elovl1a (elovl1a,LOC107553254,LOC107732201,LOC107700551,LOC107710545,LOC108438881,LOC103047025)


Basic Information

Item Value
gene id elovl1a
gene name elovl1a,LOC107553254,LOC107732201,LOC107700551,LOC107710545,LOC108438881,LOC103047025
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8373238 ~ 8382443 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263841.1
TTAGAATGAGCTGCTGCTCAGGTTTATATTGGGCTGGGAGCACGGCCTGTCACTGCCTTGGCAAAACTCCCACTGGAATACATTCCTCCTTACTCTATCACTCAGTTCACTGGTGAAAAGTGCTGCGCTTGAGGGCCACTGAAAGAAAGGATAAGGACACCAAAGTTCAGAGACTGTTTCCACTGCTTCCCTGGGTCTCTCATCCGTTTACTTGCCCCTGTGGGGcagtattattttcatttgttttttatttatttatttatttttagcttggGTGACTGAATCAACGGAAAGACAACAGTTTATTGGttgtctgaagaaaaaaagacaagatgTTTCAAGAGGTGCTTTCAAACATCTGGAAGTTCTACGACTATCTCCTGAAAAGAACTGATGCCAGGGTGCGGGATTATCCGTTGATGCAGAGTCCCATTCAGATGACATTCATCTTGCTGGGATACGTGATCTTCGTCTTATATGTGGGACCACGATACATGGCCAATCGTAAACCTTTCCACCTCAACACAGCTATGATTGTCTATAATTTCTCAATGGTGGCCTTCAACGCCTACATTGTTTATGAGTTCCTGATGTCTGGCTGGGGAACAACGTACACTTGGAGATGCGACCTCTGTGACCCCTCCAACAGTCCTGAAGCTCTTAGAATGGTTCGGGCAGCCTGGTTGTTCTACTTTTCCAAATATATTGAACTTCTAGATACGGTGTTTTTTGTGTTGAGAAAGAAGCACAGTCAGGTGACGTTCCTGCATATCTTTCATCATTCTGTCTTACCCTGGACCTGGTGGTGGGGCATCACTCTTACTCCCGCGGGTGGCATGGGATCTTTTCATGCTATGGTGAACGCATGTGTCCATGTCATCATGTACACCTACTATGGTCTGGCAGCTGCAGGGCCCAGCTTCCAGAAGTATCTGTGGTGGAAAAAGTACATGACAGCGATCCAACTGgTTCAGTTTGTGCTGGTGACTGTCCATATCTCTCAGTATTACATCATGGAAAAGTGTGAATACCAAGTTCCCATCTTCATTCATCTCATCTTGATCTATGGCACTTTTTTCTTCATCCTGTTCTCCAACTTCTGGATCCAGGCCTACATAAAGGGAAAGCGACTGCCTGTTTCCACTAAGGACAAACCCAAACAGAACGGCATAACCACTGTGAATGAGCCAGTGGTAGTCGCCAATGGCAAACACTTGGAAAACGGCACTGCGCACTACACTAATGGACTTGCCCACAACGGGAAAGTGAAGGAGGTCTAAATGGGCCAATCAGAAATATCAGAGACATTTTTGTTAGAAtatttgtcaaattaaatttttttttacgattgCATGGGAGATGAAACGGCACATTGGATCTGGCGGTGGGCCCCCCTTTCTTAGTATTTATAGATGTTGGAGGCTGGGGAGCACTGTGCATGAAGAGAATTCGTCCACTGAAGTCGTTGACGTCACTCTGAAACCTGACATCATGTCTGTGGTTTAATCCGCTTGACCTTGGCTTTTTTCCTGGCATATGAGTCTCCCAGTTGTTTGCACACTGTACAGTTTAACTGTAAGTCTAACTCACACttgactgtaaataaatgttttctcacggtttattagaaatgta
>XM_043263850.1
ATCTTTATAGATGCCCTGATATCAactaaacgaataaataaaaagaaaagaaaggtcTCAAAACGTAGCAGATACAAAAATCCAGACCTTCCGGACGCGCAGAGCGTTTCCTGCGTCATGACGCACGATTGACCAGTTTATTGGttgtctgaagaaaaaaagacaagatgTTTCAAGAGGTGCTTTCAAACATCTGGAAGTTCTACGACTATCTCCTGAAAAGAACTGATGCCAGGGTGCGGGATTATCCGTTGATGCAGAGTCCCATTCAGATGACATTCATCTTGCTGGGATACGTGATCTTCGTCTTATATGTGGGACCACGATACATGGCCAATCGTAAACCTTTCCACCTCAACACAGCTATGATTGTCTATAATTTCTCAATGGTGGCCTTCAACGCCTACATTGTTTATGAGTTCCTGATGTCTGGCTGGGGAACAACGTACACTTGGAGATGCGACCTCTGTGACCCCTCCAACAGTCCTGAAGCTCTTAGAATGGTTCGGGCAGCCTGGTTGTTCTACTTTTCCAAATATATTGAACTTCTAGATACGGTGTTTTTTGTGTTGAGAAAGAAGCACAGTCAGGTGACGTTCCTGCATATCTTTCATCATTCTGTCTTACCCTGGACCTGGTGGTGGGGCATCACTCTTACTCCCGCGGGTGGCATGGGATCTTTTCATGCTATGGTGAACGCATGTGTCCATGTCATCATGTACACCTACTATGGTCTGGCAGCTGCAGGGCCCAGCTTCCAGAAGTATCTGTGGTGGAAAAAGTACATGACAGCGATCCAACTGgTTCAGTTTGTGCTGGTGACTGTCCATATCTCTCAGTATTACATCATGGAAAAGTGTGAATACCAAGTTCCCATCTTCATTCATCTCATCTTGATCTATGGCACTTTTTTCTTCATCCTGTTCTCCAACTTCTGGATCCAGGCCTACATAAAGGGAAAGCGACTGCCTGTTTCCACTAAGGACAAACCCAAACAGAACGGCATAACCACTGTGAATGAGCCAGTGGTAGTCGCCAATGGCAAACACTTGGAAAACGGCACTGCGCACTACACTAATGGACTTGCCCACAACGGGAAAGTGAAGGAGGTCTAAATGGGCCAATCAGAAATATCAGAGACATTTTTGTTAGAAtatttgtcaaattaaatttttttttacgattgCATGGGAGATGAAACGGCACATTGGATCTGGCGGTGGGCCCCCCTTTCTTAGTATTTATAGATGTTGGAGGCTGGGGAGCACTGTGCATGAAGAGAATTCGTCCACTGAAGTCGTTGACGTCACTCTGAAACCTGACATCATGTCTGTGGTTTAATCCGCTTGACCTTGGCTTTTTTCCTGGCATATGAGTCTCCCAGTTGTTTGCACACTGTACAGTTTAACTGTAAGTCTAACTCACACttgactgtaaataaatgttttctcacggtttattagaaatgta

Function

symbol description
elovl1a Predicted to enable fatty acid elongase activity. Acts upstream of or within swim bladder development. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in several structures, including EVL; artery; pharynx; swim bladder; and swim bladder bud. Orthologous to human ELOVL1 (ELOVL fatty acid elongase 1).

NR:

description
elongation of very long chain fatty acids protein 1-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263841.1 True 1635 mRNA 0.44 8 8377292 8382443
XM_043263850.1 False 1470 mRNA 0.44 8 8373238 8382443

Neighbor

gene id symbol gene type direction distance location
glula LOC107563291,LOC107710552,LOC107700548,LOC107732203,LOC107553252 coding upstream 54771 8315131 ~ 8318467 (+)
ptger4c ptger4c,LOC107716941,LOC107700513,LOC107743379,LOC107684935,LOC107564388,LOC107551710 coding upstream 982203 7388418 ~ 7391035 (+)
dmbx1a dmbx1a,LOC107588924,LOC107743378,LOC107700538,LOC107551711,LOC107684938,LOC108442545 coding upstream 1026583 7340271 ~ 7346655 (+)
wls wls,LOC107684934 coding upstream 1089428 7269715 ~ 7283810 (+)
scinlb LOC107588891,LOC107700536,LOC107658127,LOC107568091,LOC107743367,LOC108280481,LOC106568976 coding upstream 1104833 7257164 ~ 7268405 (+)
cc2d1b LOC107563292,LOC107710553,LOC107700553,LOC107677533 coding downstream 4434 8386877 ~ 8403214 (+)
clcn2a clcn2,clcn2a,LOC107732945,LOC107710554,LOC107677884 coding downstream 57436 8439879 ~ 8486904 (+)
atp1b3a atp1b3a,LOC107700561,LOC107563307,LOC107710617,LOC107732952,LOC107677716,LOC107553263 coding downstream 207798 8590241 ~ 8599595 (+)
atr atr,LOC107677746,LOC107700496 coding downstream 247969 8630412 ~ 8651546 (+)
amer3 LOC107710619,LOC107700565,LOC107677756,LOC107732953,LOC107553265,LOC107569737 coding downstream 269474 8651917 ~ 8662323 (+)
G10219 pbx1a,pbx1b,LOC107677498,LOC108272157,LOC107564502 non-coding upstream 110408 8219265 ~ 8262830 (+)
G10198 NA non-coding upstream 282702 8081817 ~ 8090536 (+)
G10200 NA non-coding upstream 283767 8083536 ~ 8089471 (+)
LOC122326720 NA non-coding upstream 342131 8027750 ~ 8031107 (+)
G10188 NA non-coding upstream 417032 7955793 ~ 7956206 (+)
G10226 NA non-coding downstream 139959 8522402 ~ 8528707 (+)
G10271 NA non-coding downstream 177655 8560098 ~ 8561513 (+)
G10284 LOC107710615 non-coding downstream 204934 8587377 ~ 8589074 (+)
LOC122356731 NA non-coding downstream 380396 8762839 ~ 8765451 (+)
G10371 NA non-coding downstream 416148 8798591 ~ 8798996 (+)
G10212 NA other upstream 265461 8106865 ~ 8107777 (+)
G10108 NA other upstream 790853 7504622 ~ 7582385 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other upstream 1073137 7285670 ~ 7300101 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 1267446 7098303 ~ 7105792 (+)
G9925 LOC107563058,LOC107549254 other upstream 1386119 6986298 ~ 6987119 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other downstream 780168 9162611 ~ 9171915 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 1364127 9746570 ~ 9751212 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other downstream 1529185 9911628 ~ 9916861 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other downstream 1776089 10158532 ~ 10161809 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 2280286 10662729 ~ 10665110 (+)

Expression


Co-expression Network