LOC122328201


Basic Information

Item Value
gene id LOC122328201
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15025403 ~ 15026789 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247778.1
aaaaaaaaaaaaaaagggtcatGCAAACTATGAATGATGATTTTTGCATGCGATTTGCAGTGCTTTGCCAGTCAATGAAGGTGTAAACACCACATGATCTGCGTATAAAGAACACATCCAGGTCGACTCAATTCGCATCAAGAACAGTGACACCTGTGCTCACGACAGCAACATCTGGCCACGCGTGTGAACGTGACAGACAACATCTGCTCGGGGCAGTGCCGGAAATCAGGGGAGACCCGAATGCTGCAGCATGAACACGCACCCAGTTTGCCTGCAGGTGAAGCTGAGAATGCAGCAGGACTGCAGCAGTCATGGGTGGATCCTACTGCAGGATCATGTCGCCCTCTAGCAGTCAAAAGTCTCTCTATACTTCTAAAGTGACACTCAGAAGTCCCCCTCCCTTTAAGCTGAGGGCTAAATCGTTATAAGAATCATATGCTGCCTGAAAAGAGCACACTCTCATTCTTATTCATCCGCTCTGAGCTCAGCGCTCCCGCGGTGAGTCACTGCCTACAACAGATTAAATAACATCACCAAAATCCTCAAGAGAACAGACAGAGCATGGAGTTAAACAGCATGTCAACACATTCAAAGCCCAAGCATACACACCCTGCAATCCTATTGGCCGAGGAAGGAGACCGAACATTCTGCTGTTTCCATGGAgcctaaaaatatttttcaaccCAAAATGTGCCGGCAGCCAATAGGAGCGGAGCACAGGAGTACTCCACAGGACTTAAAAGAACTTGAATAAATTAATCATGAGTGCAGCACTAGGAAGAGAGACATGTGACTCAAAAACAAATTTCATCTCAAATGTGGAACCGTTTGACAGGGTAAACCTCACAAGCTTTCTTGAATGgttacaaatgtctttttatctccggttataaaaaataaacaaaaaaaaaacatacactcaAATTATAGATAAATATGCCATTGAGGCAAAAGTCCCTTAAGGTTGAGTATCGCAGTGATTtgaaaaaactcttaaaaactggcacataaaattaatacatttaattggtAAGACTAACACTGTAATGataatgacattataaatgataaatggttgtgaatatta

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0006936 muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko05416 Viral myocarditis

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247778.1 True 1090 lncRNA 0.42 2 15025403 15026789

Neighbor

gene id symbol gene type direction distance location
mycb mycb,LOC107584016,LOC107657430,LOC107713991 coding upstream 87445 14935722 ~ 14937958 (+)
ankhb ankhb,ankh,LOC107657429,LOC107713990,LOC107701025,LOC107718038,LOC108437249 coding upstream 92723 14918221 ~ 14932680 (+)
otulinb LOC107713989,LOC107657417,LOC107718039,LOC107701026,LOC107556827 coding upstream 110094 14910875 ~ 14915309 (+)
stard3nl stard3nl,LOC107686094,LOC107713985,LOC107664037,LOC107751580 coding upstream 161895 14855829 ~ 14863508 (+)
epdr1 epdr1,LOC107664036,LOC107558964,LOC108267170,LOC107713986 coding upstream 170232 14852700 ~ 14855171 (+)
klhl18 klhl18,LOC107657445,LOC107733883,LOC107701005,LOC107730797 coding downstream 188080 15214869 ~ 15222679 (+)
zgc:136930 zgc:136930,LOC107599883,LOC107733879,LOC107657418,LOC107559002 coding downstream 203217 15230006 ~ 15235251 (+)
ccr9a ccr9a,LOC107579348,LOC107733890,LOC107657446,LOC107730785,LOC107557055,LOC107700981 coding downstream 211692 15238481 ~ 15240694 (+)
si:dkey-154p10.3 si:dkey-154p10.3,LOC107733888,LOC107657449,LOC107701000,LOC107730804,LOC107557070,LOC107736657 coding downstream 229255 15256044 ~ 15260435 (+)
LOC122357442 LOC107599890,LOC107657450,LOC107733889,LOC107730803,LOC107701003 coding downstream 233786 15260575 ~ 15262914 (+)
LOC122323195 NA non-coding upstream 42585 14939189 ~ 14982818 (+)
G12143 NA non-coding upstream 139334 14857372 ~ 14886069 (+)
G12144 NA non-coding upstream 146631 14866198 ~ 14878772 (+)
G12136 NA non-coding upstream 195917 14827051 ~ 14829486 (+)
G12135 fam134b,LOC107686060,LOC107664066,LOC107584095,LOC107751562,LOC107558208,LOC107713983 non-coding upstream 198458 14823161 ~ 14826945 (+)
G12211 NA non-coding downstream 8140 15034929 ~ 15037006 (+)
G12255 NA non-coding downstream 91668 15118457 ~ 15180254 (+)
G12273 NA non-coding downstream 121816 15148605 ~ 15150875 (+)
G12321 prpf4ba,LOC107701001 non-coding downstream 225705 15252494 ~ 15253044 (+)
LOC122357737 NA non-coding downstream 471735 15498524 ~ 15500314 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other upstream 242426 14776322 ~ 14782977 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other upstream 272242 14746107 ~ 14753161 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other upstream 845788 14175364 ~ 14179615 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 2151395 12867929 ~ 12874008 (+)
LOC122358236 NA other upstream 2399016 12623823 ~ 12626387 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other downstream 215008 15241797 ~ 15249249 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 833390 15860179 ~ 15875764 (+)
G12531 LOC107722077,LOC107568983 other downstream 1240254 16267043 ~ 16268797 (+)
LOC122323293 NA other downstream 1423343 16450132 ~ 16456532 (+)
LOC122361622 NA other downstream 1697825 16724614 ~ 16776351 (+)

Expression


Co-expression Network