XLOC_006640


Basic Information

Item Value
gene id XLOC_006640
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25776389 ~ 25778815 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013791
agctcaacctctaaagtcccatatctggctgaggagactgtggatcatccagaacatcaccagtggaaaaaaggtgtgaatgcatcctcaaagcccctaagtgagggagtacatggtaagctattttatttttttaaacattttgtattttcctcttaaaccaattcctcctttcacctttgatctgttggtaaattttaatttttttacctgacttttttaggatgctgggcatgatgaagcgcaaaccttgatgtgcaacaccaccttatgaatctacactagttacattaacatttagcagactcttttgtcttaagtgacttacaattgaggacacattcagcaaatcaacaagaaaAGGCGATACACCCAAtatgtgctaattatacaaaaaaaaaaaaaaaaggtggctgGCGACTTGCGCGCCCAGTCGTCCAGCCAATCTAAGTTTTTGCCTTCTCCTCGGAAGGACCCCCGTCTAACGCCGTAGTCCAGCAGCAGCTCCTCCCTCATGGAGATGTCCCGAAGGGCGCGGAATAGAACGCACTCCCGTGGCCCCTGTGGCAGCGTTAGAAGCTTCACAAAGGGCCGCACGTTGTTGCGGTGCCGGGAGTGGTTCATAAGCCTTCCGAAGGTTTCCATGCCGGGGTGACAGGGGCAGGGCCAGGACTGGGCATCCAGGCAAAGGGTCCTCCCACCAAGCCCTTTAAAGAAATACATGTAGGAGGAGGAGACACGGGGGAGGGCCTCCCGTCTCCTTAAGCCCTCCTCGTGGGACAACTCCTCCCCATGGTAATCACAAATAATTTCTCCTTTTTTAAAGGGCATGGTGGTGACGACTCCTCCGCCTTTGTCCCCAACGGTCTGGATCTCCAGTCCTTTCCAAGACTGCTGGACCACCGACATGACCAGCTGCTAGTCACTGGTGATGGCGGACAGCGCCCTCGAGAGCTCCCACTCTGCCAGGACGCCGTCCACCGTCGGCACGCCGGTGGTCCATGCGGTCTCGGCCCTAATGGCACTCTACACCCGGGCCAGGGAAGGCTTCCGGCCCTTCCGGTCGTTGCACCGCTCAAGGAGATGGCGCGTCCGGATTCCGAGCTGCTCCCCCCTCCAGTGATGGTAGTAGCCATGGTCGGTGAACCCGATCGCGGCTGCCTCCGCCCTACTAGGGGGCTTCCCACCCAAGCCTACCGGAAACTTGTCCTGAAAAGCCCCCCAATAACGAGCCGGAGGCAATGGAGGGGGCTGCAGGCCAGAGGTGGACGGCCTCTCCTCGCCGAAGGAGCAGGCGGCTGAGACAGTGCAGCTGGAGGAGAAGCCGAAGCTGGAGCCAGAGGAGAAGACATAGCAGCGGTGGTAGCGGGCGGCGCGGGCTGCCTCTTGACGTACTTTGCTTTCAGGCGCAGGACGTCCTGGCTGGGGTTAGTGAGGGGGAGTGCTGACGCTGCCAGGAAGAAGCATCCCTTGTCCTCTGCCCCCGGAGCCCGAGCCCTAAGGCAGAGCGGCCGGATGTGCCTGTAATAGCATTCCAGCCACTCCTCTTTCCGGCACAGGCTCACGGTTTTCCCGGGAAGCGTCAGGATTACAGCCTCTCCCTCTGGCCGCCTGCCCAGCCACTCCCGCACCCTAAGCTCCCTGACGCTTCCAGGACCCAGACGGTGTAGCCACATTAGAGTGGAAACGCAGAAGCTGCAAAAATCCGTCTGGGTCCTGGGAGGCAGCTCGCACCGCTGGCCGAGGCGACGGGAGACCTCAGCCATATCCGCCTCCATAGTGGACGGACATGGACTTTTGCTGCCGCTGCTGAGTGTAATGGGCTGCCCCGCGACGAGGAAGCCCTTGGCCCCGAAGTACTCGGCCAAGGAGCCGCAGGTGGGGTCCTCCTGCACAAGGCCCCGCACCTCCGCCAGGCCTACCACCCTCCCCTCTGACTCAAAGGCACGAGCCACCTCCTCCAGGACCAGGGCCTCCTCAGCGCCGCTCATGCAGACCTGCCTCAAGTGCCCTGAGAGGTCCTCCTGAACCGTCAGGCACCCGAGGCAGTGTACAGCAACGCTATGGTCAGTGTTGTCCATCGTCGTTTCGAAATAGTTACCTCAGGTCGACACGGTGGGCGGAGTCgtaagcatatttttaaaatcatttattgttttcaatttatttcatacttgtattaccattattttattagtattaatgttttaacttattgtaataagtgaagatacagataaagacagtatttggattttgacaatcattttattgctggaaaatgtgtaaatctgtaaaaatgctattgaata

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0048731 system development biological_process
GO:0001707 mesoderm formation biological_process
GO:0048732 gland development biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0010646 regulation of cell communication biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0048785 hatching gland development biological_process
GO:0048513 animal organ development biological_process
GO:0003401 axis elongation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0090036 regulation of protein kinase C signaling biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0010470 regulation of gastrulation biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0023051 regulation of signaling biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0060026 convergent extension biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0009790 embryo development biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013791 True 2312 lncRNA 0.55 2 25776389 25778815

Neighbor

gene id symbol gene type direction distance location
XLOC_006639 pdlim1 coding downstream 2206 25762908 ~ 25774183 (-)
XLOC_006638 sgpl1 coding downstream 25479 25725547 ~ 25750910 (-)
XLOC_006637 si:dkey-192p21.6 coding downstream 55482 25642050 ~ 25720907 (-)
XLOC_006636 ret coding downstream 143633 25584556 ~ 25632756 (-)
XLOC_006635 csgalnact2 coding downstream 195086 25569831 ~ 25581303 (-)
XLOC_006641 rel coding upstream 16696 25795511 ~ 25819825 (-)
XLOC_006642 papolg coding upstream 45530 25824345 ~ 25842074 (-)
XLOC_006643 NA coding upstream 67717 25846532 ~ 25853311 (-)
XLOC_006644 NA coding upstream 230682 26009497 ~ 26703804 (-)
XLOC_006645 NA coding upstream 754539 26533354 ~ 26544816 (-)
XLOC_006471 BX537274.2 misc downstream 15511484 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 24950164 825904 ~ 826225 (-)
XLOC_006633 BX005252.1 non-coding downstream 245741 25530534 ~ 25530648 (-)
XLOC_006629 NA non-coding downstream 491673 25210158 ~ 25284716 (-)
XLOC_006619 NA non-coding downstream 1153164 24590420 ~ 24623225 (-)
XLOC_006620 AL831745.2 non-coding downstream 1169762 24602410 ~ 24606627 (-)
XLOC_006618 AL831745.1 non-coding downstream 1188169 24585224 ~ 24588220 (-)
XLOC_006646 AL627132.1 non-coding upstream 788251 26567066 ~ 26567184 (-)
XLOC_006649 NA non-coding upstream 1448546 27227361 ~ 27227750 (-)

Expression


Co-expression Network