stag1a (stag1a,stag1,LOC107722576,LOC107688487,LOC107586054,LOC107709887,LOC107680237)


Basic Information

Item Value
gene id stag1a
gene name stag1a,stag1,LOC107722576,LOC107688487,LOC107586054,LOC107709887,LOC107680237
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11640359 ~ 11679922 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262822.1
GAAAGTTTTTATTGTTTCGCACACATTACATGCTATATTTGATGTCTTAATTTTGTGTAGGCAAATAGCACAGAAATACCAGAAGaagcaaattacatttaatatatatatttttagatttacttgctttttatatgttttgcaCAGCATCTGATCTGGTCTGATGAGTTGTTTTCATTGTGATTCAGACCTTCCTGCTTAATTTCGAATGACTCATCAGCCCTGTAACAAAACGAGAGGCCAGTGCGGACCAGACAACAGCTCTAGGCCCTGTGAAGACCACCCACATACATTACTCTCCAATCCCCTGGTGCAATTACACAAAGGTCATTGCAGATTAGACAATTACTAAAGACTGAGAgctttaatatattgttttcacATAAAAAGAAAGCACGCATAAAACCCAGTCAACAAGATTCAATTAACAAAAGCAGAAAAGGGAGAAATAAAAAGGAAGTAAAAAATGATcattcttggaaaaaaaaaaatcaatggagCGTTCAGTATGCTAtgcaattaaaactaatttattccAGTTACACAGAACAACACATATTATAACACATAGTAcaataattcaattttattgtatattaaatattgtatataatatccATTTTATGCTTATATTTAACCCACATTCAAACACGATTCATAGAAATGATTGTGTTTACAGGAGTTCCTGAGACATCGATCACCAAAGGAATGAAATATACCGTTAAATCGTATATGCTGGCCGATTATGTGTTATCATTGTACAGTTTAAACGATTACAAGCCCGAGTCCTTCCGAAGAAGAAACGCGCCAAGATCGTGTTATTTTAGCGCCTAAACAGCGTACGAGCCCGTCGTGGCTGTGAGGGGTCTCTCCTCCTCCCCCCGCCACCGCCCGCCGGTCTTCGGCTGTTCTCGGCTGTGTCCGCCAGAGGGCGCCCGGGCTCCGGTGTCAACACGCGCCATTCGATTGTGGAAAATGCCACCAGATGGCGGTTTAGGATTGCTGCTCTTCTGAAAGGCGCGGTTCCTTCTCCCGGTCcaattttcaattaataaatccatatttagcaaaaaaaatatcGAATTCCGAATAGCGGGAACGCCGACCTTTGCGACCATGAGCATCCCAGGAAACAATTTCGTTATTCCAATAAAGcacttgagagagagagagagagagcgagcgaagGTCCGTCTCGACTGCATTAGCAGATTGATTCTGCTGAACATGAGGAGCAGATGAAGGCTCAGTGTTGCGGTGTTAATACTGTGATCAGCCCTTGAAGCGCGCAGAGCTGTAACCCGCCGTCATCATGATCACCTCAGAGCTGCCGGTGCTACAGGACTCGGGCTAGTCGGGTCAGGACACAGTGAGTCTCAGTATGAGTATGAGTGAGCTGGACGACCCTGGAGATGGAAAGAGCAAGAAGAAGAGAGGCCGGCCTGGCAGACCACCGGCAACTAACAAGAAACCTCGGAAGTCCCCTTTAGACAAGTGCCCTATGGGAGTCCAGCGGGGGAGGAAGGCCAATGGAATGACCCAGCAGAACGGAGAGGGTGAACCGGTCACTCTGTTTGAAGTGGTCAAACAGGGAAAGAGCGCTATGCAGTCGGTTGTTGATGACTGGATCGAGTCATACAAGCAAGACAGGGATTTAGCACTTCTGGACCTCATTAACTTCTTCATCCAGTGCTCTGGCTGTAAAGGCACCGTAAGAATCGAAATGTTTCGCAACATGCAGAATGCTGAAATTATCCGCAAAATGACAGAAGAGTTTGACGAGgaCAGTGGCGATTACCCCTTGACTATTTCTGGCCCGTTGTGGAAGAAGTTTCGCTACAACTTCTGTGAGTTCATCTGCGTCCTGATCCGCCAGTGCCAGTACAGCATCATCTACGACGAGTACATGATGGACACGGTCATCTCTCTGCTAACGGGTCTGTCAGACTCACAGGTTCGAGCCTTCAGGCACACCAGCACCCTAGCAGCTATGAAGCTTATGACAGCCCTGGTGAACGTAGCTCTGAATTTGAGCATTAACCAGgacaacacacagagacagtATGAAGCCGAACGCAACAAAATGGTGGGCAAGAGAGCCAATGAGAAGCTTGAGCTCCTACTTCAGAGAAGGAAAGAGCTTCAGGAAAACCAAGATGAAATCGAAAACATGATGAACTCGATCTTCAAGGGAATCTTTGTTCATCGTTATAGGGATGCGATTGCTGAAATCAGAGCAATTTGTATAGAAGAGATCGGTGTGTGGATGAAAATGTACAGCGATGCCTTCCTGAACGACAGCTACCTGAAGTACGTCGGCTGGACCTTACACGATCGGCAAGGCGAAGTGCGCTTGAAGTGTTTGAAAGCCTTGCAAAACCTCTACACGAACCGTGAACTGTTTCCAAAACTCGAACTCTTCACAAACCGTTTCAAGGATCGTATCGTGTCTATGACACTGGATAAAGAGTACGACGTGGCTGTGGAGGCCATCAGACTGGTCACTCTGATCCTCCAGGGTAGTGAGGACGCTTTATCTAATGAGGACTGTGAGAATGTCTATCATCTGGTGTACTCCGCTCACAGGCCTGTGGCAGTCGCTGCTGGGGAGTTTCTACATCGAAAGCTGTTTAGCAGACATGATCCTCAGGCCGAGGAAGCTCTGGCCAAACGCAGAGGCAGGAGCAGCCCAAACGGAAACCTCATTCGCATGCTGGTGCTCTTCTTTTTGGAGAGCGAGCTGCACGAACATGCTGCCTATCTAGTGGACAGTTTGTGGGAGAGCTCTCAGGAGCTGCTGAAAGACTGGGAGTGCATGACTGAGCTGCTGCTGGAGGAGCCGGTGCAGGGCGAGGAGGTGTTATCAGACAGGCAGGAGAGTGCTCTGATTGAGCTGACCGTCTGTACCATTCGTCAGGCTGCTGAAGCCCATCCGCCCGTGGGCAGAGGGACTGGGAAAAGGGTCTTGACTGCGAAGGAAAGGAAGACGCAGATCgatgacaaaaacaaattaacagaGCACTTCATCATGGCTCTTCCCATGCTACTCTCGAAATACCAGACGGACGCAGAGAAAGTAGCCAACCTCCTACAGATCCCGCAGTACTTTGACCTGGATGTGTACAGTGCTGGGAGGATGGAGAAGCACTTGGACGCGTTGCTAAAGCAGATCAAGTTAGTGGTGGAGAAGCACACGGACACGGAAGTGCTGGAGGCCTGCAGTAAGACCTACAGCATCCTGTGCAGCGACGAGTACACCATCATGAACCGCGTGGACATCGGCCGCAGCCAGCTTATCGATGAACTAGCCGACCGCTTCAACCACTCGGTGGAGGAGCTGCTGCAGGCGGGGGAAGAGGCGGACGACGACGACATCTACAATGTTCTCTCCACTCTCAAGAGACTCACAGCCTTTCACAATGCTCATGACTTGACCAGATGGGATTTGTTTGGGAACTGCTACAGGTTGTTAAGGACTGGAATAGAGCAGGGATCTATGCCAGAGCAGATAGCAGTACAGGCTCTTCAGTGTTCTCATTACTCCATACTGTGGCAGCTTGTGAAGATCACAGAAGGCGCTCCATCCAAGgaTGATCTCCTAGCGCTTCGCAGGGTTGTGAAGTCTTTTCTAGCTGTGTGCCAGCAGTGTTTATCCAACGTCAACACACCGGTTAAAGAGCAGGCGTTCATGCTGCTATGCGACCTCTTGATGATCTTCAGTCACCAGCTCACCACAGGGTCCAGGGAGGGTCTGCAACCTCTGGTCTTCAACCCAGACAGCAGCCTACAGAACGAGCTGCTCAACTTTATCCTAGACCATGTGTTTATAGACCAGGATGATGAGAATCAGAGTATAGAGGGTGATGAGGAGGATGAAGCTAACAAGATCGAGGCCTTACACAAGAGGAGAAACCTCTTAGCTGCCTTCAGCAAGCTCATCATTTATGACATAGTAGACATGCCAGCCGCTGCAGACATTTTCAAACACTACATGAAGTACTACAACGATTATGGAGACATCATCAAGGAGACTCTAAGTAAGACCAGACAGACGGACAAGATACTGTGTGCCAAAACACTCATCCTGAGTTTACAGCAGCTCTTTAATGAGCTGATCCAGGATCAGGGGCCTAACTTGGACAGAACCTCATCTCATGTGAGCGGCATTAAGGAATTGGCCCGTCGCTTTGCCCTGACCTTTGGCTTGGACCAGATCAAGACCAGAGAGGCTGTGGCCACGCTGCACAAAGATGGTATCGAGTTCGCCTTCAAGTATCAGAATCCTAAAGGACCAGAGTATCCCCCTCCGAATCTAGCCTTCCTGGAGGTTCTCTGTGAATTTTCCTCGAAGCTTCTTCGCCAAGACAAGAAAACAGTGCACACCTATCTGGAAAAGTTCATGACAGAGCAGATGATGGAGAGGCGGGAAGACATCTGGCTGCCTCTCATCTCTTACAGGAACTCTCTGCTGACGGGTGGAGATGAAGACCGCATGTCCATCACcagcggcagcagcagcagcaaagcTGGATCTATACGGAGCAAGAAGGGCCGTCCACCCATGCACAAGAAACGCATCGAGGAGGAGAGCGTGGAGAGCTCGTGGATGATGAGGAATGACGCCCTGCAGACTCCCGGAGGCCTGCAGACGCCCCAGCTCACCTCCACCGTGCTCCGAGAAAACCCCCGGCAAGCTGCTGAGCACCTCCCAGACCAGAACTCTGAGCCCGGCTCTGAATCCGACTACGTTCACAATCCTCAGATCCAGATGTCCTGGCTCGGCCAGCAGAAGATGGAGGAGGTGAACAGGAAAGAGCGCACAGCCATGAACTACATGAAGGCCCGCAGCGGAGGCGTGCGACAGACCGTACGGGGTCTCATGGAGGACGACGCAGAGCCCATCTTTGAGGATGTCATGATGTCGTCGCGAGGGCAGCTGGAGGACATGAGTGAGGAATTCGAGGACACCATGGTCATTGATCTGCCTCCTTCCAGGAACCGACGGGAGAGAGCAGAGCTAAGACCGGACTTCTTTGACTCTGCAGCCATGATCGAGGATGAGTCGGGTTTCACAATGCCCATGTTCTGATGTGCCACAACCGATGGAAAAACAGTATTTGAAGTGATTCAAGGGCTGAAGAGACATTCACATGAGAGCGGAAGCACTGGTGTCCAGGTTCAGAGATTCTGGAGCAAACTCTCCGCAAACCCTCAACTGTCCTCTTTTATCAAACGCCGCACAAGAGGAGCTTTTATTCATCCAGAGATTATTTTAACAGATGCGGTCCAGTCACGTCACACACGGTGAATCTTTCTGTCGAACAAGTTCTTTGTCAGCTCATTAGAATCGCACTGGATGGGATTTTACATTGTGGTACAAATTTATCATGTAAGAATGTACGGTCCTATATGTTCGAGATGTACATATTTGTGTTTATCCATCCTACTATGTATATGCCCTGTACAGTTAGAGTATGAAGTCGCTTTTACTATCAGGTCAACGAACGGATTTCTCCTACCCAGACGAGCGCTCGATCTTCGGTCTGAAACAACAGAACTACGGTAAATGAAGGAAGGTGGGTAACGTTTGGTCAGTGTTAAAAATGCAGTCATTATTGTCAGAAAGCCAAAAATCTCTGTGGCAGTTGAAGGGGCGTTACACTACGTATTGTGTATTTTGGCTTGCAGAAGAATTTGAATGGTCAGTATTTTATTTCCAGTAGATTTAGTTCTAATGAGGTGAGGTTTATTTGTGTGAGATGTCTATACGGCAGGGTTTTGGTCAGTTGCTCTTGTCCGGGGCCGCGTGTCGAGTCGGGCCCATCCGAGTATCGCCTCCGTTTAAGTGCTTTATGGTCCTGTGCTatcaaaaagtgaaatgttaTACCGTCAGCAACATGAGTTTCccatgatcatcatcatcatcatcatttttcCCCTGCCCCCGGTTAGTTTTGCTAGTGTATCtgtaaattgtacattttcaaTCCGAAATGGTTTTCTTTTGTACAACCTAGAAATGTACCACTTTCCCTTTTAATGGAAAACTGTTCTAAAACTTTTCTTCAGTGAACTTATGGAAAACTcactttttcagaaaaaaaaaaaattaaatatgtaatcaTGAA

Function

symbol description
stag1a Predicted to enable chromatin binding activity. Predicted to be involved in sister chromatid cohesion. Predicted to be part of cohesin complex. Predicted to be active in chromatin and nucleus. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 47. Orthologous to human STAG1 (stromal antigen 1).
stag1 Predicted to enable chromatin binding activity. Involved in mitotic spindle assembly. Located in chromatin; mitotic spindle pole; and nuclear lumen. Part of cohesin complex. Implicated in autosomal dominant mental retardation 47.

NR:

description
PREDICTED: cohesin subunit SA-1

GO: NA

KEGG:

id description
K06671 STAG1_2, SCC3, IRR1; cohesin complex subunit SA-1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262822.1 True 6128 mRNA 0.48 35 11640359 11679922

Neighbor

gene id symbol gene type direction distance location
gyg1a LOC107709894,LOC107722604,LOC107688484,LOC107550614,LOC107680244,LOC107585020 coding upstream 34726 11598887 ~ 11605633 (+)
agtr1a LOC107584999,LOC107722527,LOC107688540,LOC107680245,LOC107550594,LOC107709880 coding upstream 41709 11593151 ~ 11598650 (+)
LOC122354667 NA coding upstream 52455 11585825 ~ 11587904 (+)
rab3aa rab3aa,LOC107585037,LOC107722633,LOC107688479,LOC107709895,LOC107550615 coding upstream 54649 11581166 ~ 11585710 (+)
pde4ca pde4ca,LOC107688476,LOC107680260,LOC107709896,LOC107722623,LOC107585054 coding upstream 59936 11541545 ~ 11580423 (+)
msl2a LOC107722612,LOC107688489,LOC107584967,LOC107709889,LOC107680240,LOC107550607,LOC107709890 coding downstream 5855 11685777 ~ 11690923 (+)
ppp2r3a ppp2r3a,LOC107722551,LOC107550604,LOC107732512,LOC107680219,LOC107584952 coding downstream 30262 11710184 ~ 11782407 (+)
fndc3ba fndc3ba,LOC107688494,LOC107584937,LOC107722494,LOC107732513,LOC107680249,LOC107550601 coding downstream 107770 11787692 ~ 11899378 (+)
tnika tnika,LOC107688496,LOC107722539,LOC107680235 coding downstream 266240 11946162 ~ 12024898 (+)
slc2a2 slc2a2,LOC107550598,LOC107680265,LOC107722632,LOC107586013 coding downstream 345354 12025276 ~ 12033082 (+)
G11207 LOC107688485,LOC107585026,LOC107550612,LOC107709892,LOC107722651 non-coding upstream 21496 11614241 ~ 11618863 (+)
LOC122328936 NA non-coding upstream 26793 11609251 ~ 11613566 (+)
G11191 NA non-coding upstream 183495 11456326 ~ 11456864 (+)
G11190 NA non-coding upstream 184951 11454258 ~ 11455408 (+)
G11189 NA non-coding upstream 186248 11453571 ~ 11454111 (+)
G11419 NA non-coding downstream 420953 12100875 ~ 12101126 (+)
G11505 NA non-coding downstream 657745 12337667 ~ 12339049 (+)
G11590 NA non-coding downstream 865431 12545353 ~ 12545592 (+)
G11593 NA non-coding downstream 934453 12614375 ~ 12614596 (+)
G11595 dsela,LOC107679326,LOC107584692,LOC107728919,LOC107714854,LOC107674195 non-coding downstream 936073 12615995 ~ 12621414 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 132655 11482104 ~ 11507704 (+)
rps28 NA other upstream 195788 11422090 ~ 11444571 (+)
mrpl34 LOC107688463,LOC107585198,LOC107722555,LOC107680228 other upstream 299248 11339735 ~ 11341111 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other upstream 301890 11303678 ~ 11338469 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other upstream 376125 11229760 ~ 11264234 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other downstream 228151 11908073 ~ 11937590 (+)
LOC122358236 NA other downstream 943901 12623823 ~ 12626387 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other downstream 1188007 12867929 ~ 12874008 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other downstream 2495442 14175364 ~ 14179615 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 3066185 14746107 ~ 14753161 (+)

Expression


Co-expression Network