G84485 (vaspa,LOC107722097,LOC107565535,LOC107710395,LOC107671612,LOC107575450)


Basic Information

Item Value
gene id G84485
gene name vaspa,LOC107722097,LOC107565535,LOC107710395,LOC107671612,LOC107575450
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12045 ~ 122767 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU125172
TGTTTCTGTCGAAGCAGGAAACGTTTGATGTGAAGCGGATGTCGAGTCTCTCTCTGAATCTTCATGAGCAGCGCGGGTGACATCGAGCTCCATCAGTCATGGGCGAGCAAAGCATCTGTCAGGCGCGGGCCACCGTGATGATGTACGACGACGGCAGCAAGCGCTGGGTCCCGGCCGGCTCGGGCGCTCAGGCCGTCAGCAGGGTGCACATCTTCCAGAACCCCAGCAACAACAGCTTCAGGGTGGTGGGCCGCAAACAGCAGGCCGATCAGCAGGTGGTCATTAACTGTCCTCTGGTCCGGGGGCTGAAGTATAACCAGGCCACCCCGACCTTCCACCAGTGGCGTGATGCCCGTCAGGTCTGGGGTCTGAACTTCGGCAGTAAAGAAGACGCGGCTCAGTTCGCCGGCAGCATGATGCACGCGCTCGAGATGCTCAGCGGAGACGCCGGTGCGTGTCCTCCTCCTCGACCGCCTCCGAACGGCCCCAGCCCTGAGGAGACCGAGCAGAAGAGGAGACAGGagcagcaggagagagagacacgcGTCCGCCGCTCCAGCCCCGCCCCAGGTCCGCCTCCAGGCCCTCCCCTGCTCCTGGCCCCGCCTCTGGTCCGCCTCCTCCCCGGACCTCCC
>TU125173
TGATGGTGTTTCTGTCGAAGCAGGAAATGTTTTGATGTGAAGCGGATGTCGAGTCTCTCTCTGAATCTTCATGAGCAGCGCGGGTGACATCGAGCTCCATCAGTCATGGGCGAGCAAAGCATCTGTCAGGCGCGGGCCACCGTGATGATGTACGACGACGGCAGCAAGCGCTGGGTCCCGGCCGGCTCGGGCGCTCAGGCCGTCAGCAGGGTGCACATCTTCCAGAACCTCAGCAACAACAGCTTCAGGGTGGTGGGCCGCAAACAGCAGGCCGATCAGCAGGTGGTTATTAACTGTCCTCTGGTCCGGGGGCTGAAGTATAACCAGGCCACCCCGACCTTCCACCAGTGGCGTGATGCCCGTCAGGTCTGGGGTCTGAACTTCGGCAGTAAAGAAGACGCGGCTCAGTTCGCCGGCAGCATGATGCACGCGCTCGAGATGCTCAGCGGAGACGCCGGTGCGTGTCCTCCTCCTCGACCGCCTCCGAACGGCCCCAGCCCTGAGGAGACCGAGCAGAAGAGGAGACAGGagcagcaggagagagagacacgcGTCCGCCGCTCCAGCCCCGCCCCAGGTCCGCCTCCAGGCCCTCCCCCTGCTCCTGGCCCCGCCTCTGGTCCGCCTCCTCCCCC
>TU125174
TGATGGTGTTTCTGTCGAAGCAGGAAATGTTTTGATGTGAAGCGGATGTCGAGTCTCTCTCTGAATCTTCATGAGCAGCGCGGGTGACATCGAGCTCCATCAGTCATGGGCGAGCAAAGCATCTGTCAGGCGCGGGCCACCGTGATGATGTACGACGACGGCAGCAAGCGCTGGGTCCCGGCCGGCTCGGGCGCTCAGGCCGTCAGCAGGGTGCACATCTTCCAGAACCTCAGCAACAACAGCTTCAGGGTGGTGGGCCGCAAACAGCAGGCCGATCAGCAGGTGGTCATTAACTGTCCTCTGGTCCGGGGGCTGAAGTATAACCAGGCCACCCCGACCTTCCACCAGTGGCGTGATGCCCGTCAGGTCTGGGGTCTGAACTTCGGCAGTAAAGAAGACGCGGCTCAGTTCGCCGGCAGCATGATGCACGCGCTCGAGATGCTCAGCGGAGACGCCGGTGCGTGTCCTCCTCCTCGACCGCCTCCGAACGGCCCCAGCCCTGAGGAGACCGAGCAGAAGAGGAGACAGGagcagcaggagagagagacacgcGTCCGCCGCTCCAGCCCCGCCCCAGGTCCGCCTCCAGGCCCTCCCCTGCTCCTGGCCCCGCCTCTGGTCCGCCTCCTCCCCGGACCTCCC

Function

symbol description
vaspa Predicted to enable SH3 domain binding activity and profilin binding activity. Predicted to be involved in actin cytoskeleton organization; nervous system development; and positive regulation of actin filament polymerization. Predicted to act upstream of or within actin polymerization or depolymerization. Predicted to be located in cell projection; cytoplasm; and cytoskeleton. Orthologous to human VASP (vasodilator stimulated phosphoprotein).

NR:

description
PREDICTED: vasodilator-stimulated phosphoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125172 False 635 TUCP 0.64 5 12045 19533
TU125173 False 635 TUCP 0.64 5 115719 122767
TU125174 True 642 TUCP 0.64 5 12045 122767

Neighbor

gene id symbol gene type direction distance location
LOC122355205 dlx4b,LOC107739765,LOC107664616,LOC107708902,LOC107557342 coding upstream 48995 171762 ~ 176703 (-)
LOC122355756 LOC107660458 coding upstream 70966 193733 ~ 208068 (-)
LOC122355212 LOC107561990,LOC107575498 coding upstream 95447 218214 ~ 222873 (-)
LOC122355214 LOC107561990,LOC107575498 coding upstream 101111 223878 ~ 228330 (-)
LOC122355215 vkorc1,LOC107719575,LOC107598672,LOC107654009,LOC108413442 coding upstream 110499 233266 ~ 234678 (-)
G84487 NA non-coding upstream 17333 140100 ~ 141081 (-)
LOC122355221 LOC107561990,LOC107660458 non-coding upstream 74134 196901 ~ 197393 (-)
LOC122355220 LOC107561990,LOC107660458 non-coding upstream 74633 197400 ~ 198867 (-)
LOC122355197 NA non-coding upstream 259805 382572 ~ 385022 (-)
LOC122355423 NA non-coding upstream 263122 385889 ~ 386457 (-)
LOC122355191 dusp3b,LOC107753093,LOC107590411,LOC107688089,LOC107709997 other upstream 45281 168048 ~ 171295 (-)
G84521 NA other upstream 196563 319330 ~ 321260 (-)
prr12a prr12a,LOC107708947,LOC107664611,LOC107598586,LOC107654018,LOC107732166 other upstream 217506 340273 ~ 360482 (-)
LOC122355759 NA other upstream 361671 484438 ~ 490379 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other upstream 374197 496964 ~ 500219 (-)

Expression


Co-expression Network