dlx4b (dlx4b,LOC107739765,LOC107557342,LOC107708902)


Basic Information

Item Value
gene id dlx4b
gene name dlx4b,LOC107739765,LOC107557342,LOC107708902
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 889710 ~ 897517 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU125629
TCTCTTCGCGGGCGGTTAGCTCCGAATCGTTTACGCAAAGGTCGCGTTAAAATTCGAAGATCGTTATTACGCGACGTGATCGATATCAGAGCTCGGCATAATTCGATAGCAAATGCTCATCAACTTCATTTAGCTCTCCCCGGTGTCGAGTGACACACCAATCAGCGCGCGCTCTCGCGGAGCGCGAGTCAGTCAGAAGCACGCAGGACCGCGAGCCCGAGGTGACTCCGATATTGCGCGGTTTAAAATCGCGTTGGTCTGTGAGATTCGATGCGGTGCGGCTTTTTTTAGGAAATACCTATTCGATCCCTATCTCGCGGCCGTTTCTTTTATCCCTGATTATTTTGGGATGGATCCGGTTCGAGCTCTTTTCGGTGCGCGGTGAACGTTCAATGCAGCACTCGGACCATCATCGGGCTTTATGGACTTGACCGTTAATGATGTCTATGGGTTTCATGTCTGATACGCTGAATAGTCCAGATCCTTCCAAATCGGCGTTTTTAGAGTTCGGCCACGGGCTTGCGAGCAACCAGCAGCATTTATCCGGATTCGCGCACAACCTTTACCCGGTTCATGGATTGCACTCCGGCGGACACCTCCAGCACGACGCTCCCTATCCTTCCAGCGCGTCCCATTACAGCCGGCCGCTGGGATACGCCTACCCCGGGCCGGTGAGCGCTCCCGCTGCGGGCGCCTACGTGCCTTACCAGCCAAACAACCACAGCAGCGCTCTGGCGCACGCGAGGGCCGAGGAGACGAGTGAAAATATGGTTTCAAAACAAGCGCTCCAAGTATAAGAAGATCATGAAGCACGGCTCCAGTGGACCTGAAGGGGAGCTGCTTCACACCACCTCCTCGTCCTCTCCATGCTCTCCGGGTCTCTCTCAGCTCTGGGAGGTCTCTATGGCCAACAAAGTGCCACCCATGCATCCCAGCAGTTATATGAACAATTACGGGCACTGGTATCCCCCGCACCACCAGGATCCTGCGCCCAGACCTCAGATGATGTGATTAAAATCGGAAACGCAGAGCCAGAGAGACTCTAACCCgtgaaggttttttttcctttacggTCTTCATATGTGTTTTATTGCTTAGTGTGTTTGAAAGGACTGTGTTTTCCTCCCCCTGACTCCCCCCATATTACACTTCAGTAGCTTTTCGACCTTTTCAGATCTTTTACAATGTGCTTGAAATAAAGGATTTATGAAAGGACGAAAATGTTATGAATGATTTATAgaaattttgatatttatttttttttacgtaaatTGTAAGGTCCTGGCGCGTTCGCGTGGTGTGTATAGCCTATTTAAAACGATCttgttttacaataatattgttattaataaacgCGAGTGAAATAGATCTATAAAGGCCCCTAAATTAGCCTTCTGGAATACATTTTTGAGATTAAACGAAGCTGCCAAAATACGTTATTACGCCAATGTTATGAATtcatcattaataaattaatccaCAGATGTTCACTCAGCGTCCGACTTCTAGAcattttcgtttttgtttttttgggggggggttttTACGTTGTCAAAGTGTGGGAAAACTAGGTTGagatttatgaattatttatgatCAAGGCACACGGATGTAAGATGATCTGCTTTTCTATTCgactatattttttttagatacagGCTATAGGCAGg
>XM_043253023.1
tgtttgttttgaacgGAGGATttttagaaagttttttttttctaagcaaTCACTGCCAGCAGCTACAAACTGATTTCAATAAACACGAAGAAAGATCGCGTAATCATTTCAACAAGACATGCCATAattcaaggatgcattaatatATACGTGCGTTAATTTTTTGAATAGACGTTTTGTGTTTGTGGTCGTTAAATTTCACGTtgaatgtcatttttacataattcatttatttatattattaatataatatttaacgaTCAAGCCGTACAGTGAGACGCCATGCTCCTGTCATTTTGTGACAAATGTACTCATTTTTCTAATCTTTCTAATGACTAATAATTGTGAAAAGGCCCAATGTCTTTTTAATTACAGATATTTCGATTAAAAAGAGCAATAACTAGCCCGCACCGCATGCAGGCGACCGGCTGTAAAAGTTGCACCGCgttgagagattttttttttttgcctgtaaaTGTGTCGCAGATCTCTTCGCGGGCGGTTAGCTCCGAATCGTTTACGCAAAGGTCGCGTTAAAATTCGAAGATCGTTATTACGCGACGTGATCGATATCAGAGCTCGGCATAATTCGATAGCAAATGCTCATCAACTTCATTTAGCTCTCCCCGGTGTCGAGTGACACACCAATCAGCGCGCGCTCTCGCGGAGCGCGAGTCAGTCAGAAGCACGCAGGACCGCGAGCCCGAGGTGACTCCGATATTGCGCGGTTTAAAATCGCGTTGGTCTGTGAGATTCGATGCGGTGCGGCTTTTTTTAGGAAATACCTATTCGATCCCTATCTCGCGGCCGTTTCTTTTATCCCTGATTATTTTGGGATGGATCCGGTTCGAGCTCTTTTCGGTGCGCGGTGAACGTTCAATGCAGCACTCGGACCATCATCGGGCTTTATGGACTTGACCGTTAATGATGTCTATGGGTTTCATGTCTGATACGCTGAATAGTCCAGATCCTTCCAAATCGGCGTTTTTAGAGTTCGGCCACGGGCTTGCGAGCAACCAGCAGCATTTATCCGGATTCGCGCACAACCTTTACCCGGTTCATGGATTGCACTCCGGCGGACACCTCCAGCACGACGCTCCCTATCCTTCCAGCGCGTCCCATTACAGCCGGCCGCTGGGATACGCCTACCCCGGGCCGGTGAGCGCTCCCGCTGCGGGCGCCTACGTGCCTTACCAGCCAAACAACCACAGCAGCGCTCTGGCGCACGCGAGGGCCGAGGAGACGAACCACGAAAAGCCAGCGGTCATTGAGAATGGTGAAATTCGCCTTAATGGCAAGGGGAAGAAGATCCGCAAACCGCGAACCATTTACTCCAGCGTTCAGCTGCAGGCGCTGCACCAGCGCTTCCAGCAGACCCAGTACCTCGCGCTGCCCGAGCGCGCGGACCTCGCCGCGAAACTGGGCCTGACGCAGACGCAGGTGAAAATATGGTTTCAAAACAAGCGCTCCAAGTATAAGAAGATCATGAAGCACGGCTCCAGTGGACCTGAAGGGGAGCTGCTTCACACCACCTCCTCGTCCTCTCCATGCTCTCCGGGTCTCTCTCAGCTCTGGGAGGTCTCTATGGCCAACAAAGTGCCACCCATGCATCCCAGCAGTTATATGAACAATTACGGGCACTGGTATCCCCCGCACCACCAGGATCCTGCGCCCAGACCTCAGATGATGTGATTAAAATCGGAAACGCAGAGCCAGAGAGACTCTAACCCgtgaaggttttttttcctttacggTCTTCATATGTGTTTTATTGCTTAGTGTGTTTGAAAGGACTGTGTTTTCCTCCCCCTGACTCCCCCCATATTACACTTCAGTAGCTTTTCGACCTTTTCAGATCTTTTACAATGTGCTTGAAATAAAGGATTTATGAAAGGACGAAAATGTTATGAATGATTTATAgaaattttgatatttatttttttttacgtaaatTGTAAGGTCCTGGCGCGTTCGCGTGGTGTGTATAGCCTATTTAAAACGATCttgttttacaataatattgttattaataaacgCGAGTGAAATAGATCTATAAAGGCCCCTAAATTAGCCTTCTGGAATACATTTTTGAGATTAAACGAAGCTGCCAAAATACGTTATTACGCCAATGTTATGAATtcatcattaataaattaatccaCAGATGTTCACTCAGCGTCCGACTTCTAGAcattttcgtttttgtttttttgggggggggttttTACGTTGTCAAAGTGTGGGAAAACTAGGTTGagatttatgaattatttatgatCAAGGCACACGGATGTAAGATGATCTGCTTTTCTATTCgactatattttttttagatacagGCTATAGGCAGgcctatatatatttatatatatataaaaaaagaaaaagtaaagcaCGCTATTTGTCGAGTTctgttcttattttaatttaaatatgaatgaaattgtgacttgttataaataaatctagATTTCTGATGTTACCTACTAAAAATAGCGTTACGTAAAACGCTGCATCCATAAGcgaaagtacacacacacacacacacacacatccttcaAATCAACAGGGTCCGacttaaataaatgtcattttgaaaatatttagaaatgttgccaATGTAATCGTTCGCGCGCGCAGCTGCTAGATTAACCAGCGATTGAATTATGAATAACCGACAACAATTACATGCTCAGTGATGCAGAAAGGTTCGATTTTTAAGTCAAATACCCGTAATATCTTATTGAGTCAGaatcatacaaatatataaatacgcgGCTAGTTATCGAATCTCAAGACGCTTGTAACAAATTAGTAAACATCTGCTTTTGTTCTCCTGCTTTCTTTCTGaagtaatgataaaataattcaaagcaCTGATTGAGTTGATGTCGTGATGCCACCATGATAAATCACCGCAGTATATAATCAAATGCAGGAGAGAAAACATAATTAAACGTGCATTTCGGCGCTTAAACTGTCTAAATACCGCGAACAAGATGTTTGTGTTGCATACGCATCCCAAATTACGCTGATGCTCATTTAATGCGATTCACCATGATTTATGGCGTGCTTATTCCCGCCGTGGTTATTTACCAGGAGATGTTcgtatgcatgcattttgaggccaaaaaaaaaaaaacaacaaaaaacgcGACGCGTCTTTTTGTTATTTAGGGTTCTCGCGTAGAAGTTCCATTTTTGGTTCCTCAAAGAGTGAAcggtttttaaaaatagctattttttaGGCTATGCGAGTCTACATGCGAGCTTTAAGCCTTTTTGCGAAGCGAAAACCCATGGTGTCACAAACGGTCTCAAAATAAAGGGTGCAGATGTTGCTCTGGTAACAAGATGCCACCTGGAGAATGCAGGGTCCACTTGACCTGACTTTGACCCAGCTCACTCAACAGGGTCTTGTCTAAACAGCCTTGTTCAAACAGGCATATTACAAAGCATCTCTGTCGTTTCAAACTCCTCGCATCCAACGCCATCCAGCACAGTGTGGGcctttttccttcattttaatCGTTCACATTAGATCGCCGAGTGGGTTTTATTATACAGCCTGTCATAAGATAAAATAATGCCTGCCACATGCCACTCTCATGCACGGaacaataatgacaaaattctCCCGAAACCTTTTCGCTGCATGAAACTTTTAATATCATGTGCAATAATGCACGTTTATGAGCCTCCACGACATTTGTGGGAGATTTACTGCGATGACTCCGCGGTCCCACgatccttttttttcttactcgTTTAGT

Function

symbol description
dlx4b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including embryonic viscerocranium morphogenesis; sensory organ development; and trigeminal nerve development. Predicted to be located in nucleus. Is expressed in several structures, including apical ectodermal ridge pectoral fin bud; ectoderm; nervous system; pharyngeal arch; and splanchnocranium. Human ortholog(s) of this gene implicated in orofacial cleft 15. Orthologous to human DLX4 (distal-less homeobox 4).

NR:

description
PREDICTED: homeobox protein Dlx4b-like

GO:

id name namespace
GO:0021559 trigeminal nerve development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035270 endocrine system development biological_process
GO:0043010 camera-type eye development biological_process
GO:0043049 otic placode formation biological_process
GO:0048666 neuron development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K18488 DLX2; homeobox protein DLX2

RNA

RNA id representative length rna type GC content exon number start site end site
TU125629 False 1670 TUCP 0.47 2 891132 897030
XM_043253023.1 True 3773 mRNA 0.43 3 889710 897517

Neighbor

gene id symbol gene type direction distance location
itga3b itga3,itga3b,LOC107708875,LOC107664597,LOC107557321 coding downstream 21833 837814 ~ 867877 (-)
abi3b abi3b,LOC107654042,LOC107598650,LOC107743966,LOC107664617,LOC107708878 coding downstream 86908 798821 ~ 802802 (-)
LOC122355750 LOC107654041 coding downstream 91986 778501 ~ 797724 (-)
tbc1d12b LOC107743959,LOC107654040,LOC107708937,LOC107664632 coding downstream 127106 746267 ~ 762604 (-)
noc3l noc3l,LOC107664623,LOC107654039,LOC107743960 coding downstream 144607 736648 ~ 745103 (-)
kat7b kat7b,kat7,LOC107598609,LOC107739754,LOC107708935,LOC107654043,LOC108443263 coding upstream 85483 983000 ~ 990248 (-)
g6pc1a.1 LOC107654044,LOC107598610,LOC107739755,LOC107708934,LOC107695523 coding upstream 101670 999187 ~ 1005075 (-)
aarsd1 aarsd1,LOC107739756,LOC107695514,LOC107708900,LOC107598654 coding upstream 112470 1009987 ~ 1017230 (-)
a1cf a1cf,LOC107654048,LOC107739758,LOC107695528,LOC107708930 coding upstream 147899 1045416 ~ 1056434 (-)
pcdh15b pcdh15b,pcdh15,LOC107654051,LOC107695531,LOC106578947,LOC106589399 coding upstream 319910 1217427 ~ 1374084 (-)
G84700 NA non-coding downstream 100707 759925 ~ 789003 (-)
LOC122355303 NA non-coding downstream 119812 766654 ~ 769898 (-)
G84666 slc35g1,si:ch211-197g18.2,LOC107598601,LOC107654036,LOC107664634,LOC107664593,LOC107557359,LOC107708939 non-coding downstream 225964 660089 ~ 663746 (-)
G84654 NA non-coding downstream 277863 610067 ~ 611847 (-)
G84547 NA non-coding downstream 411279 478023 ~ 478431 (-)
LOC122355070 NA non-coding upstream 49510 947027 ~ 979785 (-)
G84793 prkg1,prkg1b,LOC107695529,LOC107654050 non-coding upstream 167416 1064933 ~ 1065345 (-)
LOC122355531 NA non-coding upstream 251422 1148939 ~ 1172741 (-)
G84795 NA non-coding upstream 263581 1161098 ~ 1182132 (-)
G84804 NA non-coding upstream 281018 1178535 ~ 1179376 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other downstream 337267 543246 ~ 552443 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other downstream 389491 496964 ~ 500219 (-)
LOC122355759 NA other downstream 399331 484438 ~ 490379 (-)
prr12a prr12a,LOC107708947,LOC107664611,LOC107598586,LOC107654018,LOC107732166 other downstream 529228 340273 ~ 360482 (-)
G84521 NA other downstream 568450 319330 ~ 321260 (-)
ank3b ank3b,LOC107654059,LOC107695539 other upstream 916566 1814083 ~ 1947412 (-)
jmjd1cb jmjd1c,LOC107745648,LOC107654065,LOC107695544 other upstream 1276471 2173988 ~ 2285052 (-)
G85232 LOC107663296,LOC107583514,LOC107733536 other upstream 1870391 2767908 ~ 2781353 (-)
LOC122355711 rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117 other upstream 2192112 3089629 ~ 3103315 (-)
G85366 NA other upstream 2361014 3258531 ~ 3299688 (-)

Expression


Co-expression Network