hectd3 (hectd3,LOC107688506,LOC107674075)


Basic Information

Item Value
gene id hectd3
gene name hectd3,LOC107688506,LOC107674075
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12270887 ~ 12278067 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262124.1
AACACACATGGGCGGATCGCCCTTTAGACCGGTGGAGGTACATAGCTGTCTTGACAGATGCCAGTATCTGTGAGAAAGCTCCGGCGGGAGTAATAATGCTCAGCTGTGTCTAGAGTTTTGTCGTACGGTTAATTTATTACACGGGGTCTCGGTAAAAGCGGACGAACCGGGAAAGAAAGGGAAAGCATATGTGAGGTAATGCTCGCTGACGGCCGAACCGCTCAGTGTTGGTGTTGACACATTCCCAGCTAGCACTCGGCTAGCGCACTCAAACTTGGAGATGTCTCCGGACGACAACCCGCACACCCTCCTGGGAAGGATACGGTTTTTAAACAAGTGCATTGAATGCTTCCGAAAAAGCGAGCCGCTGCCGGAGTCCCTGTGTTACGTGCCGAAAGAGGTTTGCTACAAAATCTGCAAGGACTCGTCGTCTGGCTCCGCTTCCGCGTCCTCGTCCACAGCTGGCAACTCGGGAGGCAAGAGTGTGGTGTCGGTGTGGGAAAACCCACATCAGGCTCCTCACAAGAAATCGTGCAAGTGTAACATCGAGCCCAAAAAAGGCACATGTATACGGACAACAGGGGAAGAGTACTGCAACAGCCATGGCCTGTGGGTCAAAATAAGCAAGGAGCAGCTGGAGGAGTATCGTGCCGGCCTGGACATCGAGGAgggctggatcctggtgtgtaAACACACAGAAGGTGGAGACAGGCTTGTGCCAGTGGAATCTCCCGACACTGTCAGCCGCCAGCAGCAGCTGTTTGGATACGACCATAAGCCGTGTAATAGGTGGGAGCAGGTGGTGGATGTGGAAAACTCCTTGCACATGGGTGCCAAACCCAAGGTGGCGGAGCCGGACGAGGTCGCTGTGCGCAAACTGAGGTATGTTCCTCCTACGTGGACGTTTGAATGTGACGAGGACCTAGTACACTACTTCTATGACCACATTGGGAAAGAAGATGAAAACCTTGGTAGCGTGAAGCAATGCGTGACCAGCATCGATGTGTCTTCTAGTTCGGAGGACCCCAGTGGTGGTGCAAGCTGCCTGACAGATGGAGACACTGAGACTTACTGGGAGAGCGATGGCATGCAGGGACAGCACTGGATCCGACTGCACATGAAGAGAGGCACTGTGGTCAAcaaactgATATTAACAGTGGACTCAACAGATGATAACTACATGCCCAAAAGAGTGACTGTTTATGGTGGAGAGGTTGATAATCTCAAGAAATACAGCGATGTAACAATAGATGACAACTTAATTGGAGAGGTTTGTGTTCTGGAGGACATGACTTCACATTTGCCTGTCATAGAGATCAGGATTGAGGAATGCAGAGATGAGGGAATCGATGTACGGATCAGGGGTCTGAAGATCAAATCGTCCTGCGAGCGTGACTTGGGCCTGAATGCAGACGTATTCCAGTCTCCCAACTTAGTGCGCTACCCGAGATTGGAGGGCACATCCCCTGATGTCCTCTATCGCCGCGCACTGGTCATTCAGAGGTTCATCACACTCCTGGACAGTCTGTTGCCTCATATGGTGCCTGCATGGGACTACAGCCTTGGAACATTCAACCAGATCAAAAGCATAAAGCAGTTCCTGCTATTGTCCAAGCGTCGCTCTGCCCTCATCACCCAGTGCCTGAAGGACTCTGAGACCAGTAAGCCTAACTTCATGCCCCGCCTTTACATCAACCGTCGCCTTGCCATGGAGCACCGTGACAATCCTACTCTGGACTCCACGTGTAAAAATGCTGTCTTCACTCAGGTGTATGAGGGTCTGAAGCCATCTGACAAGTATGAAAAGACTCTGGACTACAGGTGGCCAGCGCGATATGACCAGTGGTGGGAGTGTAAATTCATTGCAGAAGGCATCATTGATCAAGGGGGTGGTTTTCGAGACAGCCTGGCGGACATGTCTGAAGAGCTTTGTCCGAGCTCATCAGAGTGCCCCATGCCACTTCCATTCTTCACACGAACTTCTAACCAGGGGGCTGGAGAGGCCAGAGACTTCTATGTGCCAAATCCTTCATGTCGAGAATTCCACAAGTTTGAGTGGATTGGGCAACTAATGGGTGCAGCTCTTCGCGGAAAAGACTTTTTGGTTCTGGCTTTACCAGGGCTGGTGTGGAAGCAGCTGATTGGAGAATCTGTCAGCTGGACTAAAGACTTTCCTGCAGTTGATTCAGTGCTGGTGAAGTTGTTGGAGGCTATGGAGCATATGGACAAGGAGACATTTGATTTTAAGTTCGGCCAGGAGCTTGTATACACCACACCCCTGAGTGACGGACGGCTGGTGGAGCTGATCCCAGGAGGCAGTGGAGTGGTGGTTCGATATGAAGATCGCATGGAGTTCATACGCCTGGTACAGAAGTCCAGACTCGAAGAGAGCAGGGAACAGATTGCTGCCATGCAGGCAGGACTGGTGAAAGTGGTGCCGCAAGCTGTGCTTGATCTCCTGACATGGCAGGAAGTGGAGAAGAAAGTGTGTGGAGACCCAGAGATCACAGTAGAGGCCCTTAAACGCCTCACACGCTATGAAGACTTAGAACAAACGGATGTCAGAGTGCAGTACTTATGGGAAGCCCTAATGAACTTCACCAATGAGGATCGCAGCAGGTTTTTGAGATTTGTGACTGGAAGAAGTCGTCTTCCTGCTCCGATTTATATCTTCCCGGACAAACAAGGATCTGAAACCACAGATGCACTTCCTCAATCTTCCACATGTTCCAGCACCCTTTATCTACCAAAATACCCAAGTGCTAAAGTTTGTGAAGAGAAGCTTCGCTATGCTGCATATAATTGTGTGGCCATCGATACAGACATGAGCCCTTGGGAGGAGTGACATGATTTTGCCATGTTTACGAATTTTACACACCaggatttttggcataaatgtACTGTAGCCTTCAGCAACGTGCACATGACCATGCCTACACTATTGCCAATTAcatctgtacagtataaataaatatgttataaacAATA
>XM_043262125.1
AAACACACATGGGCGGATCGCCCTTTAGACCGGTGGAGGTACATAGCTGTCTTGACAGATGCCAGTATCTGTGAGAAAGCTCCGGCGGGAGTAATAATGCTCAGCTGTGTCTAGAGTTTTGTCGTACGGTTAATTTATTACACGGGGTCTCGGTAAAAGCGGACGAACCGGGAAAGAAAGGGAAAGCATATGTGAGGTAATGCTCGCTGACGGCCGAACCGCTCAGTGTTGGTGTTGACACATTCCCAGCTAGCACTCGGCTAGCGCACTCAAACTTGGAGATGTCTCCGGACGACAACCCGCACACCCTCCTGGGAAGGATACGGTTTTTAAACAAGTGCATTGAATGCTTCCGAAAAAGCGAGCCGCTGCCGGAGTCCCTGTGTTACGTGCCGAAAGAGGTTTGCTACAAAATCTGCAAGGACTCGTCGTCTGGCTCCGCTTCCGCGTCCTCGTCCACAGCTGGCAACTCGGGAGGCAAGAGTGTGGTGTCGGTGTGGGAAAACCCACATCAGGCTCCTCACAAGAAATCGTGCAAGTGTAACATCGAGCCCAAAAAAGGCACATGTATACGGACAACAGGGGAAGAGTACTGCAACAGCCATGGCCTGTGGGTCAAAATAAGCAAGGAGCAGCTGGAGGAGTATCGTGCCGGCCTGGACATCGAGGAgggctggatcctggtgtgtaAACACACAGAAGGTGGAGACAGGCTTGTGCCAGTGGAATCTCCCGACACTGTCAGCCGCCAGCAGCAGCTGTTTGGATACGACCATAAGCCGTGTAATAGGTGGGAGCAGGTGGTGGATGTGGAAAACTCCTTGCACATGGGTGCCAAACCCAAGGTGGCGGAGCCGGACGAGGTCGCTGTGCGCAAACTGAGGTATGTTCCTCCTACGTGGACGTTTGAATGTGACGAGGACCTAGTACACTACTTCTATGACCACATTGGGAAAGAAGATGAAAACCTTGGTAGCGTGAAGCAATGCGTGACCAGCATCGATGTGTCTTCTAGTTCGGACCCCAGTGGTGGTGCAAGCTGCCTGACAGATGGAGACACTGAGACTTACTGGGAGAGCGATGGCATGCAGGGACAGCACTGGATCCGACTGCACATGAAGAGAGGCACTGTGGTCAAcaaactgATATTAACAGTGGACTCAACAGATGATAACTACATGCCCAAAAGAGTGACTGTTTATGGTGGAGAGGTTGATAATCTCAAGAAATACAGCGATGTAACAATAGATGACAACTTAATTGGAGAGGTTTGTGTTCTGGAGGACATGACTTCACATTTGCCTGTCATAGAGATCAGGATTGAGGAATGCAGAGATGAGGGAATCGATGTACGGATCAGGGGTCTGAAGATCAAATCGTCCTGCGAGCGTGACTTGGGCCTGAATGCAGACGTATTCCAGTCTCCCAACTTAGTGCGCTACCCGAGATTGGAGGGCACATCCCCTGATGTCCTCTATCGCCGCGCACTGGTCATTCAGAGGTTCATCACACTCCTGGACAGTCTGTTGCCTCATATGGTGCCTGCATGGGACTACAGCCTTGGAACATTCAACCAGATCAAAAGCATAAAGCAGTTCCTGCTATTGTCCAAGCGTCGCTCTGCCCTCATCACCCAGTGCCTGAAGGACTCTGAGACCAGTAAGCCTAACTTCATGCCCCGCCTTTACATCAACCGTCGCCTTGCCATGGAGCACCGTGACAATCCTACTCTGGACTCCACGTGTAAAAATGCTGTCTTCACTCAGGTGTATGAGGGTCTGAAGCCATCTGACAAGTATGAAAAGACTCTGGACTACAGGTGGCCAGCGCGATATGACCAGTGGTGGGAGTGTAAATTCATTGCAGAAGGCATCATTGATCAAGGGGGTGGTTTTCGAGACAGCCTGGCGGACATGTCTGAAGAGCTTTGTCCGAGCTCATCAGAGTGCCCCATGCCACTTCCATTCTTCACACGAACTTCTAACCAGGGGGCTGGAGAGGCCAGAGACTTCTATGTGCCAAATCCTTCATGTCGAGAATTCCACAAGTTTGAGTGGATTGGGCAACTAATGGGTGCAGCTCTTCGCGGAAAAGACTTTTTGGTTCTGGCTTTACCAGGGCTGGTGTGGAAGCAGCTGATTGGAGAATCTGTCAGCTGGACTAAAGACTTTCCTGCAGTTGATTCAGTGCTGGTGAAGTTGTTGGAGGCTATGGAGCATATGGACAAGGAGACATTTGATTTTAAGTTCGGCCAGGAGCTTGTATACACCACACCCCTGAGTGACGGACGGCTGGTGGAGCTGATCCCAGGAGGCAGTGGAGTGGTGGTTCGATATGAAGATCGCATGGAGTTCATACGCCTGGTACAGAAGTCCAGACTCGAAGAGAGCAGGGAACAGATTGCTGCCATGCAGGCAGGACTGGTGAAAGTGGTGCCGCAAGCTGTGCTTGATCTCCTGACATGGCAGGAAGTGGAGAAGAAAGTGTGTGGAGACCCAGAGATCACAGTAGAGGCCCTTAAACGCCTCACACGCTATGAAGACTTAGAACAAACGGATGTCAGAGTGCAGTACTTATGGGAAGCCCTAATGAACTTCACCAATGAGGATCGCAGCAGGTTTTTGAGATTTGTGACTGGAAGAAGTCGTCTTCCTGCTCCGATTTATATCTTCCCGGACAAACAAGGATCTGAAACCACAGATGCACTTCCTCAATCTTCCACATGTTCCAGCACCCTTTATCTACCAAAATACCCAAGTGCTAAAGTTTGTGAAGAGAAGCTTCGCTATGCTGCATATAATTGTGTGGCCATCGATACAGACATGAGCCCTTGGGAGGAGTGACATGATTTTGCCATGTTTACGAATTTTACACACCaggatttttggcataaatgtACTGTAGCCTTCAGCAACGTGCACATGACCATGCCTACACTATTGCCAATTAcatctgtacagtataaataaatatgttataaacAATA
>XM_043262126.1
AAACACACATGGGCGGATCGCCCTTTAGACCGGTGGAGGTACATAGCTGTCTTGACAGATGCCAGTATCTGTGAGAAAGCTCCGGCGGGAGTAATAATGCTCAGCTGTGTCTAGAGTTTTGTCGTACGGTTAATTTATTACACGGGGTCTCGGTAAAAGCGGACGAACCGGGAAAGAAAGGGAAAGCATATGTGAGGTAATGCTCGCTGACGGCCGAACCGCTCAGTGTTGGTGTTGACACATTCCCAGCTAGCACTCGGCTAGCGCACTCAAACTTGGAGATGTCTCCGGACGACAACCCGCACACCCTCCTGGGAAGGATACGGTTTTTAAACAAGTGCATTGAATGCTTCCGAAAAAGCGAGCCGCTGCCGGAGTCCCTGTGTTACGTGCCGAAAGAGGTTTGCTACAAAATCTGCAAGGACTCGTCGTCTGGCTCCGCTTCCGCGTCCTCGTCCACAGCTGGCAACTCGGGAGGCAAGAGTGTGGTGTCGGTGTGGGAAAACCCACATCAGGCTCCTCACAAGAAATCGTGCAAGTGTAACATCGAGCCCAAAAAAGGCACATGTATACGGACAACAGGGGAAGAGTACTGCAACAGCCATGGCCTGTGGGTCAAAATAAGCAAGCTGGAGGAGTATCGTGCCGGCCTGGACATCGAGGAgggctggatcctggtgtgtaAACACACAGAAGGTGGAGACAGGCTTGTGCCAGTGGAATCTCCCGACACTGTCAGCCGCCAGCAGCAGCTGTTTGGATACGACCATAAGCCGTGTAATAGGTGGGAGCAGGTGGTGGATGTGGAAAACTCCTTGCACATGGGTGCCAAACCCAAGGTGGCGGAGCCGGACGAGGTCGCTGTGCGCAAACTGAGGTATGTTCCTCCTACGTGGACGTTTGAATGTGACGAGGACCTAGTACACTACTTCTATGACCACATTGGGAAAGAAGATGAAAACCTTGGTAGCGTGAAGCAATGCGTGACCAGCATCGATGTGTCTTCTAGTTCGGAGGACCCCAGTGGTGGTGCAAGCTGCCTGACAGATGGAGACACTGAGACTTACTGGGAGAGCGATGGCATGCAGGGACAGCACTGGATCCGACTGCACATGAAGAGAGGCACTGTGGTCAAcaaactgATATTAACAGTGGACTCAACAGATGATAACTACATGCCCAAAAGAGTGACTGTTTATGGTGGAGAGGTTGATAATCTCAAGAAATACAGCGATGTAACAATAGATGACAACTTAATTGGAGAGGTTTGTGTTCTGGAGGACATGACTTCACATTTGCCTGTCATAGAGATCAGGATTGAGGAATGCAGAGATGAGGGAATCGATGTACGGATCAGGGGTCTGAAGATCAAATCGTCCTGCGAGCGTGACTTGGGCCTGAATGCAGACGTATTCCAGTCTCCCAACTTAGTGCGCTACCCGAGATTGGAGGGCACATCCCCTGATGTCCTCTATCGCCGCGCACTGGTCATTCAGAGGTTCATCACACTCCTGGACAGTCTGTTGCCTCATATGGTGCCTGCATGGGACTACAGCCTTGGAACATTCAACCAGATCAAAAGCATAAAGCAGTTCCTGCTATTGTCCAAGCGTCGCTCTGCCCTCATCACCCAGTGCCTGAAGGACTCTGAGACCAGTAAGCCTAACTTCATGCCCCGCCTTTACATCAACCGTCGCCTTGCCATGGAGCACCGTGACAATCCTACTCTGGACTCCACGTGTAAAAATGCTGTCTTCACTCAGGTGTATGAGGGTCTGAAGCCATCTGACAAGTATGAAAAGACTCTGGACTACAGGTGGCCAGCGCGATATGACCAGTGGTGGGAGTGTAAATTCATTGCAGAAGGCATCATTGATCAAGGGGGTGGTTTTCGAGACAGCCTGGCGGACATGTCTGAAGAGCTTTGTCCGAGCTCATCAGAGTGCCCCATGCCACTTCCATTCTTCACACGAACTTCTAACCAGGGGGCTGGAGAGGCCAGAGACTTCTATGTGCCAAATCCTTCATGTCGAGAATTCCACAAGTTTGAGTGGATTGGGCAACTAATGGGTGCAGCTCTTCGCGGAAAAGACTTTTTGGTTCTGGCTTTACCAGGGCTGGTGTGGAAGCAGCTGATTGGAGAATCTGTCAGCTGGACTAAAGACTTTCCTGCAGTTGATTCAGTGCTGGTGAAGTTGTTGGAGGCTATGGAGCATATGGACAAGGAGACATTTGATTTTAAGTTCGGCCAGGAGCTTGTATACACCACACCCCTGAGTGACGGACGGCTGGTGGAGCTGATCCCAGGAGGCAGTGGAGTGGTGGTTCGATATGAAGATCGCATGGAGTTCATACGCCTGGTACAGAAGTCCAGACTCGAAGAGAGCAGGGAACAGATTGCTGCCATGCAGGCAGGACTGGTGAAAGTGGTGCCGCAAGCTGTGCTTGATCTCCTGACATGGCAGGAAGTGGAGAAGAAAGTGTGTGGAGACCCAGAGATCACAGTAGAGGCCCTTAAACGCCTCACACGCTATGAAGACTTAGAACAAACGGATGTCAGAGTGCAGTACTTATGGGAAGCCCTAATGAACTTCACCAATGAGGATCGCAGCAGGTTTTTGAGATTTGTGACTGGAAGAAGTCGTCTTCCTGCTCCGATTTATATCTTCCCGGACAAACAAGGATCTGAAACCACAGATGCACTTCCTCAATCTTCCACATGTTCCAGCACCCTTTATCTACCAAAATACCCAAGTGCTAAAGTTTGTGAAGAGAAGCTTCGCTATGCTGCATATAATTGTGTGGCCATCGATACAGACATGAGCCCTTGGGAGGAGTGACATGATTTTGCCATGTTTACGAATTTTACACACCaggatttttggcataaatgtACTGTAGCCTTCAGCAACGTGCACATGACCATGCCTACACTATTGCCAATTAcatctgtacagtataaataaatatgttataaacAATA

Function

symbol description
hectd3 Predicted to enable ubiquitin-protein transferase activity. Is expressed in hatching gland; notochord; and polster. Orthologous to human HECTD3 (HECT domain E3 ubiquitin protein ligase 3).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase HECTD3 isoform X2

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K12233 HECTD3; E3 ubiquitin-protein ligase HECTD3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262124.1 True 2988 mRNA 0.50 21 12270888 12278067
XM_043262125.1 False 2986 mRNA 0.50 21 12270887 12278067
XM_043262126.1 False 2983 mRNA 0.50 21 12270887 12278067

Neighbor

gene id symbol gene type direction distance location
efna2a efna2a,LOC107688504,LOC107729478,LOC107584867,LOC107602547,LOC107732508,LOC107674409 coding upstream 14000 12204405 ~ 12256887 (+)
ptbp1a ptbp1a,LOC107602545,LOC107732511,LOC107674042,LOC107584874 coding upstream 69742 12191229 ~ 12201145 (+)
palm1b LOC107729325,LOC107688502,LOC107584893,LOC107674018,LOC107732516 coding upstream 80951 12176228 ~ 12189936 (+)
plppr3a plppr3a,LOC107584910,LOC107729344,LOC107688501,LOC107732518,LOC107674011,LOC107602549 coding upstream 101970 12156094 ~ 12168917 (+)
grin3ba LOC107722525,LOC107586537,LOC107688545,LOC107674402,LOC107602513,LOC107732504 coding upstream 120718 12111956 ~ 12150169 (+)
rps8a rps8a,rps8,LOC107674081,LOC107688507,LOC107602544 coding downstream 665 12278732 ~ 12281207 (+)
LOC122328992 NA coding downstream 1844 12279911 ~ 12280014 (+)
LOC122328989 NA coding downstream 2523 12280590 ~ 12280659 (+)
LOC122328950 NA coding downstream 3305 12281372 ~ 12281504 (+)
lrrc42 LOC107729432,LOC107586495,LOC107602539,LOC107688527,LOC107682545 coding downstream 55720 12333787 ~ 12336926 (+)
G11419 NA non-coding upstream 169761 12100875 ~ 12101126 (+)
G11207 LOC107688485,LOC107585026,LOC107550612,LOC107709892,LOC107722651 non-coding upstream 652024 11614241 ~ 11618863 (+)
LOC122328936 NA non-coding upstream 657321 11609251 ~ 11613566 (+)
G11191 NA non-coding upstream 814023 11456326 ~ 11456864 (+)
G11190 NA non-coding upstream 815479 11454258 ~ 11455408 (+)
G11505 NA non-coding downstream 59600 12337667 ~ 12339049 (+)
G11590 NA non-coding downstream 267286 12545353 ~ 12545592 (+)
G11593 NA non-coding downstream 336308 12614375 ~ 12614596 (+)
G11595 dsela,LOC107679326,LOC107584692,LOC107728919,LOC107714854,LOC107674195 non-coding downstream 337928 12615995 ~ 12621414 (+)
G11618 NA non-coding downstream 419019 12697086 ~ 12697294 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other upstream 333297 11908073 ~ 11937590 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 763183 11482104 ~ 11507704 (+)
rps28 NA other upstream 826316 11422090 ~ 11444571 (+)
mrpl34 LOC107688463,LOC107585198,LOC107722555,LOC107680228 other upstream 929776 11339735 ~ 11341111 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other upstream 932418 11303678 ~ 11338469 (+)
LOC122358236 NA other downstream 345756 12623823 ~ 12626387 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other downstream 589862 12867929 ~ 12874008 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other downstream 1897297 14175364 ~ 14179615 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 2468040 14746107 ~ 14753161 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other downstream 2498255 14776322 ~ 14782977 (+)

Expression


Co-expression Network