LOC122355552 (LOC107709316,LOC107577925,LOC107658332)


Basic Information

Item Value
gene id LOC122355552
gene name LOC107709316,LOC107577925,LOC107658332
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16858568 ~ 16859696 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_219
CATAATTAGTGTGCCAGTGATCCACCACAACTATGTGTCTTAAACCACAAGACAACAGGATGCGGTCACACctgctgaaacaaaaaaaaaaaagaagtggcACCCCCAAGTTCTGTTGCTTAGGTCCACCTCTTTAGGCTTTCTCAAAACTTGTTGCTGTGAACTTAATTACATgaacatgaaacatttacatattgTTTGTTATACACTGTGAACTCCTGATTCTCATaacagatacttttttttttaaatgtgtgctttacatatgcatatgaattttgtgtatgtgcgttttaaaagaaattaatatttatattcagcaAAGACGCTTTAAATTAATCAGTAGTGACGTTAATGACATATCAGtgaaaacaatgacaaaagatttctatttcaaatagttttatattttaaatgggtTTACATACATTGCAGTTTATGCATTATAACTTTAAGGGGAGGGGCTACTGAGACATATTAATTGAgttagaaaaaaacactttagtaaCGGTAACAGGTGTTGCAGATATATCATCCTAAACAATGGCACTcttcgtttttattttgttttctctaTCAGGCAGCATTTCTGGAAATGTCATCACACCGGTCCACGGTGTAGTATACGAAACAGAAAAGGACATTATAATTCTGTCCTGTAACTACTCCTCAGCAGCGAGTCTATATTGGTATCGCCAATATCCTGGATTGGCTCCTGAATTTCTTTTAGTCATTCTTCATGCTACCGGGAAAGTTTTGCAAAAGTCTAAAATCGTGGAACTAGATCCTCGATTCTCTGGAAAACTGAATAAAGAGAAAACCTACACGCATCTTGAAGTTTCCTCTGCTAAAGTGACAGACTCAGCGATGTACTACTGTGCCCTGGAGCCCACAGTGACAGGAAAGTATGCAACACTGTACAAAAACCCCCATCTACATAAAGGCTAAAGCATACCACAGAATTGCAGAAacgtttcatttaaaagaaatccccaaataaaatgctaattaatgttTC

Function

NR:

description
PREDICTED: immunoglobulin iota chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_219 True 1018 V_gene_segment 0.40 2 16858568 16859696

Neighbor

gene id symbol gene type direction distance location
LOC122327073 LOC107709317 coding downstream 501 16857461 ~ 16858067 (-)
LOC122327065 NA coding downstream 1789 16856115 ~ 16856779 (-)
LOC122324462 LOC107709317 coding downstream 5607 16851937 ~ 16852961 (-)
LOC122356645 LOC107709317 coding downstream 9205 16847691 ~ 16849363 (-)
nmnat2 nmnat2,LOC107658365,LOC107563562,LOC107678925,LOC107557267 coding downstream 159945 16688625 ~ 16698623 (-)
LOC122327154 LOC107738269 coding upstream 61974 16921670 ~ 16924976 (-)
LOC122358305 NA coding upstream 66460 16926156 ~ 16926931 (-)
slitrk3b slitrk3b,LOC107738193,LOC107591445,LOC107659424,LOC107684436,LOC107557370,LOC107706330,LOC108415341,LOC105906128 coding upstream 225334 17085030 ~ 17091311 (-)
ifi44c2 zgc:153654,LOC107684434,LOC107591326,LOC107738189,LOC107559148,LOC107706401,LOC107659373 coding upstream 268805 17128501 ~ 17131989 (-)
map1sb map1sb,LOC107738188,LOC107684407,LOC107591330,LOC107659421,LOC107706295,LOC107558785 coding upstream 273381 17133077 ~ 17141787 (-)
G12844 LOC107563566,LOC107738189 non-coding downstream 11014 16844342 ~ 16847554 (-)
LOC122356651 NA non-coding downstream 21921 16834834 ~ 16836647 (-)
LOC122356623 NA non-coding downstream 33766 16823258 ~ 16824802 (-)
LOC122356666 NA non-coding downstream 36020 16819837 ~ 16822548 (-)
LOC122356638 LOC107558522,LOC107726897,LOC107558467 non-coding downstream 56617 16800431 ~ 16801951 (-)
LOC122328563 NA non-coding upstream 16201 16875897 ~ 16876346 (-)
LOC122327095 NA non-coding upstream 22081 16881777 ~ 16882345 (-)
G12864 NA non-coding upstream 33090 16892786 ~ 16893100 (-)
G12868 NA non-coding upstream 39948 16899644 ~ 16900070 (-)
G12881 NA non-coding upstream 63306 16923002 ~ 16923439 (-)
LOC122356633 NA other downstream 27176 16828935 ~ 16831392 (-)
LOC122356641 LOC107678904 other downstream 30038 16826321 ~ 16828530 (-)
G12843 NA other downstream 31995 16826139 ~ 16826573 (-)
LOC122327057 NA other downstream 32021 16826085 ~ 16826547 (-)
LOC122327046 NA other downstream 32760 16825002 ~ 16825808 (-)
LOC122355584 NA other upstream 1336 16861032 ~ 16861844 (-)
LOC122327077 NA other upstream 3232 16862928 ~ 16863490 (-)
LOC122355559 LOC107709313 other upstream 7055 16866751 ~ 16867660 (-)
LOC122355567 LOC107709307,LOC107709313 other upstream 8401 16868097 ~ 16873019 (-)
LOC122327088 NA other upstream 10529 16870225 ~ 16870796 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016602 tradv25.0.1 coding NC_007113.7 CM002886.2 36278980 ~ 36279485 (-)
grasscarp (Ctenopharyngodon idella) CI01043951_00000946_00003151 NA coding CI01043951 null 841 ~ 3151 (-)