LOC122356731


Basic Information

Item Value
gene id LOC122356731
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8762839 ~ 8765451 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252375.1
TTGtgctcgagagagagagagagagagagagagagagaaggctgATTGTGTGTCTGGGCGTCTGTGTTGAGCTGTGAGCTCTTTGAGACTGTGCATCCAAGAGTGAAAGTAAAAGAGCAGGAGAGCGAGTGAGGAATGACAGAGGAGGCTGAGGCTACGCCGCACACTCGAGCCTCGGAGACGCGCTTTGGACCCGACACCTGCCAAAGCGACGCCACCCTTCTTTTTCTAGCTGTGCGTCCACATGCGCACCCAGCACAGTGCCGGTGAGGTGGGCGTCCCGCTGGCAGGAGGTGGCTGCAGTGGTGGCAACTCAGAGCAGTCACCTGGCTTTGACTCAGACTGTAGCCCCGCTCTGGGACTGGCCGGAGGGGTTAGAGCAGTGCGAGGGGTCATGTCCCATTACTGGAGTCTGGAGAGCCTTCACTCCACCAACGGGTTGGCATGGTGACAGACAAGCCAATGACCGTCAGCCAAGGTAGCACTGATGTCACAAACGGCCACCGCTACCCACGTCAGCTGCAATTTggatgtttttctcattttctgctTTGTCCTAAGAGAGATGGGATGTGACTTTTCCTGTGATGGAGGGAAATAAATGGTGCACTGTGAGCCGGGGGCAATAGCTACAGACATTTCAAACAGCGCTGTCACCTCGTCACGGTCCGCTGACCTCATTACAGCGCTCATATAGCTGATCGTAGAACAgtccgaagaaaaaaaaaacaggagtgACATGTGAGAAACGTGTCGAACTGGATCTTTGTAAGTTTGAACATTAGAAGTGTTTGATGAGAGTTTGTTTATGCACAAATCCCAAGGCTCTTTCTCGGCATCACCAGACAGAAATGGTTTGGGTTCAAGCCAGACTGGACACGCAGAACTCATTCACTAAACTGATAGACTCTCTATTCTAGTGTGGGCCAACAAGAACTGGTTTTTAGTGTAATTACTGACTGGGAGGTCCAcagtatatactgtaatatCTCGAGAAAGCTAGCCATTAGCATTTCCGTTTGTCTCAGTGGCATTTGCTTAGCTGGTGCAGGATACCTCAGAATACTGTGACAGTCTATATCTAGTTTACTTttaaaaggtaacactttagcgacctattatcattattaaccGGATGCTTATTAGAATGCCTATTGTTGTATTAGTAGGTCTACTCACAAatcacatattctgcatgaccacccaatacctaaacttaacaactgtcTAGTCAAAAACAGCGTTATCACAACATGCtactaattttagtttttttttataatatggcGACCTCAAAAGGTATTTAGACacttacagtatttttaatgcattttacaataaaatccAAACCAAGACACAGCACCTGGGAAATAgggaatattttattattaagatattttgtaccaTTTGCCTTTAATACAGTTTCCAACTGTCTTAGAATAGATTCATAGAACCTTTGAATAGTCCCCGGTTGAATGTGGTTTATCAGAACATCTGCCAGTTGCCTAGAGATGTTGGAGGAGGGAACTGGCTACTCACTTTTCTTTCCAAAACTGCCCACAGTGGTTGACAATAATCAAGTCAGGTGATTAAGCTGGGGAAGTTCATCTGAGTGCTCCAGATGTCTAGGCTTTATGATCATGACaccatatttttcacattttatcacTAATTTCTGTGATAAAAGTTATAATTTGCTGCTCTTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252375.1 True 1708 lncRNA 0.45 2 8762839 8765451

Neighbor

gene id symbol gene type direction distance location
amer3 LOC107710619,LOC107700565,LOC107677756,LOC107732953,LOC107553265,LOC107569737 coding upstream 100516 8651917 ~ 8662323 (+)
atr atr,LOC107677746,LOC107700496 coding upstream 111293 8630412 ~ 8651546 (+)
atp1b3a atp1b3a,LOC107700561,LOC107563307,LOC107710617,LOC107732952,LOC107677716,LOC107553263 coding upstream 163244 8590241 ~ 8599595 (+)
clcn2a clcn2,clcn2a,LOC107732945,LOC107710554,LOC107677884 coding upstream 275935 8439879 ~ 8486904 (+)
cc2d1b LOC107563292,LOC107710553,LOC107700553,LOC107677533 coding upstream 359625 8386877 ~ 8403214 (+)
LOC122361595 LOC107710620 coding downstream 65369 8830820 ~ 8841734 (+)
LOC122359011 arhgef4,LOC107700563,LOC107710620,LOC107553266,LOC107732940 coding downstream 82876 8848327 ~ 8878100 (+)
vav3b vav3b,LOC107700567,LOC107732951,LOC107677852,LOC107553269 coding downstream 125322 8890773 ~ 8929310 (+)
col11a1b col11a1b,LOC107680048,LOC107594685,LOC107710593,LOC107564536,LOC107700498,LOC107745694 coding downstream 322243 9087694 ~ 9154434 (+)
tecrl2b tecrl2b,LOC107564537,LOC107745691 coding downstream 408402 9173853 ~ 9180307 (+)
G10284 LOC107710615 non-coding upstream 173765 8587377 ~ 8589074 (+)
G10271 NA non-coding upstream 201326 8560098 ~ 8561513 (+)
G10226 NA non-coding upstream 234132 8522402 ~ 8528707 (+)
G10219 pbx1a,pbx1b,LOC107677498,LOC108272157,LOC107564502 non-coding upstream 500009 8219265 ~ 8262830 (+)
G10198 NA non-coding upstream 672303 8081817 ~ 8090536 (+)
G10371 NA non-coding downstream 33140 8798591 ~ 8798996 (+)
G10374 NA non-coding downstream 114491 8879942 ~ 8880453 (+)
G10431 NA non-coding downstream 164053 8929504 ~ 8930073 (+)
G10433 NA non-coding downstream 174518 8939969 ~ 8941186 (+)
G10445 NA non-coding downstream 290272 9055723 ~ 9056245 (+)
G10212 NA other upstream 655062 8106865 ~ 8107777 (+)
G10108 NA other upstream 1180454 7504622 ~ 7582385 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other upstream 1462738 7285670 ~ 7300101 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 1657047 7098303 ~ 7105792 (+)
G9925 LOC107563058,LOC107549254 other upstream 1775720 6986298 ~ 6987119 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other downstream 397160 9162611 ~ 9171915 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 981119 9746570 ~ 9751212 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other downstream 1146177 9911628 ~ 9916861 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other downstream 1393081 10158532 ~ 10161809 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 1897278 10662729 ~ 10665110 (+)

Expression


Co-expression Network