viml (viml,LOC107656138,LOC107600213,LOC107599242,LOC107757824)


Basic Information

Item Value
gene id viml
gene name viml,LOC107656138,LOC107600213,LOC107599242,LOC107757824
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24842778 ~ 24849115 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264823.1
CTATAAAGGACGCTTCATCTCAGACCGTCTCTCCCCGTTTGGTACGGTTCCTGAAGAGAGAAACTTCTGAGGTTCACCATGTCCGCCTCCTCCTACAGAAAGCGCTTCGGAGACGCGGGCCGGAGCAGCTCGTTCTCCAGCCGCCAGACCCCCAGCTCCGCGCGCTCTCGGGCGCCTTTCGGCGTTTCCTCGGCTCCGGTCGTTTACGCGTCGAGGAGCTCCAGAGTCCGAAGCAGCGCGGCGATGCCCCGACTGGCCTCCGAGACCCTGGACTTCAACCTCTCGGACGCCCTGAACGCGGAATTCAAGGTCAACCGGCTGAACGAAAAGGCGCAGATGCAGTCTCTGAACGACCGCTTCGCCAGTTACATCGAGAAGGTGCGCTTCCTGGAGCAGCAGAACAAGATCCTGTGCGCGGAGCTGGAGCAGCTGCGGGGCCAGAGGTCGTCGCGCGTCACGGATCTGTACGAGGAGGAGATGCGCGACCTGAGGAGGCAGGTGGACCAGCTCACCACGGAGAAAGCGCGCGTGGAAGTGACGCGAGACAACCTGGCAGACGATTTAGAGCGGCTCAGAGAGAAACTGCAGGATGAGATTCTTCAGAGGGAAGATGCCGAGAGCAGCATGAGGAGTTACAGACAGGACGTGGATAACGCTGCTCTTGCTCGAGTGGATCTTGAGAGGAAGGTGGAGTCTCTTCAGGATGAACTCATCTTCCTCAAAAAGCTCCATGATGAGGAGCTGGCTGAGCTGCAGGCGCAGGTCCAGGGCCAGCAGGTGCAGGTGGATATGGACATGGCCAAACCTGATCTGACAGCCGCTCTGAGAGACGTCAGACTGCAGTACGAGAACCTGGCAACCAAAAACATCCAGGAGTCGGAGGATTGGTACAAATCCAAGTTTACCGACATGACGGAAGCGGCTAACAAGAGCAATGAAGCTCTCCGACTGGCCAAGCAGGAGGCTAACGAGTACCGGCGTCAGGTACAGGCGCTCACCTGCGAGGTGGACGCGCTCAAGGGATCCAATGAGTCTCTAGAGCGCCAGATGAGGGAGATGGAGGAGAACTTTGCAATGGAGTCGTCGGGTTCCCACGACAATATCGATCGGCTGGAGGAGGACATACGCAACATGAAGGACGAGATGGCAAAACATCTGAGGGAGTATCAGGATCTCCTCAACGTTAAGATGGCCCTGGACATCGAGATCGCCACCTACAGGAAACTTCTGGAGGGGGAGGAGAGCAGAATTTCAACCCCTCTTCCAAACTTCTCCTCCTTCAGCCTGAGAGAAACAATGCTGGAGTCCAAGCCTGCCAGCGAAAATACATTTACTAAGAAAGTTCTTATTAAGACCATTGAGACCAGAGATGGACAGGTGATCAATGAGTCCACTCAGAACCACGACGACCTGGAGTGATGAAGGAAATCTCCTGCTGTTATCGTCGCTGCGAGCAACCGACCGCAGCACCTTTCTGCATCCCAACTATCACCTAAGTCTGCTGTGAACGACCCACAATAATCTGCTTCAAAGTGCCTTTACAACCTCCGAAAGTATTTGAGCCCGTAGAGGAAATGTAGCGATAACGCACAAGCACGGAAACAGCATGACCTTTAGCGTACTGTGAATCTTTCTTTGCTGCCTAAGCCTGCGTTTATCTTCTAAATAGCATTTCTGAGCCAACTTCAATGCGTTTAAGCAAAATGCTACGgtaaaaacattcaaagaaGGGTTTGTGTTCATAAAGAAACTCACACTTTGTCTGAATGTTCTTCCTTGGGCTGCTGTTATTATCATTGTGGtaaatctgcaaaaacaaagtaaaacggtAAAAA

Function

symbol description
viml Predicted to be located in intermediate filament.

NR:

description
PREDICTED: vimentin A2

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264823.1 True 1835 mRNA 0.53 9 24842778 24849115

Neighbor

gene id symbol gene type direction distance location
LOC122327477 LOC107653347,LOC107731078,LOC107585662,LOC107568542,LOC107675751 coding upstream 216496 24619987 ~ 24626282 (+)
LOC122325496 LOC107698467,LOC107713624,LOC107600258 coding upstream 291240 24549295 ~ 24551538 (+)
LOC122327453 NA coding upstream 725144 24116742 ~ 24117634 (+)
LOC122327448 NA coding upstream 727671 24112777 ~ 24115107 (+)
LOC122326195 NA coding upstream 731095 24109663 ~ 24111683 (+)
pde1cb pde1cb,pde1c,LOC107713666,LOC108280739,LOC108433077,LOC107712805,LOC107663536,LOC107599240,LOC107757825 coding downstream 1648 24850763 ~ 24919804 (+)
neurod6b neurod6b,LOC107713643,LOC107656134,LOC107599290,LOC107663516,LOC107757826,LOC107600270 coding downstream 82467 24931582 ~ 24934535 (+)
fyco1b LOC107655871,LOC107663534,LOC107757827,LOC107599271,LOC107600249,LOC107713630 coding downstream 114911 24964026 ~ 24978745 (+)
adcyap1r1a adcyap1r1a,LOC107663529,LOC107600211,LOC107655870,LOC108433074,LOC107713631 coding downstream 149665 24998780 ~ 25026174 (+)
trnal-uaa NA coding downstream 192314 25041429 ~ 25041511 (+)
G15165 NA non-coding upstream 1785 24788885 ~ 24840993 (+)
G15189 LOC107757823 non-coding upstream 26348 24813299 ~ 24816430 (+)
G15169 NA non-coding upstream 45214 24796813 ~ 24797564 (+)
G15071 NA non-coding upstream 239986 24523424 ~ 24602792 (+)
G15069 NA non-coding upstream 329717 24507886 ~ 24513061 (+)
G15225 NA non-coding downstream 256588 25105703 ~ 25210816 (+)
G15236 LOC107558270,LOC107558271,LOC107713634,LOC107655863,LOC107757833 non-coding downstream 262146 25111261 ~ 25115138 (+)
G15240 NA non-coding downstream 274185 25123300 ~ 25145006 (+)
G15233 LOC107600201 non-coding downstream 300140 25149255 ~ 25157235 (+)
G15250 LOC107713636,LOC107655860 non-coding downstream 340905 25190020 ~ 25330287 (+)
zcchc2 zcchc2,LOC107713659,LOC107757820,LOC107599249 other upstream 88187 24687556 ~ 24754591 (+)
G15065 rorcb,LOC107600225,LOC107757806,LOC107698501,LOC107713654,LOC107662989 other upstream 343093 24493438 ~ 24499685 (+)
abhd17aa abhd17aa,LOC107599293,LOC107757810,LOC107698472,LOC107600230,LOC108433103,LOC105904035,LOC108280794 other upstream 592787 24241872 ~ 24249991 (+)
LOC122327442 LOC107549368,LOC107569260,LOC107737397,LOC107681447,LOC107681444 other upstream 745881 24083838 ~ 24096897 (+)
LOC122327425 LOC107728372,LOC107569261,LOC107681443 other upstream 780576 24059412 ~ 24062202 (+)
G15224 abhd4,LOC107713680,LOC107663512,LOC107655861 other downstream 321621 25170736 ~ 25175288 (+)
LOC122362952 LOC107713688,LOC107600193,LOC107558294,LOC100331938,LOC107729982,LOC107655843,LOC107696796 other downstream 373029 25222144 ~ 25236609 (+)
LOC122327519 hecw1b,hecw1,LOC107600217,LOC107662981,LOC108280656,LOC107576258,LOC107656133 other downstream 545041 25394156 ~ 25406903 (+)
LOC122362387 LOC107722547,LOC107680242,LOC107550619,LOC107688474,LOC107709878 other downstream 643145 25492260 ~ 25516180 (+)
G15410 crsp7,LOC107722610,LOC107688472,LOC107585090,LOC107550620 other downstream 750346 25599461 ~ 25599926 (+)

Expression


Co-expression Network