lrrc24 (lrrc24,LOC107713676,LOC107655866,LOC107600207,LOC107757831,LOC107599237,LOC107663504)


Basic Information

Item Value
gene id lrrc24
gene name lrrc24,LOC107713676,LOC107655866,LOC107600207,LOC107757831,LOC107599237,LOC107663504
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 25089791 ~ 25110776 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264704.1
gagagagagagagagagagagagagagagagagagagagagagagagagtcgaCTCAGCTGAGCTCACAGGGAGGAAGAGATTTGGAGAAAGCTTCTTAACCTATTTCAGAGGGGTACCAGACGTGATTTTGGTTGGTTAGACTCGCATAGGCAGGAGTCTCGCGCCCGACTGATATCGATTTGGTATTTTTGCGCGGGATGTGAGGAATATTCCAGCATCGCTGCTGTGAGGATGGCAGGACGGAGCGGTGGCCTTTCGGATCGCAGCTCAAATGCCGCTTTGTTCGCCGTCCAGACGTGGATTGATATTTCATTCATGTGCATCTGAATTCAGTCCGTATAAAGACCAGGAGCGCAGCTCTTCAGCACCGCACGCAGCACCGCGCCGAGTCCACGGTCTGGAGTTGTTTCTGAGATGAATCCTCCTCGGCTCTCGGCGGTGTTGGTGCTCACGCTGGCCCAGCTGTGCTCGTCTTCTGTCGGTTGTCCTTCTGGATGCCGCTGCTATAGCTTGACCGTCGAATGTGGATCCATCGGGCTCAAAGAGATCCCGCAAGGCATCGCGCACGGGACACAGACCATCTTTCTGCAGGACAATGCCATCGGACAGATCCGTCAGCGGGATCTATCTGACCTCGGCCAGCTGCACTACCTCTACCTGCAGAACAACAGCATCTCCACGCTGGAGCCCGGGGCCTTCAGGAACCTGGGCCTGCTTCTGGAGCTGGCGCTCAACGGAAACCGCATCCACCTGATCACAGCGGACGTGTTTCAGGGCCTGGACCACCTGCGCATCCTGTACCTCGCAGGAAACCAGATCACCAGACTCGAGGACTACACCTTCCGCGGACTGCAGCGGTTGCAGGAGCTGCATCTGCAGGAGAATGCGGTGGAGGTGCTGGGAGATCAAGCTCTGGTGGGTCTGTCCTCTCTGGCTCTTCTGGACCTGAGCAGAAACAACCTGAGAACCCTGAGTCCCGCTTCACTCAAACCCCTCGTCAGCCTGCAGGTGCTGAGGGTCACAGATAACCCGTGGCGCTGCGACTGCGCTCTGTACTGGCTGCGTGGCTGGATAAACGAAGAGGGTCAGAGGCTATTAAGCTCAGCCGAGCGGCGGATGTTGTGCGCCGAACCTCCTCGTCTCTCCCATCTCAGTCTGGTCGAGGTTCCCGCAAACAGTCTCATTTGCATCCCGCCCATAGTGCAGCTGGAGCCCAGCCACCTGACGGTGCGTTTGGGGGAGAGTCTCCGCGTGTCCTGCCAGGCGTCCGGATACCCACAGCCTCAAGTCACCTGGAGGAAAGCCTCCCACGGAAAAGCCCAGCTGTCTCCCAGAGGCCTGGTGCAGGAGGTCGGGATGGATGGAGACTCCAAGACCGGAGGGAGGTTGGTGACGGCCAGGCCTGGCAGTAAAGGAGGGCCGGCGAGTCGCGGGCCGGTCCGAGGGGGAACCGATGACGGAGGCGACCGGGAAAGCTTCGATCCCGACACGGGAAGCGGGATGCTGTTTCTCAGCAACGTCACTGTGGCTCATGCCGGACGCTACGAATGCGAGGCCTGGAATCCCGGCGGAGTGGCTCGGGTGACTTTTCACCTCTCGGTGAACATGTCTTCGTCGTTGTCCCGCTCGGAAATCTGGCCTCGATTGCATTCCTCGTCTTACTATCATCCCTCTTCGGTTGACGTGAGTCAGGAGCCCATTTACGAGCTCGAAAGCATGGATTTCAACGCGCTGGGAACCGCCACCCAGACGGCCATCGCGGTGGGAATCTCTCTTTTGGCGTTGACGGCGTTGTTGCTTCTCTGCATGATTTACAGTCGCCACCGGCAACGGCAGAAAGAGGAAGGCGGATACGGCGCCAGCAAAGAGGAAAGCATCCTCTACGTGAACGACTACTCCGATGGTCCCACTACATTCGCTCAACTTGAAGAGTACCGGGACGAACGCCACGAGATGTACGTGTTAAACCGTGCCAAACCGGTGCTGCCTCCGCCGCCGTCCTGCAACCAACCGGGGTCGACGCTCAAAGCCGGCGAGTGCATTCTGACCCCGGGCCGGGCCGTGGGGATCGGACCCCGCCGGGCTCCTGCTGAAGGAGGCGAAGGACCTCCGCTTGATCCCGAAGGGTTGTTCATGAACCAGAGCTTGCTGTTTGACACGCAGATCGCTTATGAGATCCACTGCTGAACCGGATCCCTGGACAGACTTCGAGGTTCTTGCCATAGGATGTTATCCTGCTGAGTTTCCTTTCGTTCTCAGAgcacaaaagtttttttttggtgaaaagcATTGAAGGAATGCCAGATATTAAAGCTGTGGTGTGTAGTTTCAGTGCCACCAAATGTTGAATCAGTGTTGCAACGCTCTTAAAAGTAAAAGCGATACCAAAGAAGAACTATTTTTGGTTGCCCTAAATGAACCTGTcagttttataaaacattaaagttttttggtgtgaaggacattttaataataatctaaagaacttTTTTTCACTGTATAGAACCTTTTGAGCAATGGAAAGGTTAAAGGTTCCTAACTGGCATCTATGGTTTCATTAAGAACCTTTAACAGTCATGGAACGATTCCTCAAAAAGTTATAGcgaaaaaggttctttaaagcatttaaatgttcttcacacgaagagaaatttgttcatttaaaggaGTCATGTGATGCCATTTTAAAGATCTTTATTTTGCGTATTTGGtgctttaatgtaaaaaaaagctattttattaatactgtaCACTATTGTAGCTCCTCTATGCTCTGCCTCTCTCAAACACGTCATTTTCGACAAgcacagtctgctctgattggccagctgaccCAGTTCACAGTGATTGGCCGAGCACCACAAGCACGTGTCAGAAATGTAATGCCTCCCATAATTGCGTGTTCATCTTTATCAAACTTGAAGCGATGACGCTCGTACTGTGATGTGACcccataattttttaaatagccaGTTTTGTACTCTTCTAGGTTCACAAAACGTCGTCCATAAAAATGCGCAAATTCGAACATTTTTGGTGGTGTTGTAAGTAATTTTAATGAATCCTAACTGCATCTACTGTCGAAAGGTCAAATAAAGAGCGTTTGCTTCggtacagaaacacacagcttCTCCCGACACGGCTGAAACCATGCTTTGTTTCTTAGCATTAACATTCGGGCAGCATTACGCAAATATTACCACATCTTGATGTAGGCATACGGGGGCATATTTTAATGAGGCGTTTTAGCCCTGTCTGAATCAGCCTTCTTTTTTAGATAGAACAAATCCTTTTGTTCGAGACTTTGAGCTTTGCGGATCTTATACGTGCACAAACAGCAACATACCGCAttaaagagaaggaaagaaagaaaagaaaattgcatCATGTGACCCCTTTAAGAACTAATCACTGAAAGGTTAATTCTGGGAACACAACGCTGGTTCTTCAGTTGCATTGCTACAAAAAACACCTTTGGgaaggtttattttttaagcgtgTATTTTGTGTGGCTCAAACAAGCAGAGAAATGTTACAGACGTCGGTGTTTACTCTCTTTGGGGAAATCAACCTACAAATGGCTAGTTATAATCATCTCTGGGATTGCACACAGCAGCTTTCagggaatagttcatccaaaaattgaTGCCATTTGCATTGTTTGCATGATTGTTTCGTTCCGTAAAATCACaaatggagattttttttttgaaagcactAGGTTGCGTTAtcggttattttaaaaaaaacatatttcattttctattctgcatatttaaatagttcTTAATCATGTTCCGCCGAGGAAAAGTAAAAGTATGGGTTTGGaaaattaagtaattttatttttgtaattggaaTCATTTTTGAAACATGTGAATGCTTTTGACGgagaaaaaatagcattttttttctacagtgaTAGGGGTGCTAGGGAAAGGAGAGAAAATACAGCTGTGAAGCATGATTGCAAAAATACATCAGGGATAAAATACAAGTGAGCATACGGAGAGTGAGAAAAAGGCTTTCCAAGAGGAGTCCAGTGAAATAATTCATAGACTAGCATTGAACAGTTTGACgtcagtgaagacatttataattttacaatagatttccatttcaaatgttcTATACttcaaagaaacctgaaaaagtATCacggttttcacaaaaatataaagtttcAACATTGATCATTTAtctaaataatgtattttcaacagaaaatcagcatatttgaatggTTTCTGTAGAATCATGTggctggagtaacgatgctaaaatcacaggaataaattactttttataatacatttaaatagctcacagttattttaaattataataacaactCACAATATTATGTCTgtattgtttataaaataacGATACAGCCGTGGTGAACACTATGAGACTtcctttaaattattattattaatttttatttacattttttgtagttGTGAGGGCTAAAAATTTCAACAACCCAGCGTTCATCACTCACTACGACCGGCCTGATCATTCACCGCAGCCTCCTATTTGTTTGGACCAATAAATGCCTGAATATgaatttttgcatgaactattCCTTCTTTAACAGTGCAGGTTTTTGCCGAAAGCAAATCTTGTGGAATAAGAGCTGTTACCTACACCTTTGAAAGAAGAGGTTACGCGAAACTACCAAAAACTGCTATATTTTATCGTGTTACTGTGAGATGAAGTGATCCAGGCGGCTGAGGGTTTGACCTCTTGGACAGGGAGCGAGGACAACGGCGAAGGACGTTTGTCGGGACATCCCTGCGTCCAGGCAGTGTGAATAGCTCAATGTCTTTCTTCTCGCAAATGCTGTATCCTTTCTTTTCCAACGCATTCctgtgtgtattaatgtgtgAACGGCAGGCAGCAGAAGAGAACCAAAcctgctgtaaacaaagaaccAAACGCGGGTCGGAGGTTTGTTCACTGCAGCCTGGATCCAAGTGAAGCAGTCGCATCTATTTCCCGTCTGAGGCTCGTTTGCTCTCCTCTTGACCTCCGTTGGAATAACACTGTGAATAAACAAACAGGACTCTACATTCACAGCTAGCTTTTGTAAGTTATTAGATATGCCGGTTTCTTTCATATAACAGTATTGTTTTTGAGagtgggtttgttttttttttttcctcttggcTTTTTTCTTCCCCAGCGTTACACGGACTATCGAGTAGTGAAGACATCAGGGTAAACTgtataaaagcattcatttcagcTTGTGGGAACATCTCAAGGTGTTAAGCTTCTGCACTCTAGTTTGTGTATTTCTGTCAAATGTCTATCAAATATCAACCTATTTTATCCGAATAAATTATGCCTTTATTTGA

Function

symbol description
lrrc24 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in brain and retinal inner nuclear layer. Orthologous to human LRRC24 (leucine rich repeat containing 24).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 24-like

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264704.1 True 5365 mRNA 0.46 6 25089791 25110776

Neighbor

gene id symbol gene type direction distance location
eef1da eef1da,LOC107713671,LOC107757829,LOC107663523,LOC107599238,LOC107600209,LOC107655868 coding upstream 27281 25051270 ~ 25062510 (+)
trnal-uaa_14 NA coding upstream 39152 25050557 ~ 25050639 (+)
trnal-uaa_13 NA coding upstream 40105 25049604 ~ 25049686 (+)
trnal-uaa_12 NA coding upstream 40659 25049050 ~ 25049132 (+)
trnal-uaa_11 NA coding upstream 41312 25048397 ~ 25048479 (+)
crygn1 crygn1,LOC107600194,LOC107713687,LOC107655847,LOC107558278,LOC107696799,LOC107729968 coding downstream 105712 25216488 ~ 25219623 (+)
LOC122363040 abhd4,LOC107713680,LOC107663512,LOC107655861,LOC107729967 coding downstream 189424 25300200 ~ 25304723 (+)
LOC122322894 zcchc2,LOC107757820,LOC107662991,LOC107599249,LOC107713659 coding downstream 304743 25415519 ~ 25419928 (+)
LOC122358952 LOC107586591,LOC107722548 coding downstream 460365 25571141 ~ 25574135 (+)
LOC122358930 crtc1a,LOC107709901,LOC107680255,LOC107722627,LOC107585074 coding downstream 470024 25580800 ~ 25591012 (+)
G15165 NA non-coding upstream 248798 24788885 ~ 24840993 (+)
G15189 LOC107757823 non-coding upstream 273361 24813299 ~ 24816430 (+)
G15169 NA non-coding upstream 292227 24796813 ~ 24797564 (+)
G15071 NA non-coding upstream 486999 24523424 ~ 24602792 (+)
G15069 NA non-coding upstream 576730 24507886 ~ 24513061 (+)
G15236 LOC107558270,LOC107558271,LOC107713634,LOC107655863,LOC107757833 non-coding downstream 485 25111261 ~ 25115138 (+)
G15240 NA non-coding downstream 12524 25123300 ~ 25145006 (+)
G15233 LOC107600201 non-coding downstream 38479 25149255 ~ 25157235 (+)
G15250 LOC107713636,LOC107655860 non-coding downstream 79244 25190020 ~ 25330287 (+)
G15226 NA non-coding downstream 88915 25199691 ~ 25206930 (+)
zcchc2 zcchc2,LOC107713659,LOC107757820,LOC107599249 other upstream 335200 24687556 ~ 24754591 (+)
G15065 rorcb,LOC107600225,LOC107757806,LOC107698501,LOC107713654,LOC107662989 other upstream 590106 24493438 ~ 24499685 (+)
abhd17aa abhd17aa,LOC107599293,LOC107757810,LOC107698472,LOC107600230,LOC108433103,LOC105904035,LOC108280794 other upstream 839800 24241872 ~ 24249991 (+)
LOC122327442 LOC107549368,LOC107569260,LOC107737397,LOC107681447,LOC107681444 other upstream 992894 24083838 ~ 24096897 (+)
LOC122327425 LOC107728372,LOC107569261,LOC107681443 other upstream 1027589 24059412 ~ 24062202 (+)
G15224 abhd4,LOC107713680,LOC107663512,LOC107655861 other downstream 59960 25170736 ~ 25175288 (+)
LOC122362952 LOC107713688,LOC107600193,LOC107558294,LOC100331938,LOC107729982,LOC107655843,LOC107696796 other downstream 111368 25222144 ~ 25236609 (+)
LOC122327519 hecw1b,hecw1,LOC107600217,LOC107662981,LOC108280656,LOC107576258,LOC107656133 other downstream 283380 25394156 ~ 25406903 (+)
LOC122362387 LOC107722547,LOC107680242,LOC107550619,LOC107688474,LOC107709878 other downstream 381484 25492260 ~ 25516180 (+)
G15410 crsp7,LOC107722610,LOC107688472,LOC107585090,LOC107550620 other downstream 488685 25599461 ~ 25599926 (+)

Expression


Co-expression Network