ifnphi4 (LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348)


Basic Information

Item Value
gene id ifnphi4
gene name LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 543246 ~ 552443 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU125427
TTACAGAagaaaaaaaaaaacaagtgctaATCAGTGTTTACACTCCTTTtctataatgttattttatacagCGCTAcgcagtgtttatttattatcgTTTTGATTCCTCATGCTGTGATATGCTATTTATACgagttttaataaattatttaaatcttattttatttatttgtggaatttaacattttatacgCCGCGATTTTGCATACTAATATTTATAGATTATCTccttatttattaatgttgtctttttttaactgttatatgtaaaaaaaatgcataaatgaagaGATGAAGTGACTTTTTGTATTTCTggcatcaaataaaaaaacttgaatattttaagacattttgtgaatttattttattttttatttttaacaaaatatccttcgtgttaattgttaactgatggattggagtggattacttgtggattattgtgatgtttttatcaccTCTttttccgacggcacccattcaccgcagagcatccgtCGGTAAGCAAGTCATTTCTGCACCAAAATCTGTCCCAAAGAAGAAACAAACGTACATCTCGGATGCCCTGATGGTGAACTACATGATGAAACTCTGTAAAATCTGGTGTCGGCTACTAACTTCGACTCATCTAGACTGTAAAAGGGAAAACACCTAAGTAGTGTTCCAGGATTAAAAGATGTTTAGTTTGTCTGAATGGCCATAAGATGGCGCACTTTCCCTCCCTACAGCTCTTGCAGTCGCTTACTATTAAAAAACTGAACAGCCTGCATCTTTTAACAGCTTTTCTGTGCTTTTTAAGATTCTctcctttaatatttttattatctttcgTGCGATTCAGGTAGCTATATACTTAACCCACGTAGCTCAAATGCGGTTTGGCGTCAccaaacaacattttataactTTTCGGTGTACAGaacgtttaaaaacaaacattgcattttaggtttttgtagtattttactAATCAAATAGCAATTTTGAGACAGTGGCCAAGTTAAATCCTTTTACAGACAGATGTTCTTTTCGGAAGTTTTGTGGCAATCAGAATGAATGCAAGAAAATATACTCGACGTTTACAGAAAAAAGCTCCTTCGTGGAAAACACCTGCTATTCGCATGCTTATTTTAACAGATATGAAGTGAAAGTGCCCTTGAGCTTTAAACAGTTCCTTACCGCTAGTATTTTTGTAACCGAATAGAGAGCACCTTGTTGTGAATGACTAGCAGAGCCAGAGCAAACACTACCACATTATacacaatacagtaaaatgaacGTAAAGTCTAATAAAAACCGCcatacagacaaaaaaacaagcaaacaacaacaaaaacataagttaaatgtattacaatgtCTATAGATGATTGTTATTGCCGCATATGGCACATCCCCAACAAAACCTTCAAGCCTATAAATGGTATAATTTCATTACtttccaaaaaattaaaaattataattttgttttttttaagaaccaTTTACTGCTTTCATGAGCAGTGAGGTCTTTCTGCACACATGTGGATTATGCAGCGCACACTGGATATGTGTGTCTCGTTTTAATATCTGCAGATCAATAATCTGAAAGTCATGTTTTTGCCTGGTCTcgtggcataaatgtacctgggtgcactttgtagcgagacacgaaatacgtaccGACAAGTACATCAGTGCGGTTTCcgaaaagaaatgaacactagaggcaataAAACTCTGGCACCTTTGTCACGCAAATGTACAGTTTGGATTAATAAAGCgtcattttcacaaaattgcTTGAAGAATATCGTGTTATGACTTcgaaacaatattaatattctgagATATCTGAAAACTGACGCTTTTgaccgttagcatcacacacatccagcttcatctctatgggttttcatagacagttttttttttcggtaGCTCACGAAGTACACCTGAGAGCAGAGGAGCTtgaaaaaggaagttgaaatggcaacaaatgtgtttttataattgggtaggtttagggttggatttggtgtagagcattagcttttagaAACAGTGAACGGATATTACCATACTAAACCGTACCTATATCGACGTACTAAAAATGTTCCAGGGGTCATGTATTGAAGCTGCgctttagcgccactcagtgtacatttctctttgaaactgaaaaaaacagtgttgcaccAAAAGTACACAgaggtacgtatttttatgagaccaggttgcttTTTCTCACTCTTGGTCTGGGGACTCGACTTCCCACGCTGCATCTGTGTCCCGGGCTAAAGCAGTGATGTCCTCATACAGATCCGCACCGCCGCACTGCTCGATCTCCA
>XM_043253620.1
CCGGCTGTAGTTTCCGAATCGCGCGCATATAAGCGCCGGGGAGGATGGAGGAGAGACGAGACCTTTCTAAAAGCTGCTTGTGGCATCGCTCTCCTGGAGAACGCGACACGATGGACCTTCGTTTGGTGCAGCTCTGCCTTCTTCTGTCGGCGTGCAGCTTCAGATCTGTACTGAGCTGCAGGTGGATAAAACACAAGTTCCAGCACCACCATGGAGTCTCTTCAGATCTGATCAGAATAATGGGTGAGAAAATCCATAATGACCACGAGGATGTGAACCCAATCCCATATGACCTGATCAATAACCACAGAGGAGCAGAGCCTGAGAAGCAGATCCCTTTCGTCATTCAGGCTCTGCTGGAGATCACGGTCCTCTTCGACGATGCCGTCGTCCCCTGGAATGCTAAAAAGATGGAAGATTTCTTAAACGTGATGCACGAGGAGATCGATGGGCTGCGCTCGTGTGGGGCTTACAAAGCCAAGAGGAACAAAAAGCTGCATCTGTATTTCGAAAGACTGAGACGCATGACAGAAGTGAACGCGGGGGATAAAGATCACAGCTGGGAGATCGTCAGAAAACGGGTCATAAGTTTGATGAACCAGCTGGAGTTCTTCTTCCTCCACACTCGTGGTTAAGAACCGGTCCTCTTGAGGCTTGGCTCCgtttacagaagaaaaaa

Function

GO:

id name namespace
GO:0051607 defense response to virus biological_process
GO:0005576 extracellular region cellular_component
GO:0005126 cytokine receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125427 True 2330 lncRNA 0.36 2 543246 552443
XM_043253620.1 False 679 mRNA 0.51 5 545560 547322

Neighbor

gene id symbol gene type direction distance location
LOC122355758 NA coding downstream 65707 469843 ~ 477539 (-)
LOC122355175 NA coding downstream 98421 439870 ~ 444825 (-)
mapta LOC107598589,LOC107732173,LOC107654024,LOC107664605 coding downstream 108970 407356 ~ 434276 (-)
brsk1a si:ch211-255p10.4,LOC107598587,LOC107732176,LOC108441159,LOC108273514,LOC107654020,LOC107557374,LOC103033508,LOC108427376,LOC107658484,LOC107548343 coding downstream 162079 363606 ~ 381167 (-)
irf3 NA coding downstream 204253 333577 ~ 338993 (-)
rbp4 rbp4,LOC107743953,LOC107664626,LOC107598599,LOC107557363,LOC107653948 coding upstream 71468 623911 ~ 626522 (-)
fra10ac1 fra10ac1,LOC107664625,LOC107654038,LOC107708941,LOC107557362,LOC107743956 coding upstream 88428 640871 ~ 650188 (-)
noc3l noc3l,LOC107664623,LOC107654039,LOC107743960 coding upstream 184205 736648 ~ 745103 (-)
tbc1d12b LOC107743959,LOC107654040,LOC107708937,LOC107664632 coding upstream 193824 746267 ~ 762604 (-)
LOC122355750 LOC107654041 coding upstream 226058 778501 ~ 797724 (-)
G84547 NA non-coding downstream 64815 478023 ~ 478431 (-)
LOC122355423 NA non-coding downstream 156789 385889 ~ 386457 (-)
LOC122355197 NA non-coding downstream 158224 382572 ~ 385022 (-)
LOC122355220 LOC107561990,LOC107660458 non-coding downstream 344379 197400 ~ 198867 (-)
LOC122355221 LOC107561990,LOC107660458 non-coding downstream 345853 196901 ~ 197393 (-)
G84654 NA non-coding upstream 57624 610067 ~ 611847 (-)
G84666 slc35g1,si:ch211-197g18.2,LOC107598601,LOC107654036,LOC107664634,LOC107664593,LOC107557359,LOC107708939 non-coding upstream 107646 660089 ~ 663746 (-)
G84700 NA non-coding upstream 207482 759925 ~ 789003 (-)
LOC122355303 NA non-coding upstream 214211 766654 ~ 769898 (-)
LOC122355070 NA non-coding upstream 394584 947027 ~ 979785 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other downstream 43027 496964 ~ 500219 (-)
LOC122355759 NA other downstream 52867 484438 ~ 490379 (-)
prr12a prr12a,LOC107708947,LOC107664611,LOC107598586,LOC107654018,LOC107732166 other downstream 182764 340273 ~ 360482 (-)
G84521 NA other downstream 221986 319330 ~ 321260 (-)
LOC122355191 dusp3b,LOC107753093,LOC107590411,LOC107688089,LOC107709997 other downstream 371951 168048 ~ 171295 (-)
dlx4b dlx4b,LOC107739765,LOC107557342,LOC107708902 other upstream 337267 889710 ~ 897517 (-)
ank3b ank3b,LOC107654059,LOC107695539 other upstream 1261640 1814083 ~ 1947412 (-)
jmjd1cb jmjd1c,LOC107745648,LOC107654065,LOC107695544 other upstream 1621545 2173988 ~ 2285052 (-)
G85232 LOC107663296,LOC107583514,LOC107733536 other upstream 2215465 2767908 ~ 2781353 (-)
LOC122355711 rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117 other upstream 2537186 3089629 ~ 3103315 (-)

Expression


Co-expression Network