G1509


Basic Information

Item Value
gene id G1509
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 2591137 ~ 2595445 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU1705
GGGTCAGGTTCAAAGTGGGCTGCGCTCTGGGATTCGTATCGCTCAGGGCAGCTATATTCGCATCACTGTGACCAAACCCATTCCAGTGCAGGTGGATGGGGAACCCTGGATACAATCACCCGGACAGATCATCATCTCAGCCGCGGGACCAAAGGTGTGCATGTTAAGAAAGTCCAAAACCAAGCAGAAGAAACAATCCGGCAGTTTGAAGGAAGGCCGTTCCGACAGTCCAGCTCCCAGTGATGGTGGGCAGTGACAAACCGCACAAACACTTCATTGACAGCCCTTTACTGTCGCCTTGACAACTTTTCTTTGAGTCTTTCCTCTGTCCTTTGTTTCACTTTGGGTGGGTTTCAACATTGACTTTAGCTGAACTAGAATGTATTACACAGACATCTCTAACATCTCATAGTCTGTAGTGTTCAAACGCCCCATCAGATGATAGCACTGCAGTCTGTTTCTCAGGACTTTAGCTGCCCTCAGCCTGTTTCTGGCCTGTTTTTGCCTTAGATTCATACTGGTGTAGATATTTTTGTTGGTTTTATTTCGATTGCCAATCTGCATCTTCTTTTAAAAAGGGAATATTGTCTTAAAGTAGTCCATCACTGAAATGCTATGGCACATTTGAGCGAGCAACCAGTATTTATGCACATTGTGCGCATCACAAATGCCAAAAACTACCGTTTCCTGAACATCGCCAAGTTAAGTCTATCACTTAATACTCGCATCTTGCTTATGATGGCAGCCTTTTTGGTTTATGGTAAAAACTGTGACTCACCGACCTTCATCTGGTCATTTTTCGTTTCTATGATGATTATCGTAAATGTCTTACTTGAAGTTTATTTGCAATAGCAGCCCCTAGTAGCTTTCTACAAGTATCTGAACCAAAACAATGCAGTATATATGTACAAACAACTCTAGTTCTTGTTCATTAATAGCACATTTGAATGTGTAAATGTGGAGAGATAATCGTCTTTGTATATCAATTTTCTAGCTTTCTTAGCTGTGAGACCGTAGGCGCAATCGTGCCTCACCAAAACGTGAGTAAACAATCTGGTGTCATCACAGCCGTTTTGTAAAAGAGGAATGAATATCAATAGATTTTCGAACAGGAGCGGTACCGAAAATACTGTGAAATCGTTTAAAAGAGTCGTGGATTTTACGAAGGATGAATGTTTGTAAATTCCCTGCGATGTTTGTAGACACTTTTAGTGTTAATAGTAATATAATGCTGTACGATACTTGATAAAACATTCCACGCAAGATCACGTAGCATTTTCGGTATTTATAGTGTAACTGGTCATATGAACCTTTAAGCCAAGCGTAGCTTCATCATGTTCTGGTGAAAGCATTGATTTGTAAGTAAATTAATATGTTACTGTTATCTGACATAGTAGACAGTCGTGTAAAGCTACTCGTCCTGTTGTAAAACTAAAGCTAGAGGCGAGCGCAGTGCTGTAATATATATTTGCTAGTAAGTAAGTGGCGTTTATATGTTGTTTCTGTACAGTGACTGGTCAGCCCTCCTCCTCCAGTGGTATGGATTCATGAGGCTGGCCTTAGATTTTGTATGTATGATCAATTAGACGCTCCACTTCCCATCAGGCATGCATTATTGCCAGGCTGTTGCAGGGCGCAGCCTCAGCCACCTACGGGGGGCAACTGTCTTACCTCATCTACCTCGTCTCACCGGCACACATCACTCCGAGAATCAAGTTCCGCCAAGCTCTTCCAAAGACTTGCGCCTGCTTTTCTTCCTGCACTTCATGGATCATGTCTGGGAATGATGACGAATATGAAAATCTGACCAAGTGCATTTGATCTTATATAGTATGACCAATGGTTTAGGTCGCATTGTCATTTTTCTTCAGAATATGCTATCTTATCTCGCCAATTCGCCCTCTCTCGTGTCGTTCATTTGCCAGAAGTGTGTACAGTGGTGATTTCTGCATTAGTTGTGCCTGTTGCCATGACAACCCTCGGGTTAACGTGCTGTTCTGTGGTGTGGTTTGGCCCGAGCTCTGCGTATAGTGCCTCATATAAGTGCTTCAAGAACTTCTGCAGTTTTGCCGTACGTGTGCGTTTAACTCCATGCCGTTCTGCTGGTTCAGTGACTATGAAGTAGAACCGTGCTATTCTAGGTCCTTTAGAGCTGATGTGCCTCCTAATAGGGTAAATCTCACGAAAATGAGTCACATATTAGCCCAAAAATCAAATTACCACAAAAAAAGTCAAAATTCTTTGCATTTTGACTTTTTTTTTTCCATGACAATTAAGGATATTTTTTTTACCCCAACTCTCCAATGCATTTGGAATTGTTTTTTTTTCTTTTTCTTTTGTAATACGCATAATTCCCACTGGTTATTGTCATTAGATTCTCCTTAGTGTAGATGCTTTTTTTTTTTTTTTATGATTTTGAAAAACTTACAGTTGGAATTTTTATTTATTTGTGTTAATTAAAGGCAGTACAACAATGACTACAGTTGTGTATAAATACTTGACAGTATCATGAAAATAACATCAAAATATCTTTAAGCATTTCTTTTGATTTTGGGATGAAATATGACCTGGACATGATCTTGACAGGTTTCGTGAGATTCACCCAATAACTTTGTTTGGTCAAAACTGTTTAAAGTTATTTTACCTCCTTGTGTTATTAAAGTTTTATTCTTACTTCTTGTAAAGTGGGTTAGAATTAATGTTCTGAGATCTATATAGATGTATATTTTTGGAGATAAAATGTTTTTAATTTGGTCTGTAAAGATATTGCACTGATTGTACTGTTTTAAAGATGTTTTTAAGTGTACATTGTGTTTAATGAATATCAAATAACTAAATGTATAGATATATCAAAAAGGTGTATAACAGATGGATGTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU1705 True 2878 lncRNA 0.48 2 2591137 2595445

Neighbor

gene id symbol gene type direction distance location
CI01000000_02586043_02587730 DGKQ coding upstream 3338 2586043 ~ 2587799 (+)
CI01000000_02571143_02579505 NA coding upstream 11632 2571143 ~ 2579505 (+)
CI01000000_02553141_02553901 NA coding upstream 36988 2552775 ~ 2554149 (+)
CI01000000_02534790_02541012 NA coding upstream 50114 2534790 ~ 2541023 (+)
CI01000000_02516813_02517287 NA coding upstream 73350 2516813 ~ 2517787 (+)
CI01000000_02608926_02617589 ABHD18 coding downstream 13481 2608926 ~ 2617965 (+)
CI01000000_02622249_02636433 FAM193B coding downstream 26492 2621937 ~ 2636482 (+)
CI01000000_02639274_02651177 DDX41 coding downstream 43829 2639274 ~ 2651578 (+)
CI01000000_02652927_02658258 NA coding downstream 57482 2652927 ~ 2658294 (+)
CI01000000_02660983_02661759 NA coding downstream 65538 2660983 ~ 2661871 (+)
CI01000000_02334112_02352906 NA non-coding upstream 237768 2333555 ~ 2353369 (+)
G1475 NA non-coding upstream 241472 2348793 ~ 2349665 (+)
G1470 NA non-coding upstream 284472 2306406 ~ 2306665 (+)
G1448 NA non-coding upstream 312497 2278390 ~ 2278640 (+)
G1439 NA non-coding upstream 322541 2268384 ~ 2268596 (+)
G1604 NA non-coding downstream 104229 2699674 ~ 2699896 (+)
G1617 NA non-coding downstream 166896 2762341 ~ 2762558 (+)
G1645 NA non-coding downstream 232926 2828371 ~ 2828613 (+)
G1661 NA non-coding downstream 283146 2878591 ~ 2878870 (+)
G579 NA other upstream 682329 1767917 ~ 1908808 (+)
G435 NA other upstream 1158283 1425121 ~ 1432854 (+)
G350 NA other upstream 1914200 671842 ~ 676937 (+)
G252 NA other upstream 2084065 503209 ~ 507072 (+)
G2774 NA other downstream 1858333 4453778 ~ 4454232 (+)
G2850 NA other downstream 2130541 4725986 ~ 4726482 (+)
G6811 NA other downstream 7609386 10204831 ~ 10321679 (+)
G6820 NA other downstream 7831778 10427223 ~ 10433018 (+)
G7018 NA other downstream 8383044 10978489 ~ 10980872 (+)

Expression


Co-expression Network