LOC122359499 (LOC107689414,LOC107722600,LOC107585244,LOC107688455)


Basic Information

Item Value
gene id LOC122359499
gene name LOC107689414,LOC107722600,LOC107585244,LOC107688455
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11167903 ~ 11170232 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252708.1
GGTCCACCGGGCCCACCTGGACCTCCAGGGCCACCAGGACGAGTAATTGGTCTCAATGGAACAGTTTTCCCAGTTCCTCCTAGACCACACTGCAAAATACCAgtcaacaacaacaattcaCAACAAGgCAATGGAAGAGCGTCATTAGGAGTCAAAGGGGACAAGGGTGATGTGGGAAATCCTGGGTTGCCTGgaactgcagtgCCTTTGTTTCCTCATAGTTATGAGGGCGCTAAAGGTGATATTGGCTACAAGGGGCAAAAGGGAGAAAAGGGG

Function

NR:

description
PREDICTED: collagen alpha-1(XV) chain-like

GO:

id name namespace
GO:0001654 eye development biological_process
GO:0031012 extracellular matrix cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252708.1 True 276 lncRNA 0.51 6 11167903 11170232

Neighbor

gene id symbol gene type direction distance location
LOC122359349 rabggtb,LOC107584851,LOC107732517,LOC107576861 coding downstream 8590 11155262 ~ 11159313 (-)
col15a1b LOC107585244,LOC107722600,LOC107688455 coding downstream 278630 10864071 ~ 10889273 (-)
xirp1 LOC107722568,LOC107688450,LOC107585289,LOC107689412,LOC107718087,LOC107589818 coding downstream 441057 10710965 ~ 10726846 (-)
cdyl cdyl,LOC107689409,LOC107688447,LOC107722500 coding downstream 483248 10669470 ~ 10684655 (-)
LOC122359387 LOC107688520 coding downstream 502833 10664288 ~ 10665070 (-)
slc12a7a LOC107722598,LOC107585218,LOC107589906,LOC107718080,LOC107688522 coding upstream 36212 11206444 ~ 11227249 (-)
myh7 vmhc,LOC107688458,LOC107722552,LOC107589804,LOC107680223 coding upstream 130860 11301092 ~ 11312718 (-)
ano8a LOC107718073,LOC107688459,LOC107589801,LOC107586092,LOC107722556,LOC107680225 coding upstream 171156 11341388 ~ 11350664 (-)
plvapa LOC107688534,LOC107722517,LOC107586083 coding upstream 183201 11353433 ~ 11356400 (-)
zgc:154006 LOC107722587,LOC107688535,LOC107585150,LOC107680250,LOC107718071,LOC107688536,LOC107722589 coding upstream 197338 11367570 ~ 11377879 (-)
G11237 LOC107722600,LOC107585244,LOC107688455 non-coding downstream 504 11165967 ~ 11167399 (-)
G11234 NA non-coding downstream 17399 11147248 ~ 11150504 (-)
LOC122359521 LOC107674200,LOC107602529,LOC107729365,LOC107584650,LOC107679329 non-coding downstream 47116 11116997 ~ 11120787 (-)
LOC122359508 NA non-coding downstream 63311 11101522 ~ 11104592 (-)
G11118 NA non-coding downstream 189623 10952927 ~ 10978280 (-)
G11246 NA non-coding upstream 122983 11293215 ~ 11300016 (-)
G11263 NA non-coding upstream 252438 11422670 ~ 11423431 (-)
LOC122328878 NA non-coding upstream 269770 11440002 ~ 11440899 (-)
G11280 NA non-coding upstream 284026 11454258 ~ 11455403 (-)
G11281 NA non-coding upstream 286094 11456326 ~ 11456854 (-)
LOC122359462 NA other downstream 265278 10897549 ~ 10902625 (-)
LOC122359216 tgfbr1a,LOC107688454,LOC107585257,LOC107722631,LOC107589809,LOC107718081,LOC107689415 other downstream 306308 10767974 ~ 10861595 (-)
G11105 LOC107688455,LOC107585244,LOC107722600 other downstream 364615 10800716 ~ 10803288 (-)
G11102 tgfbr1a,LOC107585257,LOC107722631,LOC107688454,LOC107689415,LOC107718081 other downstream 403012 10758028 ~ 10764891 (-)
fbxl7 fbxl7,LOC107718179,LOC107689422,LOC107688519,LOC107589836,LOC107722558,LOC107585539 other downstream 746428 10392682 ~ 10421475 (-)
trnau1apb LOC107688461,LOC107585172,LOC107722553,LOC107680226,LOC107589802,LOC107718075,LOC102202587 other upstream 165486 11335718 ~ 11339611 (-)
kcnn1a LOC107722564,LOC107585128,LOC107718068,LOC107680246,LOC107589798 other upstream 209011 11379243 ~ 11405700 (-)
cnn2 cnn2,LOC107585101,LOC107688471,LOC107709904,LOC107550622,LOC107680261 other upstream 270758 11440990 ~ 11445113 (-)
crsp7 crsp7,LOC107722610,LOC107688472,LOC107550620,LOC107709903,LOC107585090,LOC107680253 other upstream 276857 11447089 ~ 11453203 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other upstream 406159 11576391 ~ 11577516 (-)

Expression


Co-expression Network