XLOC_006642 (papolg)


Basic Information

Item Value
gene id XLOC_006642
gene name papolg
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25824345 ~ 25842074 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012825
GGAGCAGCAACTATTGTTATAAATTGAGACGGGGCTGCTGCTGGCTGAGTTTACATGTTTTTTGCGCGTTTGTTCTGAAAATATTTGGATATTTCTACGCAAGGTCATGAGAGAGATGTCAGCGACTGGTAACAGTACGCTTGGCGGGCAGCAGCCTCGGAAACATTATGGCATCACATCTTCAATCAGCCTGGCATTTCCCAGAGAGATAGACCATATCTACACTCAGAAGCTCACTGAGGCTATGAAACCATTTGGAGTGTTTGAAGGTGAAGATGAGCTCAATCACAGgCTTGCGGTTCTTGGGAAGCTAAATTCGTTTGTGAAGGAGTGGATTTCTGAAATCAGTGAATCAAAGAATCTTCCACCGTCAGCAGTAGCGAATGTTGGTGGCAAAATCTTTACGTTTGGGTCCTATAGGTTGGGAGTGCACACAAAAGGTGCTGATATAGATGCTTTGTGTGTTGCCCCACGTCATGTTGAAAGAACAGACTTTTTTTCATCCTTCTTTGAAAAACTAAAACGGCATGATGAGATTAAGGACCTACGCGCTGTGGAAGATGCATTTGTACCAGTGATCAAGTTCAAGTTTGATGGCATCGAGATTGATCTGCTGTTTGCCAGACTTGCTCTACAGTCCATTCCTGATAACCTGGACCTGAGAGGAGACTCTCTCCTCAGAAACTTGGACATCAGATGTATTCGCAGTCTAAATGGTTGTCGTGTTACAGATGAGATCCTATATTTGGTGCCTAATAAAGAGAATTTCAGATTAACATTAAGAGCGATTAAACTGTGGGCCAAACgccgTGGAATCTATTCCAACATGCTAGGCTTTCTCGGCGGAGTTTCCTGGGCTATGCTGGTGGCCAGAACATGTCAGCTTTACCCAAATGCTGTTGCCGCCACGCTTGTGCATAAGTTCTTTCTGGTCTTCTCTAAATGGGAATGGCCAAACCCTGTGCTTTTAAAACAACCCGAAGACAGCAATTTGAATCTGCCGGTCTGGGATCCACGGGTGAATCCATCAGACCGGTATCACTTAATGCCAATCATCACTCCTGCATATCCACAACAGAACTCCACCTACAACGTGTCCACTTCCACACGCACTATCATGAATGAGGAGTTCAAGAATGGTCTCACTGTTACAGATGAAATTCTTCAGGGTAAAGCCGACTGGTCCAAGTTGTTTGAACCTCCCAACTTTTTCCAACAGTATAGgCATTACATTGTCCTCACTGCCAGTGCATCCACTGAGGAAAACCATTTAGAGTGGATTGGATTGGTTGAATCAAAGATAAGAGTGTTGGTTGGAAACTTGGAGCGAAATGAATACATCACTCTTGCCCATGTCAATCCACAGTCTTTTCCTGGGTCAAAAGAGAATCGCAATGAGAATGATTTTGTTTCCATGTGGTTTATTGGAATCAGCTTTAAAAAACTGGACAATTCTGACTGTGTGAATATTGACTTGACCTACGACATTCAGTCTTTCACAGATACTGTTTATAGACAGGCCAGCAACATCAACATGCTGAAGGATGGCATGACGATTGAGGCTACACATGTGAAGAAGAAACAGCTGCATCATTACCTGCCTCCTGAGCTGGTGCAGAGGAAAAAGAAGagTTTGGGAGATATAAACCGGAGCTCAAATGGTGGCGGGTCAAAGCGCTGCTCTCTGGATAGCAGTCAGCTGGACAGCTCCAGGGACACAGACATTGGCACGCCATTCAGCTCTCCTACACCCATCAGCAAACCATGCCAGCCAGCCTCCACACCTGAAGACAATAGTAGTAGCCCACCCCAGCATCCAGTTCTTGTGTTCATGGACAGCCCACCAGCATCAGAACTGTCTCAACCAAAACCAGAACAAGGAATGTCCATTCCAGTCATCGGCTCCAAGCCCATCACCACTCCAGTTGCCAAGCCCCCAACACCTCCAGCTGGCAACACTATTCCTACAGTGGTGGGTCGCAGTGTAATACCACGACTTGCCGCTTCCTCCCCTGAACTGGCCAACAGTGTAAATGGAGCGCCAAAGAGACCTCACTCTCCATCTCTGGAGGACCCACCTAAGAGGCACAAAGACACAGAGGTGTTCTCTGATGACTCTGCGTTTAAAGAGCCGTATCCTCCCTCTAGCAATGGCTTGGATGGTGACGAGGGACAAACAGTGGAGACTCTCGCAGAAACCAAAGCTATGCCAATACCAACAATTGATACATCAAGATCACAGAGACTCCCCAGCAAAGAGCTTCCCGATGCATCTTCTCCAATCCCCACAAGCAACCTTCGCGTGATTAAAAACTCAATCAGACTCACTCTTAACCGATAACAGTGAGTTTATCCACAGGTTGTCCTTTAAAGAGTGGAACCCCTCTTGTAACAGCAGTGCTGCTTTTAAACTGCTACTGATATTTGGCCGGTCTTCCTGCTTGTTACAGATTTATTGTAAagtatggacttttttttttttttcttcagttgttttttttttatgctttactATCATAATGCTTGCTTCAACATCTCTGAGCTTTTGAAACCGCTTGTACAGTAGTTgtagtttgtatatatatatatctttaaaaaccATTGTTAGTCTTTCTATGCCTCAGTGtagtttttattaacaaaaaaagagaaaaaaaattgtcctgTTTGTCACTGTATATGAGATTCGTCGTCGTTTGTCTTAAGGTTTTCCTTGCAGTCTTTTTCTAATCGCTGTGTTGGTTCTGGTACAGTTTCTGGGAGGACCTTTTGTGTGgggtgtgaatgcgtgtgtgagtgtgtagatGGACCAGCGTTAGTAACACAAAACCATGACTCATTACCTGGCATAAACTCTGCTGCCACTTCATAGTTTTGTTACCCGCTCTGTACAAAAGAGCAAAGTTAGATCTGAGGTTTGGGTTTGTTGGGCCAATATTTTCAAGGCAGGTTTGGTTTTACAGTGAGGTTGCAGGTTATTTGCGGGTCAGTGTTGGTTTTtgcgtgtgcatgtgcatgattgTAATTCCCTTCATCTAGGGCATCACCCCTGCGCCTCCCATGGAGGTCTGAATGGCAGAGTCTCCCAAACTTCAAGAACAGAGACTAAATGAGATTTCTGCCCTCTTTCCATCATCCCCCCCCACCCTTATTTGTTTTGCCCCCCCTTTCATTTCCAAAAGTTACTGTCCTGCCCTGTTGGGGTGTACAGATAAAAGACTTCTTATTCATTTTGGGGtttcttaacattttatttatttgtaccattatcatttttttatatcACAGGTATTGCAGTTGAACATCTAGAAATTAATTTCATTGCTCAGTTCCAATCTACCTGTTACCTTTAGGacaatttgcaaaaaaatatatctacTTGTCATTCTTTTGTAGGGCAAAAGTTGTATTTGAAAGggtatttttgtatgtaatgtaaaCTGCCTTCTTTACATTAAGAACATAAAAATTCACAAAACCCCAAA
>TCONS_00012826
ACCACGACTTGCCGCTTCCTCCCCTGAACTGGCCAACAGTGTAAATGGAGCGCCAAAGAGACCTCACTCTCCATCTCTGGAGGACCCACCTAAGAGGCACAAAGACACAGAGGTGTTCTCTGATGACTCTGCGTTTAAAGAGCCGTATCCTCCCTCTAGCAATGGCTTGGATGGTGACGAGGGACAAACAGTGGTGAGGGTTTCCCCATGTTTATTGCTCAGGCTTCAGGTGTTAACCACAATTATTTATTGACTATTTTATTGAAAGGGAAACTTTTCTAGCGTTAATAAAATATGAACTCATGCAAGGTGTGCGCAaagaatttttttgttgttgctgtttttgacACAGGAGACTCTCGCAGAAACCAAAGCTATGCCAATACCAACAATTGATACATCAAGATCACAGAGACTCCCCAGCAAAGAGCTTCCCGATGCATCTTCTCCAATCCCCACAAGCAACCTTCGCGTGATTAAAAACTCAATCAGACTCACTCTTAACCGATAACAGTGAGTTTATCCACAGGTAACTCGAGTTGTTACTGTTGCTTCCATTCTTTGGTTTGCCCTTTAATCTGTTTTCCCTCTTGAACATCTGCCCATACAGGTTGTCCTTTAAAGAGTGGAACCCCTCTTGTAACAGCAGTGCTGCTTTTAAACTGCTACTGATATTTGGCCGGTCTTCCTGCTTGTTACAGATTTATTGTAAagtatggacttttttttttttttcttcagttgtttttttttt

Function

symbol description
papolg Predicted to enable polynucleotide adenylyltransferase activity. Predicted to be involved in mRNA polyadenylation. Predicted to act upstream of or within RNA 3'-end processing; RNA polyadenylation; and mRNA processing. Predicted to be active in nucleus. Orthologous to human PAPOLG (poly(A) polymerase gamma).

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0043631 RNA polyadenylation biological_process
GO:0031123 RNA 3'-end processing biological_process
GO:0005634 nucleus cellular_component
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0004652 polynucleotide adenylyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1256 Predicted to enable polynucleotide adenylyltransferase activity. Predicted to be involved in mRNA polyadenylation. Predicted to act upstream of or within RNA 3'-end processing; RNA polyadenylation; and mRNA processing. Predicted to be active in nucleus. Orthologous to human PAPOLG (poly(A) polymerase gamma).

Ensembl:

ensembl_id ENSDARG00000012141

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012825 False 3485 mRNA 0.44 23 25824345 25842074
TCONS_00012826 True 754 lncRNA 0.43 3 25825327 25827135

Neighbor

gene id symbol gene type direction distance location
XLOC_006641 rel coding downstream 4520 25795511 ~ 25819825 (-)
XLOC_006640 NA coding downstream 45530 25776389 ~ 25778815 (-)
XLOC_006639 pdlim1 coding downstream 50162 25762908 ~ 25774183 (-)
XLOC_006638 sgpl1 coding downstream 73435 25725547 ~ 25750910 (-)
XLOC_006637 si:dkey-192p21.6 coding downstream 103438 25642050 ~ 25720907 (-)
XLOC_006643 NA coding upstream 4458 25846532 ~ 25853311 (-)
XLOC_006644 NA coding upstream 167423 26009497 ~ 26703804 (-)
XLOC_006645 NA coding upstream 691280 26533354 ~ 26544816 (-)
XLOC_006646 AL627132.1 coding upstream 724992 26567066 ~ 26567184 (-)
XLOC_006647 vrk2 coding upstream 937930 26780004 ~ 26799244 (-)
XLOC_006471 BX537274.2 misc downstream 15559440 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 24998120 825904 ~ 826225 (-)
XLOC_006633 BX005252.1 non-coding downstream 293697 25530534 ~ 25530648 (-)
XLOC_006629 NA non-coding downstream 539629 25210158 ~ 25284716 (-)
XLOC_006619 NA non-coding downstream 1201120 24590420 ~ 24623225 (-)
XLOC_006649 NA non-coding upstream 1385287 27227361 ~ 27227750 (-)

Expression


Co-expression Network