tnika (tnika,LOC107688496,LOC107722539,LOC107680235)


Basic Information

Item Value
gene id tnika
gene name tnika,LOC107688496,LOC107722539,LOC107680235
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11946162 ~ 12024898 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262740.1
TCTCAAGACAAGCGGCATTGAGATTTCAGCGACAGCGTTAGAGACCGAAAGATGTGTAGCTCCTGCTGAAAAACACGCTGTCCTCAGACTAAACGATGTTACTGTTTGCCGGGGTCGAATCGAACTGAGGTCTAGCAAAAGCATCGGTGGGATCCAGAGTTAAAAGACGGATTGTACAATAAGCACGAGCGATCAGCGAGACGAGATTTGAACGCGCTGCTGCTGCCGTAGGAGATCAGCGGACGGCTGCCCGAGATCTATTCAAcaacatttctttgtttcttcGCGTAATTCCGGTTTTCTTTCGTCTTTAATATGGCGAGCGATTCTCCGGCTCGGAGCCTGGATGAAATAGACCTCTCCGCGTTAAGGGACCCTGCAGGAATATTTGAGCTTGTGGAGCTTGTCGGGAATGGCACGTATGGTCAGGTGTACAAGGGCCGACATGTCAAAACAGGTCAACTGGCTGCCATCAAGTGCATGGATGTCACAGGGgaggaagaggaggagatcAAAGCTGAGATCAACATGCTGAAGAAATACTCTCACCACAGGAACATTGCCACCTACTATGGTGCCTTCATTAAAAAGAACCCTCCCGGTGTGGACGACCAGCTGTGGCTGGTGATGGAGTTCTGTGGCGCAGGCTCAGTGACAGACCTGATCAAGAACACCAAGGGCAACTCACTGAGGGAAGACTGGACTGCCTACATTAGCAGAGAGATCCTCAGGGGCCTCACTCATCTCCACCATCACAAAGTCATCCACAGAGACATCAAAGGCCAGAATGTGCTGCTAACAGAGAACGCGGAGGTCAAACTAGTGGACTTTGGTGTGAGTGCACAGCTGGATCGCACCGTGAGCCGCAGGAACACTTTCATCGGTACTCCTTATTGGATGGCACCAGAAGTCATCGCGTGTGACGAGAACCCTGACGCCACGTATGACTACAAGAGTGACCTGTGGTCGTTGGGAATCACAGCCATTGAGATGGCTGAAGGAGCCCCACCCCTTTGTGATATGCACCCAATGAGAGCCCTGTTTCTGATCCCTAGAAACCCGGCTCCCAGGCTCAAGTCCAAGAAGTGGTCTAAAAAGTTCCAGTCATTCATTGAGAGCTGTCTGGTGAAAAACCACAACCAGAGGCCCAGCACAGAGCAGCTCCTCAAACATTCTTTTATCCGAGAACTGCCCAACGAGAGGCAGATCCGCATTCAGCTGAAGGACCACATCGACCGCACCAAGAAGAAGAGAGGCGAGAGAGATGAGACGGAGTATGAGTACAGCGGGAGTGAAGAGGACGAGGAGGAGCACGACATGGGAGAAGCCAGCTCCATCATTAACATACCCGGAGAGTCCACTCTGAGGCGGGATTTCCTACGGCTGCAGCTGGCCAATAAGGAGAGATCAGAGGCCCTGCGCCGACAGCAGCTGGAACAACAGCAGAACGAGGGACACAAGCACCAACTACtggcagagagacagaaacgCATTGAGGAACAAAAAGAGCAGAGGCGCCGATTAGAAGAGcAACAGCGGCGTGAACGTGAGCTCAGGAAGCAGCAGGAGAGGGAGCAGAGGCATCGCTATGAGGAGCAGCTCCGTCGAGATGAGGAGAGGAGACAGGCCGAGAGAGAGCAGGAGTATATCCGTCGTCAGTTGGAGGAGGAACAGAGGCAGCTCGAGATTCTGCAGCAACAGCTTTTGCAAGAGCAGGCACTCCTACTGGAGTATAAACGTAAACAGCTGGAGGAacagagacaggcagagagaCTGCAAAGACAGCTCCAACAAGAGAGAGCTTACCTTGTATCtctccaacaacaacaacagcagcagcagcagcaacaacaagaccccagacctGCAGAGAAGAAGCAGCTCTATCATTACAAAGATGTAGTCAACCCCAGCGATAAACCTGCCTGGGCCAAAGAGGTTGAGGAGCGCTCTAAACTGAACCGCCAGAGTTCTCCTGCCCTGCAGCATAAAGTGGCTAACCGTATCTCCGACCCTTCCCTTCCACCACGCTCAGAGTCCTTTAGCAGTGGGGGTATGCAGCCAGCACGGACCCCTCCTATGCACCGCCCTGTGGAGCCTCAGATGGCTCATTTGGTTCCAGTGAGATCCCATAGCTCCTCTCTGTCAGTCTCTCAGTCCTTGCATGATCAATCTGCCAAAGGCGTTTCAGCCTTTCAGGAGAGTCTGGTGTCCCATCGGCCAGAGATGCCACGGCAGAACTCCGACCCGACTTCAGAGATGCCCCCTCCGGCCCCTCGCATGGCCAGCCGCGAGGAAAAGCCTGACCGCAGTTCCCCCTGGCTAATGGAAGAAGATGTTCCTCCCAAGGTGCCTCAGCGGACTACTTCTATCTCTCCTGCTCTGGTGAGGAAGAACTCTCCTGGAAACGGAGAGTCTGGAGGGGGGCGAGCGGCCTCCCAGCTCATCGCACCCAGTAATCCAGACCTGAGGAGGACAGAGATGTCCCTGGATGTGGCTCTGCAGAGAACCAGCAGTAACAGCTCATCCAGCTCCAGCACGCCCAGCTCTCAGGGCGGCTCGCAACCTGGATCCAGTGAAAGGAACCAGCCCAAAGGCTCTGGTAAATCAGAAGGATCTCCAGTGGCATTACAGGAGACTTCCAAACCCATTCAGGAGGAGAGCAGAGAGTTGAGCAAACCTGGTCGACCTGCGgatCTGACTGCCCTGGCTAAAGAACTGAGGGAGTTGCGAATAGATGAAATTAACCGGCCGCCCCTTAAACTGACCGACTACTCCTCCTCCAGTGAGGACTCTGAGAGCAGCGAGGATGAGGATGGTACTGTGGGGCATGATGGCACAGTGCCAGTCAGTGACATCCCAAGGATCATGCCCTCCGTTCAGGGGAATAATGAGTCTTTCACGAGCAGCCGTGATGAGTCCTTCGGCGACTCCTACAGTGATGAGTCTAAGGATGGCACTCTAAGAATGAGAGAGACCAGTGAGAGGCAGCGTTTGGGACACGGCGAGAGCAATGGTTTCGCAGGCCACGGGAACCTACCAGACCTGGTGCAGCAAAGCCACTCCCCATCAGGAACTCCAACAGGCCTCAATTCCCAGGACCTGGACTCTATGGATGAGtttgGTCATGGAGGTGGTTCGAAAGCTTCTTTCACTCCTTTTGTGGACCCACGTGTGTATCAGACCTCCCCCACAGACGACAACGATGAGAGCTCAGCGGCCGctttgtttgcTAATGAGCTGTTGCGTCAGGAACAGGCCAAACTGAACGAGGCTCGCAAGATCTCCGTGGTCAATGTCAACCCCACCAACATCAGACCTCACAGCGATACGCCAGAGATCCGCAAATACAAGAAGCGCTTCAACTCAGAGATCCTGTGTGCTGCTCTTTGGGGTGTGAACCTTTTGGTGGGCACTGAGAATGGTCTAATGTTGCTGGACCGCAGCGGTCAGGGCAAGGTGTATAACCTCATCACTCGCCGGCGCTTCCAACAGATGGACGTGCTAGAGGGTCTAAACGTCCTGGTCACCATATCAGgaaagaaaaacaagctaCGTGTCTACTACTTGTCATGGCTGAGAAACAGGATACTGCACAACGATCCAGAGGTAGAGAAGAAACAGGGCTGGATCACTGTTGGGGATCTGGAAGGCTGTATTCACTATAAAGTTGTGAAATACGAGAGAATCAAATTCCTGGTGATCGCACTGAAGAGCTCTGTGGAGATTTATGCATGGGCCCCCAAGCCGTACCACAAATTCATGGCTTTCAAGTCGTTCACAGAACTGCAGCACAGGCCTCAGCTGGTGGACCTGACTGTAGAAGAGGGTCAGAGGTTAAAGGTCATCTATGGCTCTAGTGTGGGCTTTCACGTCATAGATGTGGATTCTGGAAACCCTTATGATATCTACATACCATCACATATCCAGAGCAGTGTGACCCCTCATGCCATCGTGGTGCTTCCAAAGACTGATGGCATGGAGATGCTGCTGTGTTATGAAGATGAGGGTGTTTACGTGAACACCTACGGCAGAATCACCAAGGATGTGGTCTTACAGTGGGGAGAGATGCCCACCTCTGTTGCATATATCCACTCCAACCAGATCATGGGCTGGGGAGAGAAAGCCATTGAGATCCGCTCTGTTGAAACGGGCCACCTGGATGGTGTTTTCATGCACAAGCGAGCTCAGAGACTTAAGTTCCTCTGTGAGAGGAACGACAAGGTGTTCTTCGCCTCTGTCCGATCAGGCGGCAGCAGTCAAGTTTTCTTCATGACACTGAACAGGAACTCTTTGATGAACTGGTGAAGCTCCTGCAGACCAAACACTGTGGAGTCTTTTTCCTGTCAGAATTGCATCTGTGAGCGCACGGTACATTGACACTTTGGTctgaaaaagattttaaaaaatattagagaCTCTTGAGGAGTGAGCTTGGAGACATGGGTCCGTCCCGTAGGTAGAGCTCTGGCTCTCTGCACACGGCTCATGGAGGTGCAGTATCTGACGTCACCTGCAGTGGCACGCAGCTCCCAGAAGAGGGGGCTGATTAACTTGAACTTGGTTTTAGACCTTATTTGTGGCCTCTGGTAAAGCCTGTTCTTTTAGGGTCCTCCCCTTTACGTTCCCGTCCTTGGTTTCCAATTGGTTTTGATCGACTTTTCCCTCAGTTTCCAATGAATTTTAGTCAGTTGCATGATTGTAAAGAATCGGACAATATTTAAAAGATAACAAACGTGGGGATTACATTAGCAAGCACTCAGGCTAAGACCGAGCTTTAGTCTCTTgatgtttcactttaaaatattggCGAACACTTCCGCCAGTTTCACAAATATCCGCGATGCCCGTTTTTTGGTCCGATTTCTCAAAAGAGAACGACATgctcaaaagaaacaaataacacTGGTGCTCATTTGTATATTGTCAACAAGAtccatatactgtacatttatccAAAGTACTGTATCTCAAAGTATAGCTGAGTTTGTTTTATAGCTTTGAGGTTGGAAATACGGAGCCGAACGGATCACGAACGCATCTTTAAGTTGCATACCATGCTTTGAATTCTTTCTCTGGTCCTTTTTTGGAATGTTTGAAACCTAAAGGAACAGAAGCACGAAAGTTGACTGAGTGAAATCTAGTCATACGTGGAAGAAAACGGTCCTCCTCACTGGTTGCATGTTTGTGTAGACACTGGATCAGATGTTGTGTGATGTGTATGTCAGAGCAACATGATATCTgagatcaaaaagaaaaaaaaattacaaatagaaagaaaaaggataaaagataaaagcacCTGTATTTCAGTGACGACTGAGAGTTGGTGATGACTTTATTTAGATTACATTATAGTGCCTAGCACAAATTAACCTGTGTGAAATCAATCTTTAGAGGCactttgattttctatttttGCATCTTGTATTCTTACGCCATGACTGTTGTTTTTGAGCCATCTTTTGTAGGCTGTAAGTCTCGCTTCTCAGCATTTCGAAGGATTCAGCATTGTTATATTAAGCttcttacttttattttgtcacaATGTTTAATCAGTCAAATGGCGCTCAAAACATTCCAAAAAGGGAAAAGGGTCTTCACAATTATGTCTCTTggacaaaaatatcacaaattttGAAACTTCTTGGTACAAATGTTGGTACAGAACTACTACAATAAGTCAACAGATATTAAccataatgtattgtttttgtattgttcattagatctttttttttttttttttttttttttttttttttagtttactttaCTTCTTACTCtacttctgttttgttttatatgtttgcCTGGGTCTTCAGTTCAACGCTTTAGATGTTCTCAAGTAAGTCACTTGATGTTTGCACactatatagatatttatatttctttcacaTCTCTTACATagcaaaagaagatattttaatggtGAGGGAATGAAAGGTTTTTAGCAATAATGTCCTGctgatgtatgtatgtatgctgtGTGAAACACTGTGTTCGGCCAGTGCTGGGGAAGAACCTCACTGAGCTCTTTTAATTAACTACTTTATTTGACACTCAAGAATGGTTACTTAATGTTTCTGTCTTAATACGTTTTTAATGATCGTCGAAGCTGTAAACAAGATCCTTGTTTCTTTTACGGTGATAGAAGCACTATGTCCtcctttttttggtttgtttttttattttatgataagaaaaaataaacaaataagtacCTTTT

Function

symbol description
tnika Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within convergent extension involved in gastrulation and regulation of cell shape. Predicted to be active in cytoplasm. Is expressed in nervous system and neural tube. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human TNIK (TRAF2 and NCK interacting kinase).

NR:

description
PREDICTED: TRAF2 and NCK-interacting protein kinase-like isoform X4

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006468 protein phosphorylation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0008360 regulation of cell shape biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function

KEGG:

id description
K08840 TNIK; TRAF2 and NCK interacting kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262740.1 True 6229 mRNA 0.48 32 11946162 12024898

Neighbor

gene id symbol gene type direction distance location
fndc3ba fndc3ba,LOC107688494,LOC107584937,LOC107722494,LOC107732513,LOC107680249,LOC107550601 coding upstream 46784 11787692 ~ 11899378 (+)
ppp2r3a ppp2r3a,LOC107722551,LOC107550604,LOC107732512,LOC107680219,LOC107584952 coding upstream 163755 11710184 ~ 11782407 (+)
msl2a LOC107722612,LOC107688489,LOC107584967,LOC107709889,LOC107680240,LOC107550607,LOC107709890 coding upstream 255239 11685777 ~ 11690923 (+)
stag1a stag1a,stag1,LOC107722576,LOC107688487,LOC107586054,LOC107709887,LOC107680237 coding upstream 266240 11640359 ~ 11679922 (+)
gyg1a LOC107709894,LOC107722604,LOC107688484,LOC107550614,LOC107680244,LOC107585020 coding upstream 340529 11598887 ~ 11605633 (+)
slc2a2 slc2a2,LOC107550598,LOC107680265,LOC107722632,LOC107586013 coding downstream 378 12025276 ~ 12033082 (+)
eif5a2 eif5a2,LOC107584931,LOC107722594,LOC107688499,LOC107680233,LOC108442333,LOC103022137,LOC105908511 coding downstream 10096 12034994 ~ 12039475 (+)
slc7a14a LOC107584921,LOC107688500,LOC107722625,LOC107680258,LOC107550597,LOC107732514,LOC108442332 coding downstream 43363 12068261 ~ 12089926 (+)
grin3ba LOC107722525,LOC107586537,LOC107688545,LOC107674402,LOC107602513,LOC107732504 coding downstream 87058 12111956 ~ 12150169 (+)
plppr3a plppr3a,LOC107584910,LOC107729344,LOC107688501,LOC107732518,LOC107674011,LOC107602549 coding downstream 131196 12156094 ~ 12168917 (+)
G11207 LOC107688485,LOC107585026,LOC107550612,LOC107709892,LOC107722651 non-coding upstream 327299 11614241 ~ 11618863 (+)
LOC122328936 NA non-coding upstream 332596 11609251 ~ 11613566 (+)
G11191 NA non-coding upstream 489298 11456326 ~ 11456864 (+)
G11190 NA non-coding upstream 490754 11454258 ~ 11455408 (+)
G11189 NA non-coding upstream 492051 11453571 ~ 11454111 (+)
G11419 NA non-coding downstream 75977 12100875 ~ 12101126 (+)
G11505 NA non-coding downstream 312769 12337667 ~ 12339049 (+)
G11590 NA non-coding downstream 520455 12545353 ~ 12545592 (+)
G11593 NA non-coding downstream 589477 12614375 ~ 12614596 (+)
G11595 dsela,LOC107679326,LOC107584692,LOC107728919,LOC107714854,LOC107674195 non-coding downstream 591097 12615995 ~ 12621414 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other upstream 8572 11908073 ~ 11937590 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 438458 11482104 ~ 11507704 (+)
rps28 NA other upstream 501591 11422090 ~ 11444571 (+)
mrpl34 LOC107688463,LOC107585198,LOC107722555,LOC107680228 other upstream 605051 11339735 ~ 11341111 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other upstream 607693 11303678 ~ 11338469 (+)
LOC122358236 NA other downstream 598925 12623823 ~ 12626387 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other downstream 843031 12867929 ~ 12874008 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other downstream 2150466 14175364 ~ 14179615 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 2721209 14746107 ~ 14753161 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other downstream 2751424 14776322 ~ 14782977 (+)

Expression


Co-expression Network