acadm (acadm,LOC107688505,LOC107584839,LOC107674066,LOC107602542)


Basic Information

Item Value
gene id acadm
gene name acadm,LOC107688505,LOC107584839,LOC107674066,LOC107602542
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12267085 ~ 12270472 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262127.1
GcgttatataataaaagtaggGCAAAAGTCACTAGAGCGACGGTGCTTAATCACGTGATAAAACCGAGGCCGATTATTGGTTGGTGTCTGAGGTGAGCGTTGTAAGGGCACTGAAGGATCTTAGCATTGTCGACAAGCAATAACGATGATTTTTAATAAGGTTTTAAGAGCAGGTTTTCAGGCTGGATTGAGGTTTCAGAGTACTGGACCTCAAGCTAGTGCCAAAGCGGCTACTGCTGCCTTGAAGGAATCTCTTGGAGGCTTTAGCTTtgAACTAACTGACCAGCAGAAAGAGTTCCAGGAGGTGGCAAGAAAGTTTGCACGGGAGGAGATTGTCCCAGCTGCTCCATCATATGACAGAAGTGGTGAATATCCATTTCCTCTCATTAAGAGAGCATGGGAGTTGGGTCTAATGAATGGACATATTCCAGAGGACTGTGGTGGAATGGGTCTGGGCATATTTGATGCCTGTCTCATCACAGAGGAGCTGGCCTTTGGCTGCACTGGAGTACAGACAGCCATTGAGGCAAACTCTCTGGGACAAATGCCTGTCATTATTGCTGGTAATGATGCCCAGAAGAAGAATTATTTGGGCAGAATGACAGAAGAACCACTAATGTGTGCGTACTGTGTGACCGAGCCGGGAGCAGGCTCTGATGTGGCTGGGATAAAGGCGCGGGCTGTTAAGAAAGGAGACGAGTATGTGGTCAATGGTCAGAAAATGTGGATCACCAATGGAGGAAAAGCAAACTGGTACTTCCTGCTGGCCCGCACTGATCCTGATCCCAAATGCCCTGCTAGCAAGGCTTTCACAGGCTTTATTGTTGAAGCTGACACCCCAGGAGTCCAGCCTGGCAGAAAGGAATTAAACATGGGCCAGAGATGCTCAGACACCAGGGGCATCACGTTTGAGGATGTGAGAATCCCGAAAGAGAATGTTTTGATAGGAGAAGGAGCCGGCTTCAAGATTGCCATGGGTGCATTCGACAAGACTAGACCACCAGTTGCTGCAGGTGCCACAGGACTTGCACAGAGAGCACTGGAGGAAGCCACAAGGTATGCTTTGGAAAGAAAGACATTCGGCAAGTTTATTGCAGAGCACCAGGCTGTGTCATTCATTTTGGCGGAAATGGCCATGAAAGTTGAGCTTGCCAGAATGGCCTATCAGAGAGCAGCCTGGGAAGTGGATCAAGGGCGCAAGAACACCTATTACGCCTCGATCGCTAAAGCCTTTGCCGGAGACATTGCAAACCAGTGTGCCGCTGATGCCGTCCAGGTCTTTGGTGGGAATGGTTTTAATAGTGAATATCCTGTGGAGAAACTGATGAGAGATGCTAAGATTTACCAGATTTATGAAGGGACTGCACAAATCCAAAGGCTTATCATCTCAAGAGAACACCTTGGGAAATTCAAACAGTGAACCTGTAAACCCAGGACTTCCATGCCAAGAGCTAATCGTTTGGTTCAGCGCCTTTTTATATgtgacaatgttttttttgatcAATAGATCTCAGGATTGTATCTCAGAGATTGTAAGTTGCCTACACAGATCTCCAGTTGCCTTATGTCATATCAGCATGTCTTGCCGTCTTTTTTGTGTTGAACAACTAAGTTGATCAAAGCTGAACAATGTAACATAGTGTCACAGCTCTTCCTCTGGTTCTTTttgtaactgattacatgttcaaaactaaataaataatctgtttaAAACCA

Function

symbol description
acadm Predicted to enable medium-chain-acyl-CoA dehydrogenase activity. Predicted to be involved in fatty acid beta-oxidation and medium-chain fatty acid catabolic process. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in female organism and liver. Human ortholog(s) of this gene implicated in medium chain acyl-CoA dehydrogenase deficiency. Orthologous to human ACADM (acyl-CoA dehydrogenase medium chain).

NR:

description
medium-chain specific acyl-CoA dehydrogenase, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K00249 ACADM, acd; acyl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262127.1 True 1716 mRNA 0.46 12 12267085 12270472

Neighbor

gene id symbol gene type direction distance location
rabggtb rabggtb,LOC107584851,LOC107732517,LOC107576861 coding downstream 963 12261916 ~ 12266122 (-)
cldn11a cldn11a,LOC107586547,LOC107732506,LOC107550596 coding downstream 172504 12092365 ~ 12094581 (-)
ghsra LOC107586567,LOC107722546,LOC107688542,LOC107732507,LOC107550603,LOC107680230 coding downstream 363127 11901080 ~ 11903958 (-)
nceh1a nceh1a,LOC107709885,LOC107722613,LOC107688490,LOC107584973,LOC107550609,LOC107680241 coding downstream 572607 11691551 ~ 11694478 (-)
pccb pccb,LOC107688488,LOC107722577,LOC107709888,LOC107680238,LOC106574468 coding downstream 582026 11679913 ~ 11685059 (-)
best4 best4,LOC107729385,LOC107674419,LOC107714835,LOC107602543 coding upstream 11610 12282082 ~ 12286011 (-)
si:ch211-106k21.5 si:ch211-106k21.5,LOC107688547,LOC107729472,LOC107714834,LOC107674086,LOC107602518 coding upstream 16953 12287425 ~ 12292955 (-)
LOC122328397 LOC107688509,LOC107729466,LOC107714866,LOC107674362,LOC107602512 coding upstream 22876 12293348 ~ 12319104 (-)
ndc1 ndc1,LOC107674092,LOC107602511,LOC107584806,LOC107688508 coding upstream 49198 12319670 ~ 12327438 (-)
zgc:113691 zgc:113691,LOC107714832,LOC107729460,LOC107586526,LOC107674428,LOC107688550,LOC107688549 coding upstream 57320 12327792 ~ 12329094 (-)
G11429 NA non-coding downstream 230656 12035009 ~ 12036429 (-)
G11425 slc2a2,LOC107586013,LOC107722632,LOC107680265,LOC107550598 non-coding downstream 234005 11943133 ~ 12033080 (-)
G11426 NA non-coding downstream 235360 12028135 ~ 12031725 (-)
G11366 NA non-coding downstream 447286 11817020 ~ 11819799 (-)
G11350 NA non-coding downstream 484684 11780111 ~ 11782401 (-)
G11549 NA non-coding upstream 1271 12271743 ~ 12272390 (-)
G11551 LOC107657932,LOC107700454,LOC107585903,LOC105895027,LOC107549844,LOC107743876,LOC107710907,LOC107579213 non-coding upstream 9286 12279758 ~ 12281210 (-)
G11565 NA non-coding upstream 68804 12339276 ~ 12359064 (-)
G11572 NA non-coding upstream 82007 12352479 ~ 12353826 (-)
G11561 NA non-coding upstream 91179 12361651 ~ 12366865 (-)
hltf hltf,LOC107688483,LOC107722619 other downstream 652147 11592441 ~ 11614938 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other downstream 689569 11576391 ~ 11577516 (-)
crsp7 crsp7,LOC107722610,LOC107688472,LOC107550620,LOC107709903,LOC107585090,LOC107680253 other downstream 813882 11447089 ~ 11453203 (-)
cnn2 cnn2,LOC107585101,LOC107688471,LOC107709904,LOC107550622,LOC107680261 other downstream 821972 11440990 ~ 11445113 (-)
kcnn1a LOC107722564,LOC107585128,LOC107718068,LOC107680246,LOC107589798 other downstream 861385 11379243 ~ 11405700 (-)
xkr4 xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249 other upstream 519052 12789524 ~ 12838093 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other upstream 1044757 13315229 ~ 13470263 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other upstream 1283301 13553773 ~ 13564365 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other upstream 2308523 14578995 ~ 14610266 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other upstream 2850115 15120587 ~ 15127491 (-)

Expression


Co-expression Network