LOC122356666


Basic Information

Item Value
gene id LOC122356666
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16819837 ~ 16822548 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252362.1
TATGCTAAATTACAAATTTACCCTCTTTATAGTATTATActggaaaaatgtatttgcttaaTGCTGTAATATATAGCACTGGAATGCTCAACAGAGGTCATACAGTTTACAATTTTGATTTTGGGTAAAATCTATTCTATGGGTATAAAAATGCTATGGAATTTGCAGTGGTGCACACTTCATATACAGTACTTGTATTAAAGTCCAATCTAATAGTATAGATGCTATCAAATGTGGTTGATAAAGATCTTTAGAGCAGCAACACACATTTCTTTAGTTTATTATTGACTTTGCTCTGTTTTGGAAATGATTACAGGTATATGAATGTGTTAATATATCTGATATACGGTATCTATAGTCCTATAAAATACGCATATTAATGAACATACAACACTAAAGGTGCCCTCAAAATTTTATTCTTCTGTTGTTTATATCTTCccagtaagaaagaaagaaaaaaagaaagacagaaactttcacaaaacaatacaaataaccGACACAACACCACATTACAAACACCtcctaaaaatacacatttttttgtccaaatgtccaactaaataaatatgcgTTGTTATCAGTAATTACATTGATTCTTGGATTTATTAGTACTGACATAAACTGCCTAAAAGCAACAGTAtctaaaaatcaaataaacctTACACATCAGTCAGACTACTAGTCCTTACATAGCCACCTAATTAGTAATAAACTAATTAGTCATCAGCCATTTAATAGCATGTACAGCAGATGGCAGTGTTCACTCAGATTACAGATGATTTGAATTTTCACTTCGTGTAACATTTGATTCGAAATATAggggaaaacaaataaagaaatgaccTGAAATGACTACAGTGGATTAAAACTATACATGACTAAGACTTTATGATATGATGCTctgaatatatgcatgcataatgccGCCGCAAAATGTGAATAACCAGAAAGCTTAGCAGAAGGTCAAGCAGTCATACATTGCGTTTcagataaatatacaaaatgtacatATCCAAAATTTCTAAAGTTTGATGTAACAAATTATATAGATTTCACAAATCATTATGTCTTGTGATTGGACTGTTACTTGTAAATCTAGTGGTAGTActaatgtttttacatatattatcaaaagttacaaaagaaaaacattgataAACATCTACTAAAGACACAGACGCTGGTCTTAAAGATTGTAGGTCAAGGAAATGCTGTACAGACATTGATCTGACTGAGAGGGTGGAGCTTCGTTGTGTATGAATGCATCTCATAAAAGTGGAGGTGAAACGGTCATCTTGAACCATTATGTTTATCTTCACACTTATTAGTGTATGGATTAATCGGGgtGACACAGGGGCAAATGCGATCTTCCCATTATCTTCTAGCATAAGCACTGTTGTTAATGGAAATGTAACCTTATTTTGCAGTTACAATGGATTTTTCTGGAAATGTGCTCGGTGTGGAGTGGTACAAACAATATCCAAGATCAAAACCTCAGTTCTTCATTAGATTCTATCAACATGGACATCTGACAGGGCCAACTCCAACCCTTTTACCACACTTTTTTAGCTAAAACTGATGGAAGATCTCCAACAATCTCACGTTGCATTATGTTACTTGGATAGATTCAGCGGTGTACTACTGCGCAGTGATGACCACAGTCACAGGAAACCTAGAGGTTCCTatacaaaaatatcatttactTCAGAATGAAGGTCTTTCGTGTGACAATTAAAAcatcttcctcttctcttttGGAGATGaaacaatgttacatttaatgaattatatcaatagcatttctctcttttataATCTATAGCAGGTATCTACACACGGCACAGTTTACAGAAGGCCTTATAGTTTAAGATAATGTGGATGATTTTACTTatgttatttgtaattaaaacataataattgcAATACAGTGACAAACAATTGCCTTACATCTGTATCCACTATTCATTTCTCAAAATCAACAGCTCCCAGAATCCTTTGGGTGGAGCTTGGTGAGAATGCATACAGCAGAAGGCAGTGCTTTGTTACTACAATCTTATTTCGCAGATGATCTCCCACAGTCATaatgattttgttttacttaaatgtttttgcacttCTAACAGaGAGTGTTTCCACGAATGCAATAACATCCCTCTCTACTGAAAATCATGCTTTAGAAGGAGAAAAAGCGACTCTTTCATGCAACTACAGCGGAAATAACATACAGAGTCTTCAGTGGTACAGACAGTATTCCAACACTGCCCCTGAATTTCTCCTGCAAGACTGGGAAACTCAAGGTTCAGAGCAGAAGGGCCGTTATGTTGCTGAAGCGCAAAAAGTCAAAGAACATCTGAAACTGGAGATCTCTAAAACTGAAGTGGAAGATGCTGCAATATACTACTGTGCCCTGGTGCCCACAGTAACAGGAAACACTTCAGCACTGTACAAAAACATGAGAGCATGAGGagtaca

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252362.1 True 2475 lncRNA 0.35 3 16819837 16822548

Neighbor

gene id symbol gene type direction distance location
nmnat2 nmnat2,LOC107658365,LOC107563562,LOC107678925,LOC107557267 coding downstream 121214 16688625 ~ 16698623 (-)
tnn tnn,tnw,LOC107722078,LOC107658358,LOC107678933,LOC107726927 coding downstream 334633 16457757 ~ 16485204 (-)
brinp2 brinp2,LOC107658350,LOC107562711,LOC107722070,LOC107720848,LOC107700985 coding downstream 795187 15948412 ~ 16024650 (-)
cenpl cenpl,LOC107720853,LOC107599910,LOC107657424,LOC107722063,LOC107700989,LOC107557192 coding downstream 959746 15856239 ~ 15860091 (-)
eif2b3 eif2b3,LOC107722074,LOC107599900,LOC107700990,LOC107720854,LOC107558289 coding downstream 986664 15803479 ~ 15833173 (-)
LOC122356645 LOC107709317 coding upstream 25143 16847691 ~ 16849363 (-)
LOC122324462 LOC107709317 coding upstream 29389 16851937 ~ 16852961 (-)
LOC122327065 NA coding upstream 33567 16856115 ~ 16856779 (-)
LOC122327073 LOC107709317 coding upstream 34913 16857461 ~ 16858067 (-)
LOC122355552 LOC107709316,LOC107577925,LOC107658332 coding upstream 36020 16858568 ~ 16859696 (-)
LOC122356638 LOC107558522,LOC107726897,LOC107558467 non-coding downstream 17886 16800431 ~ 16801951 (-)
LOC122356677 NA non-coding downstream 24059 16794348 ~ 16795778 (-)
G12830 NA non-coding downstream 30113 16789255 ~ 16789724 (-)
G12708 NA non-coding downstream 35282 16783144 ~ 16784555 (-)
G12682 NA non-coding downstream 96332 16722696 ~ 16723505 (-)
LOC122356623 NA non-coding upstream 710 16823258 ~ 16824802 (-)
LOC122356651 NA non-coding upstream 12286 16834834 ~ 16836647 (-)
G12844 LOC107563566,LOC107738189 non-coding upstream 21794 16844342 ~ 16847554 (-)
LOC122328563 NA non-coding upstream 53349 16875897 ~ 16876346 (-)
LOC122327095 NA non-coding upstream 59229 16881777 ~ 16882345 (-)
G12839 NA other downstream 13099 16806261 ~ 16806738 (-)
G12658 lamc1,LOC107678923,LOC107726890,LOC107557259,LOC107722047 other downstream 146127 16671576 ~ 16673710 (-)
LOC122362257 LOC107658348,LOC107563587,LOC107678922,LOC107726920,LOC107722065,LOC107559085 other downstream 307818 16483160 ~ 16512019 (-)
pappa2 pappa2,LOC107722077,LOC107568983,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 551002 16224723 ~ 16268835 (-)
ccdc24 ccdc24,LOC107657456,LOC107599905 other downstream 1240131 15559663 ~ 15579706 (-)
G12841 NA other upstream 77 16822625 ~ 16823073 (-)
LOC122327046 NA other upstream 2454 16825002 ~ 16825808 (-)
LOC122327057 NA other upstream 3537 16826085 ~ 16826547 (-)
G12843 NA other upstream 3591 16826139 ~ 16826573 (-)
LOC122356641 LOC107678904 other upstream 3773 16826321 ~ 16828530 (-)

Expression


Co-expression Network