pccb (pccb,LOC107688488,LOC107722577,LOC107709888,LOC107680238,LOC106574468)


Basic Information

Item Value
gene id pccb
gene name pccb,LOC107688488,LOC107722577,LOC107709888,LOC107680238,LOC106574468
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11679913 ~ 11685059 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262837.1
CCACAGAAATCCTGTGTCCTCGGTGTAGCAGTGATGGCGACCTACACGTTAATGCGAAGTAGCCTAGGACTTTTACACGGTctgaagtgttcctttaaaagtgTAGGTCAGATTCCGTACGCTGGGGCACTTACTCAGTCGAAAGCGCTGCAAAATGCAAGATGCTATTCGGTCAGCCATCTGTCAGTGCAGGAGAGAATCGACAAGAAACGAAAGGCTGCACTTGCAGGAGGAGGACAGCTGAGGATAGCTGCGCAGCACAAAAGGGGTAAACTGACAGCGCGCGAGAGAGTGGAGCTGCTGCTGGACCCTGAGTCGTTTGTGGAGTATGACATGTTTGTGGAGCATCGCTGTTCTGACTTTGGCATGGAAGCAGATCATAATAAGTACCCAGGAGACAGTGTGGTCACTGGACAGGGAAGGATCAATGGCAGACTGGTGTATGTTTTCAGCCAGGATTTCACAGTGTTTGGAGGCAGTTTGTCAGGAGCTCACGCTCAGAAGATCTGCAAGATCATGGACCAGGCAATGATGATGGGAGCTCCAGTAATCGGTCTCAATGACTCCGGTGGAGCCCGCATTCAGGAAGGAGTCGAGTCCCTCGCAGGATATGCTGACATTTTCTTGAGGAACGTGATGGCCTCAGGTGTAGTTCCTCAGATCTCCCTCATCATGGGCCCGTGTGCTGGCGGTGCCGTGTACTCTCCTGCTCTGACAGACTTCACGTTTATGGTGAAGGACACCTCCTATCTTTTTATCACGGGTCCAGACGTGGTAAAGTCTGTAACGAATGAGGACGTCAGCCAGGAGGAGCTGGGTGGAGCAAAAACCCACACCACTGTGTCAGgtGTTGCTCATAGGGCCTTTGAGAATGACATTGATGCCCTTCTGAACTTGCGAGACTTTTTTAACTTTCTCCCACTGAGCAACAAAGATGCAGCTCCGGTCACCGAGTGCCATGATCCTCGTGACCGGCTGGTTCCTGGTTTGGACACTATTGTTCCTTTCGAAAGCACAAAAGCTTATGACATGCTGGACATCGTTCATGGAATAGTAGATGAGAGGGAGTTCTTCGAGATTATGCCCAACTACGCCAAAAACATTGTGGTGGGATTTGCCAGGATGAATGGTCGGACAATAGGCATAGTGGGAAACCAGCCTAAAGTGGCATCTGGCTGTTTGGACATAAATTCATCCGTTAAAGGGGCTCGCTTTGTTCGTTTCTGTGACGCCTTCAACATTCCTATCATAACGTTTGTGGATGTGCCTGGATTTCTTCCAGGCACAGCTCAGGAGTACGGAGGCATCATCCGACACGGAGCCAAACTGCTCTATGCTTTTGCAGAGGCCACCGTTCCAAAAATTACTGTCATCACCAGGAAGGCGTACGGAGGTGCTTATGATGTGATGAGTTCTAAACATCTGAGAGGAGACGTCAACTACGCCTGGCCAAGTGCTGAGGTCGCAGTGATGGgagcaaagggtgCTGTTCAAATCATCTTCAGAGGAAAGGAGAATCAAGCGGAGGCTGAAGCAGAGTATGTGGAGAAGTTTGCCAATCCCTTCCCCGCTGCCGTCAGAGGCTTTGTGGATGACATCATTCAGCCCTCGACCACACGCAAGAGGATCTGTCGAGACCTCGAGGTGCTCGCCAGCAAGAAACAGACCAACCCCTGgaaaaaacatgctaacattCCCTTATAAAGCTCAACTCAACACTAGTTTCATAGCATTTCATGACGATATCTGTGACTAGACTGGAGAGGACATCGTGTTTTTCCCACACGGTTCGTTGTGCCTTACACCCCCCCCCGCTCATATGCATTACGCCACTGTTTCCCAAATCAATAAAACACTCCCACGGTTCAtgatta

Function

symbol description
pccb Predicted to enable ligase activity. Is expressed in several structures, including alar plate midbrain region; musculature system; optic tectum; optic vesicle; and pronephros. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and propionic acidemia. Orthologous to human PCCB (propionyl-CoA carboxylase subunit beta).

NR:

description
PREDICTED: propionyl-CoA carboxylase beta chain, mitochondrial

GO:

id name namespace
GO:0016874 ligase activity molecular_function

KEGG:

id description
K01966 PCCB, pccB; propionyl-CoA carboxylase beta chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262837.1 True 1874 mRNA 0.50 15 11679913 11685059

Neighbor

gene id symbol gene type direction distance location
slc35g2a slc35g2a,LOC107709891,LOC107550608,LOC107680231,LOC107586575,LOC107688541,LOC107722521 coding downstream 48113 11628145 ~ 11631800 (-)
nck1a nck1a,LOC107688485,LOC107585026,LOC107722651,LOC107709892,LOC107550612,LOC107680266 coding downstream 55809 11615823 ~ 11624104 (-)
LOC122361755 NA coding downstream 203742 11475621 ~ 11476171 (-)
crtc1a NA coding downstream 212417 11458451 ~ 11467496 (-)
si:rp71-39b20.4 si:rp71-39b20.4,LOC107585115,LOC107722566,LOC107688468,LOC107589795,LOC103032005 coding downstream 259179 11417942 ~ 11420734 (-)
nceh1a nceh1a,LOC107709885,LOC107722613,LOC107688490,LOC107584973,LOC107550609,LOC107680241 coding upstream 6492 11691551 ~ 11694478 (-)
ghsra LOC107586567,LOC107722546,LOC107688542,LOC107732507,LOC107550603,LOC107680230 coding upstream 216021 11901080 ~ 11903958 (-)
cldn11a cldn11a,LOC107586547,LOC107732506,LOC107550596 coding upstream 407306 12092365 ~ 12094581 (-)
rabggtb rabggtb,LOC107584851,LOC107732517,LOC107576861 coding upstream 576857 12261916 ~ 12266122 (-)
acadm acadm,LOC107688505,LOC107584839,LOC107674066,LOC107602542 coding upstream 582026 12267085 ~ 12270472 (-)
LOC122361822 NA non-coding downstream 26061 11650743 ~ 11653852 (-)
G11231 LOC107584999,LOC107722527,LOC107688540,LOC107680245,LOC107550594,LOC107709880 non-coding downstream 78934 11596111 ~ 11600979 (-)
G11321 NA non-coding downstream 91828 11587115 ~ 11588085 (-)
G11316 NA non-coding downstream 103639 11575574 ~ 11576274 (-)
G11315 NA non-coding downstream 104636 11574382 ~ 11575277 (-)
G11350 NA non-coding upstream 95052 11780111 ~ 11782401 (-)
G11366 NA non-coding upstream 131961 11817020 ~ 11819799 (-)
G11425 slc2a2,LOC107586013,LOC107722632,LOC107680265,LOC107550598 non-coding upstream 258074 11943133 ~ 12033080 (-)
G11426 NA non-coding upstream 343076 12028135 ~ 12031725 (-)
G11429 NA non-coding upstream 349950 12035009 ~ 12036429 (-)
hltf hltf,LOC107688483,LOC107722619 other downstream 64975 11592441 ~ 11614938 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other downstream 102397 11576391 ~ 11577516 (-)
crsp7 crsp7,LOC107722610,LOC107688472,LOC107550620,LOC107709903,LOC107585090,LOC107680253 other downstream 226710 11447089 ~ 11453203 (-)
cnn2 cnn2,LOC107585101,LOC107688471,LOC107709904,LOC107550622,LOC107680261 other downstream 234800 11440990 ~ 11445113 (-)
kcnn1a LOC107722564,LOC107585128,LOC107718068,LOC107680246,LOC107589798 other downstream 274213 11379243 ~ 11405700 (-)
xkr4 xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249 other upstream 1104465 12789524 ~ 12838093 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other upstream 1630170 13315229 ~ 13470263 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other upstream 1868714 13553773 ~ 13564365 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other upstream 2893936 14578995 ~ 14610266 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other upstream 3435528 15120587 ~ 15127491 (-)

Expression


Co-expression Network