LOC122328801


Basic Information

Item Value
gene id LOC122328801
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7788737 ~ 7791610 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247832.1
ATCACGCAAGAGTTGCGTCATTGCTCGTGAGAGCTCGACAGGTGTGGGAGGGGAAATTCAGACCACGTTAATGGAGGTCGAGCGTGAGTTACCCTAAAACGTCACAAGAGTTAAAGTGCTAAATAATGTCTCTGTCAAATGTGAGCAGATTATTACAGAGAGAATAAAACCGTTTGACAGGAAGATCAATGGTTGACTTGATTGATTGAGCATCCACCCAAATGAATGACACCCCGGAGACACTCTCCCTGTGTCAGATGGATAGATGTACCAATACTGATGATCTAAAAATCAAGATTGCTTGGAAAGCACATCAATGCAGTAACAAATTATGTGCGTGAGCACATTCTGCAGTTTAGAAGAGGTCTACAGGAGAACAAATGTCCATGTCTTTCTCTCATTTTTGCTGttgctgaaaataaatacaattatctTATAATGGGATCCATAGAGATAAAAGTAGTCTTCTATCAAACCTCTGACAGAGAAAGGATGTTGAATGGATAGAAACTCCAGTTAAAGTGCTTCTTTTATCAGCACAcctttttatatgcaaatgtggCAAGTTGCCTATTTACTGGTACAGGAATTCAGGTGAGAATTCATTGCATCTCTTCTCCAGCTGTGGCCTATAATCAAGTGCTGACAAACTCAAATGTGGAAAAACATATTTGGGTTCATATGTGTTGGAAAACCAGCATTTGCAGTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247832.1 True 711 lncRNA 0.40 3 7788737 7791610

Neighbor

gene id symbol gene type direction distance location
ptprfb ptprfb,LOC107710549,LOC107564386,LOC107700544 coding downstream 98162 7582082 ~ 7690575 (-)
st3gal3b st3gal3b,LOC107551715,LOC107743372 coding downstream 329145 7415442 ~ 7459592 (-)
LOC122357527 artn,LOC107743380,LOC107684941,LOC107551717,LOC107700541,LOC107564390 coding downstream 380820 7394352 ~ 7407917 (-)
pif1 pif1,LOC107551719,LOC107716931 coding downstream 421017 7357422 ~ 7367720 (-)
nsun4 nsun4,LOC107684939,LOC107700511,LOC107551708,LOC107577791 coding downstream 432570 7352226 ~ 7356167 (-)
pbx1a pbx1a,LOC107677498,LOC107732204,LOC107700547,LOC107563289,LOC104918287,LOC108272157,LOC103479586,LOC101069707 coding upstream 417041 8208651 ~ 8264576 (-)
tmem275a si:dkey-225f23.5,LOC107577942,LOC107721454,LOC107677914,LOC107553245 coding upstream 557029 8348639 ~ 8353246 (-)
kncn kncn,si:dkey-225f23.3,LOC107700491,LOC107710543,LOC107732197 coding upstream 566121 8357731 ~ 8366287 (-)
cdc20 cdc20,LOC107732200,LOC107553255,LOC107563294,LOC107700550,LOC107710546,LOC107677877 coding upstream 591377 8382987 ~ 8386258 (-)
thpo thpo,LOC107553247 coding upstream 638937 8430547 ~ 8436282 (-)
G10165 NA non-coding downstream 256672 7526339 ~ 7532065 (-)
G10029 rpl5,LOC107568084,LOC107694375,LOC107743362,LOC107716952 non-coding downstream 582335 7204484 ~ 7206402 (-)
G9997 NA non-coding downstream 637034 7149801 ~ 7151703 (-)
G9972 NA non-coding downstream 679445 7107227 ~ 7109292 (-)
G9971 NA non-coding downstream 681599 7106911 ~ 7107138 (-)
G10185 NA non-coding upstream 142791 7934401 ~ 7934625 (-)
G10194 NA non-coding upstream 278544 8070154 ~ 8070353 (-)
G10345 NA non-coding upstream 838796 8630406 ~ 8630606 (-)
G10389 NA non-coding upstream 963239 8754849 ~ 8755145 (-)
G10400 NA non-coding upstream 1006972 8798582 ~ 8798986 (-)
G10178 NA other downstream 3583 7784468 ~ 7785154 (-)
G10170 kdm4ab,LOC107564389,LOC107700543,LOC107551714,LOC107684932,LOC107743373 other downstream 294893 7492206 ~ 7493844 (-)
dipk1aa fam69a,fam69aa,LOC107716951,LOC107568082,LOC108436064,LOC107694372,LOC107743375,LOC108280758 other downstream 564998 7206542 ~ 7223739 (-)
lhx8a lhx8,lhx8a,LOC107693563,LOC108436043 other downstream 775523 7009583 ~ 7013214 (-)
G9926 LOC107563058,LOC107549254,LOC108267243 other downstream 800624 6986301 ~ 6988113 (-)
G10196 NA other upstream 279166 8070776 ~ 8071834 (-)
G10213 NA other upstream 315246 8106856 ~ 8107788 (-)
zfyve9a LOC107700554,LOC107563295,LOC107677579,LOC107553256,LOC107732202 other upstream 611717 8403327 ~ 8427904 (-)
abca4b abca4,abca4b,LOC107564534,LOC107680047,LOC107745690 other upstream 1390446 9182056 ~ 9210041 (-)
plppr5a plppr5,plppr5a,LOC107722655,LOC107693754,LOC107677753,LOC107589876,LOC108441579,LOC107718169 other upstream 1699953 9491563 ~ 9519781 (-)

Expression


Co-expression Network