gpc1b (gpc1b,LOC107660106,LOC107749182,LOC107730456,LOC107549820,LOC107600088,LOC107671591)


Basic Information

Item Value
gene id gpc1b
gene name gpc1b,LOC107660106,LOC107749182,LOC107730456,LOC107549820,LOC107600088,LOC107671591
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22044868 ~ 22105101 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263870.1
CCTGCAGATGGTGCcttcgctcgctcgctcgctcgcgcGCCCGCCCCGCTCCGCCTCGCACTCGCCCGAGCGCGAGCGCACCGACGCGTCTCCGAAGTGTGCGCTCCCGTGAGCTCATGTCATTCCTCCCTCTCCGCTCCgtcatctctcacacacaggaTTGCGCTCTCCGTTTTAATTCAGGCTGCCGCCACTGAATAAGACACTGCGCGTGGGAGCAAACCGGTGCGCTTTTTGGAAACGGGAGGCTTCGCTTTGGACGCGTTTATCCGCTGCTCTTCGCCCTTGGATTTGATTCGCACACCACACTTCTTTCTTCTGTCCAGAATGGGTTTTGTCGTGCCGGTGCTTCTGTGCGCTCTCGCCGGGCTGGTGTTCGGGGACAGTAAACCCAAGACATGCTCGGACATCAGGCACTTCTACAACAACAATGGGTTCAATCTGAACGGAGTCCCGCAAACAGTAATATCTGGTGAGCACCTGCGGGTTTGTTCTCAGGGTTACACCTGCTGCACGTCTGGGATGGAGGAGAACCTTCTGAACCTGAGCCGACGAGAGATTGAGACTCAGGTGAAGGAGTCTGGACGTACCTTACAGGCCTCTCTCAACGGCCAGTATAAGAGCTTCGACGatTATTTCTTGGAGCTATTGAATCGTTCTGAAGCATCGCTCCAAACCTCTTTCCAGACTGGGTTTGGACCTCTCTTCTCCCAAATCGCGAAGGTGTTTCAGGATCTGTACTCAGACCTTCGGCGCTACTACCGAGGGTCCAACGTCAATCTCGAAGAGGCGCTGAACGAATTCTGGGCCCGTCTGCTGGAAAGACTCTTTAAAGCTTTAAACCCTCAGTACATTATTGGAGAGGAGTATCTGGAGTGCGTAGCCAAGCAGTCAGAAAGTCAGAAGCCGTTTGGAGACACGCCGAGAGAGCTCAAGACCAAAGTCACACGCACGGTTATCGCTGCCAGAACGTTTGCGCAGGGTCTGGTGATCAGCGGCGAAGCGGTCAGGAAGGTTTCACAGGTGTCTCTGAGCACTGAATGTGTGCACTCCGTCATGAAGATGGCATACTGTCCTCACTGTAGTGGTGTGGCTTTGGCCAAGCCCTGCCCAAACTACTGTAAGAATGTCATGAAGGGCTGCCTCGCCAATCAAGCAGACCTGGACTCTGAGTGGAGGAACTTAGCAGaTGCTATGCTGGAAGTAGTTGACAAACTGAGCCGGCCTTACAGTGTGGATTCGGTGGTTCTATCTTTGCCAAAACGCATTGCTGAAGCGATTCTCTACATGCAAGACAACCTCAACACGTTCAACAATAAGgtgtTTCAGGCATGTGGTTCTCCTACTCAGACCTCCAAAACTGAGGATCAGATCAAACGAGGTAGAAATACAGCAGAAGAAGTGAGCGGCACCCCAGGAGCCCAACTGGAGAAAGTGTTATCCGATGTGTCCAGAATGTTGAGGGATATCATGCAGTACTGGGTCCATTTGCCCAGAAAACTGTGTGTGGATCGCGAGTCTGCACCGAGTGAAGCAGACAGATGTTGGAACGGAATGAGCGTGGACAGGTATCTGCCAGAAGTGATGGGAGACGGACTGGCCAGTCAGATCAATAATCCTGAGGTGGAGATTGACATTACCAAACCAGACATGACTGTACGCAAACAGATCATGCAGCTTAAGATAATGATCAACCGACTGAAGTACGCCATCAATGGAAATGATGTGGACTTCCAGGACACCAGTGATGATATCAGCGGCTCAGGAAGTGGAATGTGTGCCGACGATCAGTGTTCCCGTGATCCACGTTTAACGGCCTCAAACGTGGACAAACCCAATGTATACGCCTATCCGTCAGAGAACAAGAAGGTGGTGAACGGAAGAAGCAGCCAGAACCTTCCTTGCGTCAGCCTCTACCTTCTCTCATTGGTCACAGTCTTGCTTAGGCGATAATTGGCAGGCAATTCCACCAACTGGGACTGAGTACAGGACTGGGTTGGATTGTGGAGGGGCGGGGTTAGTCACTTTgccaaaacaaacatgcaaacatCAACCGAAACCGGCGAATGCATCACTTTTTTGTCTTGAATAAGAACACCATGGAATATTCTTAGATCTGTGTACTTTTTTTCGTCTCTTATTTGATATATGACACCCCTAGAGCTGGTCTTTTTGCTTGTCTTTATGTCTGTGGTGAAAAAGGTCTCCGAGAATGCGCCAATCTCTAACGATAGCTATGAAAATCCACcccaacaaacaaaacatgctgGTTTTTCcttattcagaaatcattttaggttatatttatttattaattgagaCCCATAAAGATAAGACGTCTCTGGCCATTCAAGCTAGGGAATCTCCGTCAACATTCGATCAAAGTGAAGAAACTGAAAGAACCCCGTGTTCTTCTTATCTTTGTTTTAAAGCCTCTCTAATCatgaaaacaagctttttttgaGTCTTGTTTCGTGAAGACCagctgtctctcgctctctctgtctaCTTCTCTCTCTCGTTTATTGTACTAGTTTCCGCACTCTGCTTTGCAAATGGGTTTCAGGGgccattttaaagaaaacacaacatGTATTTACTCTGGATGTAAATAAACGTGTACTAACCACAGTCACATTTTCAGTATATCCTTGAGGACCCTCAACAGCACTAGAGCAATATTTGGGATATAACGTTAATGCACCAGCAATGAGAAAGAGACGGCAGCGTTTTATGAAACGATGTGGGACAGATAATATAATGACCGTCATCTCAGAAAGGGATTTTGCACGTGGGAAAAGACAAGCCGGGAGAATGAGACTCGAAATGTGGAGGGGTTTCTGGACATTGTTAATTTGATATCGATTCAAACCTCGtagggatgtgtgtgtgtgtttgtgttatgtGTGAGTGCACTTCAGAGAAAGCGCTGCTTTGTAAGTACTCACTATACAAATATACACGTGTACTTGATACATGCTGCATCCACGTCAGATCTGATTAGTTCAGTGAGTCACAGATGTGCGTCTCAAATATTTCCCAGCCCTTCATTAGCAGACAAGTTGGATTGTTTATGGTACGCACATGTGGATGTGAAACGGTGTTGCGTAAATTTTACCAACAAAATGCTGTCGGTTTTAGATGACAATTGCACTCTATGCAAGTATGTAAACGCAAATAATATAAGCATGCGTACTAATATTTTGTGTCTATGTCGCGATAGCACAACTTCCTCAAGGGGGCAACCATCAAATGTTTGCAATATTGAATCTAATTTGCTGTAGCTATAAACATGCTAATTGTTGGACTAGCTTGCGAAGCTAAACAGCATGCATTCCTCTCATATTTGTGTTACATTATGAAATACACCTAATTTCCAACATCCCCATGACCTTACACTGTAAAAGTGGTTTGGAGAATCGATTGGAAGGTTGAAATAATGTAAGCGCGCGTACTAATGTGCATTTTAGCGTTATGTAACGATAACGCAACTTAGCACGTCAACGAGGTGATCGAGTTAACATCAAAAGTTTGCATCATTAAATCAAATGTTGTTGTTTAGGTAGATATAGCTGTAAACGTGTTCGCCGTTGGACTAACTTGAACTAGCTTGCTAAGCTAAATTCATTTGTTCAAATGTAATTCGTGCTTGTAACTGTCGATAGGTAAAATGTTTGCTAAAACTTACCCGATACCCTCAATAGTGCACCTTTCATACTCATGTTACATTATAAACACTGAAGCTAATTTCCAGCATTCCCGGTGACCCTAGAGTGGATACGAGTTTGGAGAATGGACGGATTTAGGCTCGTTTCACAACGCAGTGTAAAATCAAGCATTTGCGTTCTCTTACTTGCATAGAGTTTCAGACCtaggagagagaaaagagcTTAATTTgttgctctttttaaaaaaacgtagcATTTGTAGGGAAGTGGTGTAACGGATTATGGTTGCCATTGGCTTTGCAGAGAAAGTGCTGCAGTTTCGGTCACTATAAGTGGCGTACAGATCTGACCTGGTCTTCGAAATGGAGAACAACATCCCCTCCTTGCACTTTGCATGACGCACGCGGCAACGTCCGCATGACTACATCACATGATCAGTGGTTGATAACAGAGAAATATCCCACAGGCGGTGTTATGGATTGTTTGTTGATCGACTGGATCAGATGTGGTTGAAAAAACAGACCCGTGGCACAATTCACTAACTATCTGTAGAGCGATCTGACCTGAGTCTTAACTGTCTTTAGCATGTTTGTCAAATCATTGACAGTTAGTAGTCTGACCCCAGGTCAGCTTAACAGTCCCACTTCTAGGTGCAATGGTGTAACGGTGAAACTGTCACTGGCTCTTTACTGATGAATGTGGCTGATATTGTCAAAATGTACTGAgatgaaaaaatttaattgcattctggtatatactttattatttttgtttgtttgtttaaaaaaaacaaaaacaataatggGGAGTTTGTGTTTAAGGTCGAAAGTAGAACATTTTGAAGAGACTGAGGAAATTATCTGTCCATTGTTGTTGtatgttctttaaaaagaaagagaaaatccCTTGTGTCAATTATAgatcaaaagattttgaaaa

Function

symbol description
gpc1b Predicted to enable fibroblast growth factor binding activity. Predicted to be involved in cell migration; negative regulation of fibroblast growth factor receptor signaling pathway; and regulation of protein localization to membrane. Predicted to act upstream of or within regulation of signal transduction. Predicted to be located in collagen-containing extracellular matrix; extracellular space; and membrane. Predicted to be anchored component of plasma membrane. Predicted to be active in cell surface and synapse. Is expressed in several structures, including ectoderm; epidermis; nervous system; pharyngeal arch; and ventral mesenchyme. Orthologous to human GPC1 (glypican 1).

NR:

description
PREDICTED: glypican-1-like isoform X1

GO:

id name namespace
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043395 heparan sulfate proteoglycan binding molecular_function

KEGG:

id description
K08107 GPC1; glypican 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263870.1 True 4607 mRNA 0.45 9 22044868 22105101

Neighbor

gene id symbol gene type direction distance location
gpc5c gpc5c,LOC107749179,LOC107660087,LOC107671592,LOC107730460 coding upstream 18781 21929297 ~ 22026087 (+)
trnam-cau_1 NA coding upstream 116049 21928747 ~ 21928819 (+)
fndc7rs1 NA coding upstream 133199 21896676 ~ 21911669 (+)
nlrp1 NA coding upstream 217636 21818882 ~ 21827232 (+)
LOC122358999 NA coding upstream 225706 21815200 ~ 21819162 (+)
LOC122324242 ephb1,LOC107549839,LOC107671589,LOC108430182,LOC106599529,LOC103359190 coding downstream 29253 22134354 ~ 22326172 (+)
epb41l3b epb41l3b,epb41l3,LOC107689342,LOC107729731,LOC107750217,LOC108427206 coding downstream 410304 22515405 ~ 22549867 (+)
LOC122357060 NA coding downstream 457411 22562512 ~ 22572000 (+)
LOC122323627 NA coding downstream 487498 22592599 ~ 22601454 (+)
foxl2b LOC107574316,LOC107730743,LOC107683772,LOC107750224,LOC107549802,LOC107684570 coding downstream 533785 22638886 ~ 22640594 (+)
G14484 LOC107568745 non-coding upstream 129840 21913520 ~ 21915028 (+)
G14477 NA non-coding upstream 149390 21895171 ~ 21895478 (+)
G14476 NA non-coding upstream 149737 21894608 ~ 21895131 (+)
LOC122359002 NA non-coding upstream 231965 21810929 ~ 21812903 (+)
G14316 NA non-coding upstream 324293 21719918 ~ 21720575 (+)
G14532 NA non-coding downstream 362759 22467860 ~ 22472603 (+)
G14535 NA non-coding downstream 370680 22475781 ~ 22476202 (+)
G14540 NA non-coding downstream 407070 22512171 ~ 22513937 (+)
G14541 NA non-coding downstream 417310 22522411 ~ 22586250 (+)
G14542 NA non-coding downstream 471922 22577023 ~ 22578223 (+)
fndc7a fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736 other upstream 177469 21857212 ~ 21867399 (+)
G14471 NA other upstream 183426 21860891 ~ 21861442 (+)
LOC122327294 aknad1,LOC107749213,LOC107660326,LOC107730428,LOC107671582 other upstream 191861 21843575 ~ 21853007 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other upstream 328578 21714683 ~ 21716290 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other upstream 423771 21533245 ~ 21621097 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other downstream 356815 22461916 ~ 22485655 (+)
LOC122327931 NA other downstream 528428 22633529 ~ 22674275 (+)
fcer1gl LOC107671799 other downstream 586098 22691199 ~ 22695330 (+)
LOC122324535 NA other downstream 898064 23003165 ~ 23005254 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other downstream 1440005 23545106 ~ 23547974 (+)

Expression


Co-expression Network