LOC122328950


Basic Information

Item Value
gene id LOC122328950
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12281372 ~ 12281504 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247863.1
agGAGGATTGAGAAAGTTAAGCAGCTGCATTTGTTCTGCATTAACTGGTTATAACCTCCTAGAAAAAACACAAGTGCTAATGTGCTCATAATGTTCTGTATGAAGTAGTCACTGCAATACTTGTGTACATGTC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko00830 Retinol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247863.1 True 133 snoRNA 0.38 1 12281372 12281504

Neighbor

gene id symbol gene type direction distance location
rps8a rps8a,rps8,LOC107674081,LOC107688507,LOC107602544 coding upstream 165 12278732 ~ 12281207 (+)
LOC122328989 NA coding upstream 713 12280590 ~ 12280659 (+)
LOC122328992 NA coding upstream 1358 12279911 ~ 12280014 (+)
hectd3 hectd3,LOC107688506,LOC107674075 coding upstream 3305 12270887 ~ 12278067 (+)
efna2a efna2a,LOC107688504,LOC107729478,LOC107584867,LOC107602547,LOC107732508,LOC107674409 coding upstream 24485 12204405 ~ 12256887 (+)
lrrc42 LOC107729432,LOC107586495,LOC107602539,LOC107688527,LOC107682545 coding downstream 52283 12333787 ~ 12336926 (+)
ttpa ttpa,LOC107688513,LOC107729218,LOC107584770,LOC107674130,LOC107602535 coding downstream 74384 12355888 ~ 12359062 (+)
asph asph,LOC107729161,LOC107584723,LOC107688512,LOC107714857,LOC107602531 coding downstream 80216 12361720 ~ 12376736 (+)
LOC122360148 LOC108278063 coding downstream 88245 12369749 ~ 12371452 (+)
impa1 impa1,impa1.3,LOC107688552,LOC107586492,LOC107602533,LOC107729422,LOC107714831,LOC107674158 coding downstream 95453 12376957 ~ 12380610 (+)
G11419 NA non-coding upstream 180246 12100875 ~ 12101126 (+)
G11207 LOC107688485,LOC107585026,LOC107550612,LOC107709892,LOC107722651 non-coding upstream 662509 11614241 ~ 11618863 (+)
LOC122328936 NA non-coding upstream 667806 11609251 ~ 11613566 (+)
G11191 NA non-coding upstream 824508 11456326 ~ 11456864 (+)
G11190 NA non-coding upstream 825964 11454258 ~ 11455408 (+)
G11505 NA non-coding downstream 56163 12337667 ~ 12339049 (+)
G11590 NA non-coding downstream 263849 12545353 ~ 12545592 (+)
G11593 NA non-coding downstream 332871 12614375 ~ 12614596 (+)
G11595 dsela,LOC107679326,LOC107584692,LOC107728919,LOC107714854,LOC107674195 non-coding downstream 334491 12615995 ~ 12621414 (+)
G11618 NA non-coding downstream 415582 12697086 ~ 12697294 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other upstream 343782 11908073 ~ 11937590 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 773668 11482104 ~ 11507704 (+)
rps28 NA other upstream 836801 11422090 ~ 11444571 (+)
mrpl34 LOC107688463,LOC107585198,LOC107722555,LOC107680228 other upstream 940261 11339735 ~ 11341111 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other upstream 942903 11303678 ~ 11338469 (+)
LOC122358236 NA other downstream 342319 12623823 ~ 12626387 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other downstream 586425 12867929 ~ 12874008 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other downstream 1893860 14175364 ~ 14179615 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 2464603 14746107 ~ 14753161 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other downstream 2494818 14776322 ~ 14782977 (+)

Expression


Co-expression Network