XLOC_006641 (rel)


Basic Information

Item Value
gene id XLOC_006641
gene name rel
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25795511 ~ 25819825 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012824
TATGTAGTAGAAGTGTTTCTGAATATCTGTTCAGCTCTTGGAGTTCGGACGTATAACAAACCTACGACACTGGTGTTATGGATGTGCAATCCCTCTCAATGCACAGGGATCCCCATCTAAtggGAGAGCCATGTGTTCAGATTTTCGAGCAGCCCAAACAGAGAGGCATGCGTTTCAGATATAAATGCGAAGGTCGTTCTGCGGGCAGCATACCAGGAGAAAGAAGCTCTGACAATAACAGAACCTACCCAAGCATTCAGATTCTTAATGTCACTGGCAAAGGAAAAGTGCGTGTTACTTTGGTGACCAAAAGTGAACCTTACAAACCCCATCCCCATGACCTAGTGGGAAAAGACTGCAAGGATGGATATTACGAGGCAGAGTTTGGACCTGAACGAAGGGCCATTGCTTTTCAGAATCTGGGCATCCAGTGTGTGCGGAGAAGAGAAGTGAAGGATGCCATCATGCAGAGGGTGACACGAGGAATCAACCCCTTCAATGtTCCCCGTGAGCAGCTGCTACAGACTGAAGAGTATGATCTGAATGTGGTGCGTCTGTGCTTCCAGATTTACCTGCAGGATGAGAGCGGGATGTACAGCACCATGCTGCCTCCCATCGTTTCCAACCCCATCTATGACAACAGGGCCCCGAACACAGCCGAACTGCGGATCTGCCGGGTGAACAAGAATAGCGGCAGTGTAAAGGGAGGCGATGAGATTTTCCTGCTCTGCGATAAAGTGCAGAAAGATGACATCGAGGTGCGGTTCTTCACTCAGACCTGGGAGGCCAAAGGCTCTTTCTCTCAGGCAGATGTGCACAGACAAGTGGCCATAGTGTTCAAGACCCCTGCTTACTGTGACACCAGCATCACTGCTCCGGTCACTGTGCGCATGCAGCTGCGCCGACCCACAGACCAGGAGGTCAGTGAGCCCATGGAGTTCAGATACCTGCCTGATGAcaaagaTCCCTACGGCTGTCGTGAGAAGAAACGTAAAATCGACATGCAGATGAAATCCTCCTTCCCAAGCTTCTCCCAGGAAGCCATGAGCTTCATGAACAGAACAAAAGCCGTGTCTTCAACCAACTTGATGAATCAGAGAATCAAAACCGAGCCACCAAATTTTTATCGCCCACCAAACCAAGGGGTGGCCCGCCAAAATCAGCCAGTCTATTATAACAAAGGCCTTCGGTCCTGCCCTATGATGCCACATCCATCAGAAACCACGACACAAGGAGCTCTAAGCCAGTGGACCAGTCAAGTCACCAACACTTCTGTGCCCAATAATGTTGTAAGTCTACAGCAGGTGAACCCAAGTCCCAACATGCCAAGTGCAGGGGAAAATGGAAACAGCCTTCCTCTGTTGACCTCGATGGATCTGGAGATTCTTCAACCCAACGGACCAACCGGCAACCAGCCTCGACAGGACCTACTAAACCAGCAGGTTCAGCAATCCCAACAGCCACCACAAAGACAAGGACAGGAAGGAGCCTGGTATAACTACAGCTCCCAACAGcctcaaaacacacaaaatggagCATCAGGCGCTAGTGGGTCACTAGCAACGGGCTACCAGTTTACAAGCGGCTTAGAGGATGATATCTTGCAAAGTCTCATGGGTAATCATCAACCAGGCATCCAGTTGAAACAGGAACCTCAAGGGCTGAGCAACATGGCTCCATTGGTCAACTCGGATTGTGTACAGTCCTTCACAGCCCTCCTAAACTGCAACAATGGAAGTACTCCAGAACACATGAGACAAATAGACCCCAATGGCGCCAATCAGAGGGTCTCGCAGATACAGTATCCTTCTGGAAATATGGGGCAGGAGAGCCATCTTGAGCATTACACCTGGCACTTTCCCGAATAGAGTTGAAGATTTTTCTCGGTCTTTAAGCGTAGGCCACGGTTTATGTTCACtgaatgtatttttgattaaagatCTGGAGGGTTTGTTGTGTAGGGATTACTGTAAATGCTGATTCACACCGCACTGATAGATGACGATATACAGACAGGACAATCAAAAGAGATTACAGTACATCACTATTTGACCCTATAGATGCCATGAGAAATCATGGAAATGATTGCTGACAAGAGAAAATGTGctgatccacaaaaaaaaaaaaaaaaaaaaaa

Function

symbol description
rel Enables protein heterodimerization activity. Acts upstream of or within brain development. Predicted to be located in cytoplasm. Is expressed in intestine. Orthologous to human REL (REL proto-oncogene, NF-kB subunit).

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0038061 NIK/NF-kappaB signaling biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006954 inflammatory response biological_process
GO:0007249 I-kappaB kinase/NF-kappaB signaling biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0033554 cellular response to stress biological_process
GO:0034097 response to cytokine biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0005829 cytosol cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko04014 Ras signaling pathway
ko04624 Toll and Imd signaling pathway
ko05202 Transcriptional misregulation in cancer
ko05203 Viral carcinogenesis
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-040718-255 Enables protein heterodimerization activity. Acts upstream of or within brain development. Predicted to be located in cytoplasm. Is expressed in intestine. Orthologous to human REL (REL proto-oncogene, NF-kB subunit).

Ensembl:

ensembl_id ENSDARG00000055276

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012824 True 2137 mRNA 0.48 10 25795511 25819825

Neighbor

gene id symbol gene type direction distance location
XLOC_006640 NA coding downstream 16696 25776389 ~ 25778815 (-)
XLOC_006639 pdlim1 coding downstream 21328 25762908 ~ 25774183 (-)
XLOC_006638 sgpl1 coding downstream 44601 25725547 ~ 25750910 (-)
XLOC_006637 si:dkey-192p21.6 coding downstream 74604 25642050 ~ 25720907 (-)
XLOC_006636 ret coding downstream 162755 25584556 ~ 25632756 (-)
XLOC_006642 papolg coding upstream 4520 25824345 ~ 25842074 (-)
XLOC_006643 NA coding upstream 26707 25846532 ~ 25853311 (-)
XLOC_006644 NA coding upstream 189672 26009497 ~ 26703804 (-)
XLOC_006645 NA coding upstream 713529 26533354 ~ 26544816 (-)
XLOC_006646 AL627132.1 coding upstream 747241 26567066 ~ 26567184 (-)
XLOC_006471 BX537274.2 misc downstream 15530606 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 24969286 825904 ~ 826225 (-)
XLOC_006633 BX005252.1 non-coding downstream 264863 25530534 ~ 25530648 (-)
XLOC_006629 NA non-coding downstream 510795 25210158 ~ 25284716 (-)
XLOC_006619 NA non-coding downstream 1172286 24590420 ~ 24623225 (-)
XLOC_006620 AL831745.2 non-coding downstream 1188884 24602410 ~ 24606627 (-)
XLOC_006649 NA non-coding upstream 1407536 27227361 ~ 27227750 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_11874504_11884601 REL coding CI01000012 null 11874504 ~ 11885292 (+)