOC122328201 NA non-coding downstream 175974 15025403 ~ 15026789 (+)
G12211 NA non-coding downstream 185500 15034929 ~ 15037006 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other upstream 55445 14776322 ~ 14782977 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other upstream 85261 14746107 ~ 14753161 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other upstream 658807 14175364 ~ 14179615 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 1964414 12867929 ~ 12874008 (+)
LOC122358236 NA other upstream 2212035 12623823 ~ 12626387 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other downstream 392368 15241797 ~ 15249249 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 1010750 15860179 ~ 15875764 (+)
G12531 LOC107722077,LOC107568983 other downstream 1417614 16267043 ~ 16268797 (+)
LOC122323293 NA other downstream 1600703 16450132 ~ 16456532 (+)
LOC122361622 NA other downstream 1875185 16724614 ~ 16776351 (+)

Expression


Co-expression Network