lamc1 (lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC107722047)


Basic Information

Item Value
gene id lamc1
gene name lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC107722047
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16625845 ~ 16670329 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264338.1
GCGGTCCATCAAAGCATCCTTCAGGCGGAAGTAGACGTAGGGATTTTTTTTGGAAGTACTTTGACTTGCGCACTAGCTGCCAGGGTGTAGTCGGATATAGTTCCTTTTctccaaaactttttttttccatggcgGTGGTTACAAAGCAGTAATAAAGTGAAGGTTTGCAAGAGAGAAGTCGCGGGGAGATTAAGCCACAACTATCGCTTTTTGGAGGTGAAGCGACTACCACCATTTTCCGCatgagtttatttataaaaccgCAAACTCGGTAGCTGGCGAGTTACCGCAAACTTTTTTAAAGACTGCGAGGATTTAAGGGATCGAGACAGTGAGGGTAGCTACTTGAGGTCGCATAAACAAAAGGACACAATGTCGTTTTTTAGCTGTTTGTTATTATGGACTTTGTGGGCAGCGTGCAGTCACGGAGCGATGGATGAATGTATAGACGAGTCCAATCGGCCTCAGCGCTGCATGCCAGAGTTTGTTAACGCCGCTTTCAATGTAACCGTAGTGGCCACCAACACTTGCGGCTCGCCGCCTGAAGAATACTGTGTACAGACCGGGGTAACGGGAGTCACTAAATCATGCCACATTTGCGACGCCGGAGACCCCAGGCACCACCACGGCGCTGTTTATCTCACCGATTACAACAACCAAGCGGATACCACCTGGTGGCAAAGTCAGACTATGTTAGCGGGCATCCAGTACCCAAACTCCATCAACCTGACTCTTCACCTGGGCAAAGCTTTCGACATCACTTATGTGCGTCTGAAGTTTCACACGAGCCGTCCTGAGAGCTTTGCCATCTACAAGCGCACTAGTGAAGATGGGCCCTGGACCCCCTACCAGTACTACAGCGGCTCCTGCGAGAAGACCTACAGCAAGATCAACCGTGGCTTCATCCGCACTGGTGAAGACGAGCAGCAGGCTCTTTGCACAGATGAGTTTAGCGACATCTCACCGCTCACCGGAGGAAACGTGGCCTTCTCCACGCTCGAGGGCCGACCCAGCGCATATAACTTTGACAACAGCCCAGTGCTGCAGGATTGGGTGACTGCCACGGACATCAGAGTGACCCTGAACAGATTGAACACTTTCGGAGATGAAGTTTTCAACGATCCCAAAGTTCTCAAATCCTACTACTACGCTATCTCTGACTTCGCTGTGGGAGGAAGGTGCAAGTGTAACGGCCATGCCAGCGAGTGTGTGAAGAACGAGCGCAGCAAAATGGTGTGTAACTGCAAACATAACACAGAGGGACCAGATTGCAACGTGTGCAAGCCTTTCTACAATGACCGTCCCTGGAGGAGAGCCACCGCCGACAACCCCAACGAGTGTCTGCCTTGTAAGTGCAATGGAAAGAGCGGCGAATGTTACTTCGATCCTGAGCTGTATCGTGCCACTGGTCACGGAGGTCACTGCCGCAACTGTGCAGACAATACAGATGGGCCGAACTGTGAGCGATGCCTGGATAACTACTTCAGAGACCCCTCCGGCCAGCGCTGTCACTCCTGCAGCTGCAACCCTGTTGGTTCTCTCAGTACCCAGTGTGACAACACTGGCAGATGTAGCTGTAAGCCAGGAGTGATGGGAGATAAGTGTGACAGATGCCAGCCTGGGTACCACACACTGACTGCTGCAGGCTGCAGACCCTGCTCTTGCAATCCAGCCGGAAGCACCCAGGAGTGTGATGTCCAGACCGGACGCTGCCAGTGCAAGGAAAATGTGGATGGATTCAACTGTGACAGGTGTAAACTGGGCTTCTTTAATCTGGACCCCCAGAATCCTCAGGGATGTACTCCATGCTTCTGCTTCCAGCATTCCACTGTGTGCGAAAGTGCTGATGGCTACCACATACACAAAATCACCTCCACCTTCGACAGGGATGAAGAGGGCTGGAAGGGACAGCAGAGAGATGGCTCTAGCGTTCCAGTGCAGTGGTCGCCCACCACTCAAGAGATCTCACTCATCTCAGAAGACTACTTCCCCATCTATTTTGTGGCTACAGAGAAATTTCTTGGTAATCAGCTGCTGAGCTATGGTCAGAACCTCACGTTGAACTTCAGGATTCAGAGACATGATGCTCGGCTTTCAGCGGAGGACATCGTGCTGGAAGGGGCCGGGCATCGCGTCGCTGTCCCACTTATTGCCCAGGGCAATTCCTACCCAGGAGAGGAGACACAAACCTTTGTGTTTAGACTCCATGACACGACTGACTATCCTTGGAGACCCACCATGAAACACGCCGACTTCCAGAAACTTCTGTACAATCTGACTTCGATTATGATTCGTGGAACCTACAGTTCAAGAAGTGCTGGTTATTTAGACAACGTGTCCCTGGTGACTGCCCGCCGTGGCCCTGGAACTCCGGCTCGTTGGGTTGAGAAGTGTACGTGTCCTCAGGGTTACTTGGGGCAGCATTGTGAGCAGTGCGATCTGGGATATAGGAGAAGCCAACCTCAGCTGGGCCGCTTTAGCAGTTGCGAGCCCTGCAACTGCAACGGACACAGCGACACTTGCGACCCTGTGACAGGAATGTGTAACTGCCAGCACAACACCGCCGGCATGAGCTGTGAGAGGTGTAAAGACGGGTTCTATGGTGACTCTACAGAGGGCACATCTTCAGACTGTAAACCCTGCCCCTGCCCCGCCGGTGCCACGTGTGCCGTGGTGCCCAAGACCAAAGAGGTGGTCTGTACAAACTGCCCAACTGGAACAACAGGTAAGAGGTGTGAACTATGTGATGATGGCTTCTTCGGGGACCCTCTTGGTGAAAACGGTCCAGTCAGGGCATGCCGTGCCTGCAGCTGTAATAACAACATCGACCCCAATGCTGTGGGCAACTGTAACCGAGAGACGGGCGAGTGCCTCAAGTGCATTTACAACACCGCCGGCAGCTTCTGCGATCGTTGCAAAGAGGGTTTCTACGGCGATGCACGTGCCGCAAATGTAGCTGACAAATGCAAACCATGCTCGTGCTCTCCGTACGGGACAGTGGACAGGAAGACAACTTGCTCCCAGGTGACGGGGCAGTGCCAGTGTCTTCCCCACATCATTAACAGAGACTGCAGTGCGTGTGAGCCCGGTTTCTACAACCTACAGAGCGGCAAAGGCTGTGAACgATGCAACTGCAACGCTATTGGCTCCACAAACGGCCAGTGTGATATCGTTAGCGGCCAATGCGAGTGTCAGCCTGGGGTCACAGGTCAACACTGCGAGCGCTGTGAGGTCAACTCCTTTGGATTCAGTTTGTCGGGTTGCAAACCTTGTGACTGTGACCCGGAAGGCTCGGAGTCTGCTCAGTGCAAGGAAGACGGGCGTTGTCAATGTCTCCCAGGTTTTGTGGGAGCTCGCTGTGACATGTGTGAGGAGAACTACTTCTACAATCGCTCCACACCAGGATGCCAGCAGTGTCCCAACTGCTACAGTCTGGTCAGGGACAAGgTGAACCAGCAGAGACAAAAGCTTCATGACCTACAGAATTTGATTGAAAATCTGGACAACACTGAGAATACAGTGAGTGACAAGGCCTTCGAGGACAGACTGAAGGAGGCAGAGAAAACAATAATGGACTTGCTGCAAGAGGCTCAGGCTAGCAAAGAAGTGGATAAAGGCCTTTTGGACCGTCTAAACAACATCAACAAGACCCTGAACAACCAGTGGAACCGACTGCAGAACATCAAGAACACCGTGGACAACACAGGAACGCAGGCAGATCGAGCACGTAACCGAGTCCGTGATGCAGAGAACCTGATCAGCACTGCTAGAGAGGAGCTGGATAAAGCCAAGGAGGCTATCAGTAAAGTGGACATTAAAATACCCACAACCTCTGGAGATCCAAACAATATGACACTTCTGGCAGAGGAAGCCCGCAAACTGTCCGAAAAACATAAAGCAGATGCAGATCAGATTGAAAGGATTGCGAAGGACGCCAATGACACATCCACTAAAGCCTATAATATGCTAAAGAAGGCGCTTGACGGCGAGAACAAAACAAGCAGCGACATTGATGAACTTAACAGGAAGTATGTTGAAGCCAAGGACCTGGCCAAGAACCTGGAGAAACAGGCTGCTAAAGTACATGCCGAAGCAGAAGAGGCAGGAAACAAAGCTCTGAAGATCTACGCTAACCTGACCAGCCTGCCCCCAATCGACACTAAAACATTAGAGGATGAGGCCAATAAGATAAAAAAGGAGGCGTCAGACCTGGACAAACTGATAGACAAGACTGAGAAGGAGTACAACGATCTGAGAGAGGACTTGAGGGGCAAAGAGACAGAAGTCCGCAAACTACTGGAAAAAGGAAAGACTGAGCAACAGacgGCTGATCAGTTGTTGGCACGTGCGGACGCAGCAAAGGCTTTGGCTGAAGAGGCAGCGTAAAAAGGAAAATCTACTTTCCAAGAGGCACAAGACATACTGAACAACCTCAGAgACTTTGACAAGAGAGTGAATGACAACAAAACTGCTGCTGAGGATGCCATGAGGCGAATCCCAGAAATCAATGCGACAATCAATGAAGCCAATGAGAAGACGCGGCGGGCCGAGGCAGCTTTAGGCAACGCCGCTTCTGATGC

Function

symbol description
lamc1 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within several processes, including animal organ development; detection of light stimulus involved in visual perception; and retinal ganglion cell axon guidance. Predicted to be located in extracellular region. Predicted to be active in basement membrane. Is expressed in several structures, including central nervous system; eye; median fin fold; musculature system; and optic cup. Orthologous to human LAMC1 (laminin subunit gamma 1).

NR:

description
laminin subunit gamma-1-like

GO:

id name namespace
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0007634 optokinetic behavior biological_process
GO:0007155 cell adhesion biological_process
GO:0005604 basement membrane cellular_component

KEGG:

id description
K05635 LAMC1; laminin, gamma 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264338.1 True 4580 mRNA 0.52 25 16625845 16670329

Neighbor

gene id symbol gene type direction distance location
dhx9 dhx9 coding upstream 2812 16613776 ~ 16623033 (+)
rasal2 rasal2,LOC107678931 coding upstream 13379 16561384 ~ 16612466 (+)
ankrd45 ankrd45,LOC107563586,LOC107658305,LOC107722043 coding upstream 78833 16545336 ~ 16547012 (+)
plk3 plk3,LOC107722069,LOC107563563,LOC107658359,LOC107726922,LOC107678927,LOC107557223 coding upstream 117947 16501052 ~ 16507898 (+)
LOC122355504 cacybp,LOC107722060,LOC107658360,LOC107678928,LOC107726916,LOC107559063,LOC107563589 coding upstream 126143 16497709 ~ 16499702 (+)
lamc2 LOC107722066,LOC107658364,LOC107563561,LOC107678924,LOC107726891 coding downstream 6810 16677139 ~ 16689372 (+)
smg7 LOC107563557,LOC107722067,LOC107658366,LOC107557277,LOC107678926 coding downstream 30748 16701077 ~ 16718102 (+)
LOC122361612 NA coding downstream 51799 16722128 ~ 16723558 (+)
LOC122356618 LOC107738189,LOC107684434,LOC107591326,LOC107559148,LOC107706401,LOC107659373 coding downstream 173392 16843721 ~ 16847555 (+)
ing5b ing5b,LOC107738258,LOC107706410,LOC107591443,LOC107557337,LOC107659430 coding downstream 324360 16994689 ~ 16996615 (+)
G12530 pappa2,LOC107568983,LOC107722077,LOC107558342,LOC107658303,LOC107678935,LOC107726923 non-coding upstream 360925 16263774 ~ 16264920 (+)
LOC122359940 LOC107743936,LOC101883431 non-coding upstream 590937 16032757 ~ 16034908 (+)
G12491 NA non-coding upstream 747441 15878134 ~ 15878404 (+)
G12451 NA non-coding upstream 814452 15810893 ~ 15811393 (+)
LOC122356092 NA non-coding upstream 883047 15731819 ~ 15742798 (+)
G12607 NA non-coding downstream 20597 16690926 ~ 16693619 (+)
G12669 NA non-coding downstream 113571 16783900 ~ 16784544 (+)
G12729 LOC107678904 non-coding downstream 156701 16827030 ~ 16829326 (+)
LOC122356672 NA non-coding downstream 159779 16830108 ~ 16839463 (+)
G12730 NA non-coding downstream 160320 16830649 ~ 16831883 (+)
LOC122323293 NA other upstream 169313 16450132 ~ 16456532 (+)
G12531 LOC107722077,LOC107568983 other upstream 357048 16267043 ~ 16268797 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other upstream 750081 15860179 ~ 15875764 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other upstream 1376596 15241797 ~ 15249249 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other upstream 1842868 14776322 ~ 14782977 (+)
LOC122361622 NA other downstream 54285 16724614 ~ 16776351 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other downstream 361810 17032139 ~ 17039903 (+)
sppl2 sppl2,LOC107738168,LOC107706381,LOC107591351,LOC107659410,LOC107668984 other downstream 691916 17362245 ~ 17369102 (+)
G13114 tep1,LOC107591368,LOC107706362,LOC107659385,LOC107738210,LOC107591364,LOC107738151 other downstream 896512 17566841 ~ 17567916 (+)
G13111 LOC107738210,LOC107591364 other downstream 936923 17607252 ~ 17608092 (+)

Expression


Co-expression Network