G84486 (emsy,LOC107671635,LOC107690840,LOC107722098,LOC107565537,LOC107747365)


Basic Information

Item Value
gene id G84486
gene name emsy,LOC107671635,LOC107690840,LOC107722098,LOC107565537,LOC107747365
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 78617 ~ 129985 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU125175
CAAGCCCATGGCGTTCCAGGCGGCGGTGGTCAGTGAACAGACCCGGCAGCTGGTCAGCGAGACTCTGCAGCAGGTGTCCCGCAGCACCGAGACGGCGGCCGGCTCCGGTCAGGACGGGCCGCTGAAGGACGACTCGTACACCGACAGCAGCCCGGTGACCTCGGACAGCGCTCACGaCGCTCCCCCAGTGGTGCACCTCATCACCTCCAGAGGGCAGGAGTGGACGGAGCAGGAGGTGTCTGTGGAGGCCAGTCCCACCATCATTTACCAGGACCTGAGCGGAGAGGCTCAGTCAGCCACCTCCACCATCAAAGCCCTGCTGGAGCTGCAGCAGACCAGCGTGAAGGAGAAGAGCGAGGCCAAACCTCGTCAGCACACCATCGATCTGAGTCAGATGGCCGTTCCCATCCCGGTGACAGCGGAGAGGAGACAGTCCCCGGAGCCGTCGGGCCAGAGCGCCGCAGACACGGACCCCGGGGCCGAGTACATCCCCATCGGTAAAGTGTGTAAGGCTGTGATCGGAGGAGACGTGTCTGCATCCAGCAGCCCGAGTCCATCGGCGCGTGTGTCCGCCCCAGCAGCGCCTCCCACGGTCAAGAGCTCCGCCCC
>TU125176
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcagatAGAGGCGTGTGCTGCGCAGGTGAAGCCGCTGCAGGAGCAGGTGTTGGTGGAGGAGGGCGAGCTGGAGGGAGACACTCTGGATCCTCAGACGGGTTTGTTCTACCGCTCGTCTCAGCAGCACCGCAGTCCTCCGCCCAAACCCGCAGCCGGCCCGTCTGACACGCCCACTTCCTCCAAGAGGGCGGAGCCTGCGGTGGCCCGAGTCTCGGTGCAGAGGGTGTCTGCGTCAGCGTCTGCGTCTGCGCTGGTCTCCTCCACCCCtccacacacaccacagctGCCCAGACTGCAGCAGGCTCCCTCCTCGCACCACCGgcccaacacacacacgcagctgTCCCAGCCGCCCCCGCTGCAGGCCCATCACCCCGTGGGCTCCGGCAAGATGCCCGGCTGCGGCCAGGTCCAGCAGCCGATCATCACACAGGGTGCGGCGGTCACTAAGATCACGCTCGGCTCACCAGTGCCCCCGGTGTCCAGCAGCGGCGAGGCATCCGGCAAGGTCCAGCCCGAGTCCAGCTCCGCCGCCGGGCGGGGCGGCTGAGAAGACCTCGGTCTCGGACATCCTGAAGATCTCCATGATGGAGGCGGAGATCGACCCCAGCGCCGAGCCCATGGTGGTGGACTCGTCCAGCGACTGCGGGCCGCTGACCAAAGCCCCGGGCGCCTCGCCGCTCATCAGCAGCTCCAAACAGACCCTCGCTCACGGAGCCTTCAGCCGAGCCAAGAGCAAAGACCTGGACATCATACAGGTGATCCCGCAGTACTCCATCATGCCCGACTCCAGCCAATCAAACGTGGTGGTGGAGCCCAGCGGCTTTCTGGAGATCACCGAC
>TU125178
GTGTGTATACAGTTGAACATCAACTAAACTGAGTTCTGGTGCCAAATGGGCTCTAAACGCTCCAGTGTTgttgaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcagatAGAGGCGTGTGCTGCGCAGGTGAAGCCGCTGCAGGAGCAGGTGTTGGTGGAGGAGGGCGAGCTGGAGGGAGACACTCTGGATCCTCAGACGGGTTTGTTCTACCGCTCGTCTCAGCAGCACCGCAGTCCTCCGCCCAAACCCGCAGCCGGCCCGTCTGACACGCCCACTTCCTCCAAGAGGGCGGAGCCTGCGGTGGCCCGAGTCTCGGTGCAGAGGGTGTCTGCGTCAGCGTCTGCGTCTGCGCTGGTCTCCTCCACCCCtccacacacaccacagctGCCCAGACTGCAGCAGGCTCCCTCCTCGCACCACCGgcccaacacacacacgcagctgTCCCAGCCGCCCCCGCTGCAGGCCCATCACCCCGTGGGCTCCGGCAAGATGCCCGGCTGCGGCCAGGTCCAGCAGCCGATCATCACACAGGGTGCGGCGGTCACTAAGATCACGCTCGGCTCACCAGTGCCCCCGGTGTCCAGCAGCGGCGAGGCATCCGGCAAGGTCCAGCCCGAGTCCAGCTCCGCCGCCGGGCGGGGCGGCTGAGAAGACCTCGGTCTCGGACATCCTGAAGATCTCCATGATGGAGGCGGAGATCGACCCCAGCGCCGAGCCCATGGTGGTGGACTCGTCCAGCGACTGCGGGCCGCTGACCAAAGCCCCGGGCGCCTCGCCGCTCATCAGCAGCTCCAAACAGACCCTCGCTCACGGAGCCTTCAGCCGAGCCAAGAGCAAAGACCTGGACATCATACAGGTGATCCCGCAGTACTCCATCATGCCCGACTCCAGCCAATCAAACGTGGTGGTGGAGCCCAGCGGCTTTCTGGAGATCACCGAC
>TU125181
tgtggtgtgtgtGGCGAGCTGGAGGGAGACACTCTGGATCCTCAGACGGGTTTGTTCTACCGCTCGTCTCAGCAGCACCGCAGTCCTCCGCCCAAACCCGCAGCCGGCCCGTCTGACACGCCCACTTCCTCCAAGAGGGCGGAGCCTGCGGTGGCCCGAGTCTCGGTGCAGAGGGTGTCTGCGTCAGCGTCTGCGTCTGCGCTGGTCTCCTCCACCCCtccacacacaccacagctGCCCAGACTGCAGCAGGCTCCCTCCTCGCACCACCGgcccaacacacacacgcagctgTCCCAGCCGCCCCCGCTGCAGGCCCATCACCCCGTGGGCTCCGGCAAGATGCCCGGCTGCGGCCAGGTCCAGCAGCCGATCATCACACAGGGTGCGGCGGTCACTAAGATCACGCTCGGCTCACCAGTGCCCCCGGTGTCCAGCAGCGGCGAGGCATCCGGCAAGGTCCAGCCCGAGTCCAGCTCCGCCGCCGGGCGGGGCGGCTGAGAAGACCTCGGTCTCGGACATCCTGAAGATCTCCATGATGGAGGCGGAGATCGACCCCAGCGCCGAGCCCATGGTGGTGGACTCGTCCAGCGACTGCGGGCCGCTGACCAAAGCCCCGGGCGCCTCGCCGCTCATCAGCAGCTCCAAACAGACCCTCGCTCACGGAGCCTTCAGCCGAGCCAAGAGCAAAGACCTGGACATCATACAGTACTCCATCATGCCCGACTCCAGCCAATCAAACGTGGTGGTGGAGCCCAGCGGCTTTCTGGAGATCACCGAC

Function

symbol description
emsy Predicted to act upstream of or within DNA repair; chromatin organization; and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Orthologous to human EMSY (EMSY transcriptional repressor, BRCA2 interacting).

NR:

description
PREDICTED: BRCA2-interacting transcriptional repressor EMSY-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125175 False 609 TUCP 0.66 4 81280 84145
TU125176 True 977 TUCP 0.64 4 78617 129985
TU125178 False 956 TUCP 0.64 3 78617 80839
TU125181 False 781 TUCP 0.67 4 78617 107650

Neighbor

gene id symbol gene type direction distance location
LOC122355847 LOC107690849,LOC107671610,LOC107710396,LOC107565533,LOC107575145,LOC107575144 coding downstream 15574 44012 ~ 63043 (-)
LOC122355205 dlx4b,LOC107739765,LOC107664616,LOC107708902,LOC107557342 coding upstream 41777 171762 ~ 176703 (-)
LOC122355756 LOC107660458 coding upstream 63748 193733 ~ 208068 (-)
LOC122355212 LOC107561990,LOC107575498 coding upstream 88229 218214 ~ 222873 (-)
LOC122355214 LOC107561990,LOC107575498 coding upstream 93893 223878 ~ 228330 (-)
LOC122355215 vkorc1,LOC107719575,LOC107598672,LOC107654009,LOC108413442 coding upstream 103281 233266 ~ 234678 (-)
G84487 NA non-coding upstream 10115 140100 ~ 141081 (-)
LOC122355221 LOC107561990,LOC107660458 non-coding upstream 66916 196901 ~ 197393 (-)
LOC122355220 LOC107561990,LOC107660458 non-coding upstream 67415 197400 ~ 198867 (-)
LOC122355197 NA non-coding upstream 252587 382572 ~ 385022 (-)
LOC122355423 NA non-coding upstream 255904 385889 ~ 386457 (-)
LOC122355191 dusp3b,LOC107753093,LOC107590411,LOC107688089,LOC107709997 other upstream 38063 168048 ~ 171295 (-)
G84521 NA other upstream 189345 319330 ~ 321260 (-)
prr12a prr12a,LOC107708947,LOC107664611,LOC107598586,LOC107654018,LOC107732166 other upstream 210288 340273 ~ 360482 (-)
LOC122355759 NA other upstream 354453 484438 ~ 490379 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other upstream 366979 496964 ~ 500219 (-)

Expression


Co-expression Network