neurod6b (neurod6b,LOC107713643,LOC107656134,LOC107599290,LOC107663516,LOC107757826,LOC107600270)


Basic Information

Item Value
gene id neurod6b
gene name neurod6b,LOC107713643,LOC107656134,LOC107599290,LOC107663516,LOC107757826,LOC107600270
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 24931582 ~ 24934535 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043265044.1
CCAACGAAACGTCAGTGGCAGATGGCATGGGTACCAGCGCCGGTGCCTGGCATGGGTGTCATTTctctgtgaaagagagagagggagagagggagattAAAGGAATTCTTACAGCTTCACATCAAGCACATGGGAGGCAGCTCTGCGCGACGCGAGGAATCCGAACATGCGAGCTGAACACTGATAGAAACAGGGACGATGCTAACCGTACCATTTGAAGACCCAGACATGATGCGCGACTCTCAGTTTGGTGCCAGCTTTACCCGCCAAGATACGCTCAGCAGCGCCGAGCTCAAGGAGACGGAGGACGAAAACACGgacagagaagaggaggagagagacgACGAAAACGGTGTCCCTAAGAAGAAAGGTCCGCGTAAAAAGAAATTCTCCGACGGACACAACGACCGCGTCAAAGTGCGCCGGCAAGAAGCAAACGCGCGCGAGCGCAGCCGCATGCACGGCCTCAACGACGCGCTCGAGAGCCTGCGCAAAGTCGTGCCGTGCTACTCCAAAACGCAAAAACTCTCGAAAATCGAGACGCTGAGGCTGGCCAAGAATTACATATGGGCCCTCTCTGAGACTCTGAGCGCGGGAAAGAGACCCGACCTGCTGGCGTTCGTGCAGACCCTGTGTAAGGGCTTGTCGCAGCCCACCACTAACTTGGTCGCCGGTTGCCTGCAGCTGAACGCCAGAAATTTCCTCACGGACCAAAACGGGGACGTGTCGTTCTCAAGCAGGCCTCAGTACGATTCTCTGTACCCGTATCCCAACGCGGAGATGGCCACGCCCACCGGCCTGAGCTCCGGGCCCCGCGACGGCGTCAAGCCGTTCCGACCGTACAACTATTACGCGTCCTACGAGTCCTACTACGACAGCGCCTCTCCAGAGAGCAGCAGCCCTCATTTCGACGGCCAAATGAGTCCCCCGATTAATTACAACGGGATTTTCTCGCTCAAAAAGCACGAGGACCAAGTCGAGTACAGTAAGAACTGCCATTACGGGATGAGATACTGTAACGTTCCCGGTCGGGGCTCCATGTACCGCGTTTCCCCAGACAGCCATTTTCCTTACGACTTGCATCCCCGCAGCCAATCGTTCCAGAGCCAGGACGAATTAAATACGGGTTTCCATAATTAAAAGCGAGCGTAGGGGTTGGATGCCAGTTACACTAatctgttaattaattaatgcttGTTgctgattgttttcttttgatttcgATACACGGTTATTGAGAAGGgggagaagggaaaaaaaaacacaattctatttatttcagaatGCGTAGACTCTTAAAGGTAAAGGCGCTTTCACGgcgatgccacagaagaacctttttttgaGGAACCAGTCGGTCAAAGGTTATTTAAAGAACTTTTGTGATGCGCAGAACCTTCTTTCGTCACGAAGAAGCTTTTGTGAAACCAAAAGGTTCCATTTAGAACAAACGGCATCACGGAGCTCCTTTATTTGCAAGAGCGCGTGTTGCTCACGACGCGGGCTGTTACAATCACTTAATAAAAGATGGAAATCAAATACTTGTAATACAACACTCGTCTCACATCCCGTGCAAACGGGTTTATTCGTGTGTTACACGAAACACAAAATCACGATAGCAATAATGGAACTATGCAACGCAGAATGACAGATATATTAATCCGCGCAGACTTGTAAATAGCCTTATCGTGTGAATTTTACTATTCGTTAGACTTCTGTGTCTTTTGAACTCTAGGTACTCAGCACTCCGATTCCGCGTAACGTCAACAATTAATAAGGAAAGTATTGTGGATTTGccatgtgaaatgttttttgtttctccCTTTATTTGGTTTGTTCTCCGAGGAGCGTCGGGTCTTGTGAACTCGAGGAGCTCGCTTCGATCAACCTGTCGAAATAAATCTTGAATGTGAC

Function

symbol description
neurod6b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cell differentiation; nervous system development; and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain. Orthologous to human NEUROD6 (neuronal differentiation 6).

NR:

description
PREDICTED: neurogenic differentiation factor 6-B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043265044.1 True 1914 mRNA 0.50 2 24931582 24934535

Neighbor

gene id symbol gene type direction distance location
pde1cb pde1cb,pde1c,LOC107713666,LOC108280739,LOC108433077,LOC107712805,LOC107663536,LOC107599240,LOC107757825 coding upstream 11778 24850763 ~ 24919804 (+)
viml viml,LOC107656138,LOC107600213,LOC107599242,LOC107757824 coding upstream 82467 24842778 ~ 24849115 (+)
LOC122327477 LOC107653347,LOC107731078,LOC107585662,LOC107568542,LOC107675751 coding upstream 305300 24619987 ~ 24626282 (+)
LOC122325496 LOC107698467,LOC107713624,LOC107600258 coding upstream 380044 24549295 ~ 24551538 (+)
LOC122327453 NA coding upstream 813948 24116742 ~ 24117634 (+)
fyco1b LOC107655871,LOC107663534,LOC107757827,LOC107599271,LOC107600249,LOC107713630 coding downstream 29491 24964026 ~ 24978745 (+)
adcyap1r1a adcyap1r1a,LOC107663529,LOC107600211,LOC107655870,LOC108433074,LOC107713631 coding downstream 64245 24998780 ~ 25026174 (+)
trnal-uaa NA coding downstream 106894 25041429 ~ 25041511 (+)
trnal-uaa_1 NA coding downstream 107448 25041983 ~ 25042065 (+)
trnal-uaa_2 NA coding downstream 108002 25042537 ~ 25042619 (+)
G15165 NA non-coding upstream 90589 24788885 ~ 24840993 (+)
G15189 LOC107757823 non-coding upstream 115152 24813299 ~ 24816430 (+)
G15169 NA non-coding upstream 134018 24796813 ~ 24797564 (+)
G15071 NA non-coding upstream 328790 24523424 ~ 24602792 (+)
G15069 NA non-coding upstream 418521 24507886 ~ 24513061 (+)
G15225 NA non-coding downstream 171168 25105703 ~ 25210816 (+)
G15236 LOC107558270,LOC107558271,LOC107713634,LOC107655863,LOC107757833 non-coding downstream 176726 25111261 ~ 25115138 (+)
G15240 NA non-coding downstream 188765 25123300 ~ 25145006 (+)
G15233 LOC107600201 non-coding downstream 214720 25149255 ~ 25157235 (+)
G15250 LOC107713636,LOC107655860 non-coding downstream 255485 25190020 ~ 25330287 (+)
zcchc2 zcchc2,LOC107713659,LOC107757820,LOC107599249 other upstream 176991 24687556 ~ 24754591 (+)
G15065 rorcb,LOC107600225,LOC107757806,LOC107698501,LOC107713654,LOC107662989 other upstream 431897 24493438 ~ 24499685 (+)
abhd17aa abhd17aa,LOC107599293,LOC107757810,LOC107698472,LOC107600230,LOC108433103,LOC105904035,LOC108280794 other upstream 681591 24241872 ~ 24249991 (+)
LOC122327442 LOC107549368,LOC107569260,LOC107737397,LOC107681447,LOC107681444 other upstream 834685 24083838 ~ 24096897 (+)
LOC122327425 LOC107728372,LOC107569261,LOC107681443 other upstream 869380 24059412 ~ 24062202 (+)
G15224 abhd4,LOC107713680,LOC107663512,LOC107655861 other downstream 236201 25170736 ~ 25175288 (+)
LOC122362952 LOC107713688,LOC107600193,LOC107558294,LOC100331938,LOC107729982,LOC107655843,LOC107696796 other downstream 287609 25222144 ~ 25236609 (+)
LOC122327519 hecw1b,hecw1,LOC107600217,LOC107662981,LOC108280656,LOC107576258,LOC107656133 other downstream 459621 25394156 ~ 25406903 (+)
LOC122362387 LOC107722547,LOC107680242,LOC107550619,LOC107688474,LOC107709878 other downstream 557725 25492260 ~ 25516180 (+)
G15410 crsp7,LOC107722610,LOC107688472,LOC107585090,LOC107550620 other downstream 664926 25599461 ~ 25599926 (+)

Expression


Co-expression Network