LOC122355197


Basic Information

Item Value
gene id LOC122355197
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 382572 ~ 385022 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU125268
GCAGACTGGGAAGTAATCCTATATATATTCGTTGTTCGCCCCGCACTTCCTTAAAGGCTTCCTTCTCGGCTCTCTTGACATTGTGtcacacaaacaaagaaaaatgccTGAAGAAGTTCCTGCTCAGTGCAAGGCTCCCAAAGAAGAGCTGGATAAATGTGTTCAGGGGAAGGGTGCGGAGGGCTGTAAGGAGCTGCTGGAAGCTTTTGAGGCCTGTGTGAAGGGGGCCACGGCAGCCTCGTGAGGGGACACGCATTTACATGTCCATCCTTTCTGGGTCCTCCGGCGTCCTTGCATTCCCTCACATCGCACTGGACCGAACCATTCTAAGGACAGCGAGAGGGGTGCGAGTGCTGGAAAGCAGCGGAAATTGTTTATTTCGATCCTGGGAAGTCTTGTTGGTGTCCCTCATGTCGTCCGTGATATCTGTAACTGTGGAAGAGAGAAGAACccagttttattattgtttcccAGAtttcacactgtaaaaaaaaagcgcaTTTCATTC
>XR_006252187.1
AGACTGGGAAGTAATCCTATATATATTCGTTGTTCGCCCCGCACTTCCTTAAAGGCTTCCTTCTCGGCTCTCTTGACATTGTGtcacacaaacaaagaaaaatgccTGAAGAAGTTCCTGCTCAGTGCAAGGCTCCCAAAGAAGAGCTGGATAAATGTGTTCAGGGGAAGGGTGCGGAGGGCTGTAAGGAGCTGCTGGAAGCTTTTGAGGCCTGTGTGAAGGGGGCCACGGCAGCCTCGTGAGGGGACACGCATTTACATGTCCATCCTTTCTGGGTCCTCCGGCGTCCTTGCATTCCCTCACATCGCACTGGACCGAACCATTCTAAGGACAGCGAGAGGGGTGCGAGTGCTGGAAAGCAGCGGAAATTGTTTATTTCGATCCTGGGAAGTCTTGTTGGTGTCCCTCATGTCGTCCGTGATATCTGTAACTGTGGAAGAGAGAAGAACccagttttattattgtttcccAGAtttcacactgtaaaaaaaaagcgcaTTTCATTCGactttgaataaattattataattgtttcttta

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU125268 False 508 lncRNA 0.49 3 382605 385022
XR_006252187.1 True 539 lncRNA 0.47 3 382572 385020

Neighbor

gene id symbol gene type direction distance location
brsk1a si:ch211-255p10.4,LOC107598587,LOC107732176,LOC108441159,LOC108273514,LOC107654020,LOC107557374,LOC103033508,LOC108427376,LOC107658484,LOC107548343 coding downstream 1405 363606 ~ 381167 (-)
irf3 NA coding downstream 43579 333577 ~ 338993 (-)
LOC122355359 LOC107654014,LOC107664598,LOC107557378,LOC107708888 coding downstream 64043 298608 ~ 318529 (-)
LOC122355360 LOC107598582,LOC107654016,LOC107732180,LOC107708889,LOC107664586 coding downstream 84458 292041 ~ 298114 (-)
LOC122355757 LOC107557351,LOC107719532,LOC107654013,LOC107708952,LOC107598581,LOC107664606,LOC107708954 coding downstream 91917 272266 ~ 290655 (-)
mapta LOC107598589,LOC107732173,LOC107654024,LOC107664605 coding upstream 22334 407356 ~ 434276 (-)
LOC122355175 NA coding upstream 54848 439870 ~ 444825 (-)
LOC122355758 NA coding upstream 84821 469843 ~ 477539 (-)
rbp4 rbp4,LOC107743953,LOC107664626,LOC107598599,LOC107557363,LOC107653948 coding upstream 238889 623911 ~ 626522 (-)
fra10ac1 fra10ac1,LOC107664625,LOC107654038,LOC107708941,LOC107557362,LOC107743956 coding upstream 255849 640871 ~ 650188 (-)
LOC122355220 LOC107561990,LOC107660458 non-coding downstream 183705 197400 ~ 198867 (-)
LOC122355221 LOC107561990,LOC107660458 non-coding downstream 185179 196901 ~ 197393 (-)
G84487 NA non-coding downstream 241491 140100 ~ 141081 (-)
G84492 LOC107565537,LOC107671635,LOC107690840 non-coding downstream 292998 88055 ~ 89574 (-)
LOC122355423 NA non-coding upstream 867 385889 ~ 386457 (-)
G84547 NA non-coding upstream 93001 478023 ~ 478431 (-)
G84654 NA non-coding upstream 225045 610067 ~ 611847 (-)
G84666 slc35g1,si:ch211-197g18.2,LOC107598601,LOC107654036,LOC107664634,LOC107664593,LOC107557359,LOC107708939 non-coding upstream 275067 660089 ~ 663746 (-)
G84700 NA non-coding upstream 374903 759925 ~ 789003 (-)
prr12a prr12a,LOC107708947,LOC107664611,LOC107598586,LOC107654018,LOC107732166 other downstream 22090 340273 ~ 360482 (-)
G84521 NA other downstream 61312 319330 ~ 321260 (-)
LOC122355191 dusp3b,LOC107753093,LOC107590411,LOC107688089,LOC107709997 other downstream 211277 168048 ~ 171295 (-)
G84486 emsy,LOC107671635,LOC107690840,LOC107722098,LOC107565537,LOC107747365 other downstream 252587 78617 ~ 129985 (-)
G84485 vaspa,LOC107722097,LOC107565535,LOC107710395,LOC107671612,LOC107575450 other downstream 259805 12045 ~ 122767 (-)
LOC122355759 NA other upstream 99416 484438 ~ 490379 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other upstream 111942 496964 ~ 500219 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other upstream 158224 543246 ~ 552443 (-)
dlx4b dlx4b,LOC107739765,LOC107557342,LOC107708902 other upstream 504688 889710 ~ 897517 (-)
ank3b ank3b,LOC107654059,LOC107695539 other upstream 1429061 1814083 ~ 1947412 (-)

Expression


Co-expression Network