G84892


Basic Information

Item Value
gene id G84892
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 1649461 ~ 1650134 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU125824
GTGAGGGGGATACCTGGATTTTGTCTGCTGATGGTGGGATGCATCTCTTTCACATATGTCATGTATGCTGTCATGGGTCTCTTAGGAGGGCCCCCGGTTGTGGTGCTAAAACTCTTTAACACTGGAGCCACACATGAACCTCACAACAGATGCACTGGAGAACAACCCCAAAGACTTTACCAAAAGATTAGCACCGACTGACATCAAACCGAACGGAGCCATCATACACGTGCTGCTATCTTCCCGATAAaacgatttaaaaatgtaatacccAATGTGAGAGGGAAATGCACGATAGCTGTCTTGAAATGAATGTTATGGTTGAGAATTACAGTTCCACCTCCTCGAGTAAAGGCGCCATTCCATCTGCG

Function

GO:

id name namespace
GO:0002253 activation of immune response biological_process
GO:0002376 immune system process biological_process

KEGG:

id description
ko05150 Staphylococcus aureus infection
ko05144 Malaria

RNA

RNA id representative length rna type GC content exon number start site end site
TU125824 True 371 lncRNA 0.46 2 1649461 1650134

Neighbor

gene id symbol gene type direction distance location
ube2d1b ube2d1b,ube2d1,LOC105891213,LOC107717106,LOC106607701,LOC107553913,LOC107733527 coding downstream 699 1642834 ~ 1648762 (-)
ipmkb ipmk,ipmkb,LOC107746459,LOC107654052,LOC107708928,LOC107695532 coding downstream 7464 1628163 ~ 1641997 (-)
pcdh15b pcdh15b,pcdh15,LOC107654051,LOC107695531,LOC106578947,LOC106589399 coding downstream 275377 1217427 ~ 1374084 (-)
a1cf a1cf,LOC107654048,LOC107739758,LOC107695528,LOC107708930 coding downstream 593027 1045416 ~ 1056434 (-)
aarsd1 aarsd1,LOC107739756,LOC107695514,LOC107708900,LOC107598654 coding downstream 632231 1009987 ~ 1017230 (-)
zgc:171971 zgc:171971,LOC107695535,LOC107596590 coding upstream 2315 1652449 ~ 1658747 (-)
fam13c fam13c,LOC107654055,LOC107727053,LOC107596592,LOC107695537,LOC107746461 coding upstream 111664 1761798 ~ 1774365 (-)
slc16a9b slc16a9b,slc16a9,LOC107654057,LOC107596608,LOC107727058,LOC107695515,LOC107746460 coding upstream 139875 1790009 ~ 1796994 (-)
ccdc6b ccdc6b,ccdc6,LOC107695538,LOC107654058,LOC107746455,LOC107727062 coding upstream 147924 1798058 ~ 1813172 (-)
tmem26b tmem26,tmem26b,LOC107695511,LOC107745662 coding upstream 324636 1974770 ~ 1977715 (-)
G84884 NA non-coding downstream 21425 1626295 ~ 1628036 (-)
G84885 NA non-coding downstream 44662 1599857 ~ 1604799 (-)
G84882 NA non-coding downstream 63511 1585749 ~ 1585950 (-)
LOC122355293 NA non-coding downstream 102967 1545553 ~ 1546494 (-)
G84795 NA non-coding downstream 467329 1161098 ~ 1182132 (-)
LOC122355537 NA non-coding upstream 60364 1710498 ~ 1737269 (-)
G84909 NA non-coding upstream 76972 1727106 ~ 1729422 (-)
G84919 NA non-coding upstream 101268 1751402 ~ 1754571 (-)
G84928 rhobtb1,LOC107654062,LOC107727061,LOC107745661,LOC107695540 non-coding upstream 314852 1964986 ~ 1969050 (-)
G84956 NA non-coding upstream 351200 2001334 ~ 2001636 (-)
dlx4b dlx4b,LOC107739765,LOC107557342,LOC107708902 other downstream 751944 889710 ~ 897517 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other downstream 1097018 543246 ~ 552443 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other downstream 1149242 496964 ~ 500219 (-)
LOC122355759 NA other downstream 1159082 484438 ~ 490379 (-)
prr12a prr12a,LOC107708947,LOC107664611,LOC107598586,LOC107654018,LOC107732166 other downstream 1288979 340273 ~ 360482 (-)
ank3b ank3b,LOC107654059,LOC107695539 other upstream 163949 1814083 ~ 1947412 (-)
jmjd1cb jmjd1c,LOC107745648,LOC107654065,LOC107695544 other upstream 523854 2173988 ~ 2285052 (-)
G85232 LOC107663296,LOC107583514,LOC107733536 other upstream 1117774 2767908 ~ 2781353 (-)
LOC122355711 rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117 other upstream 1439495 3089629 ~ 3103315 (-)
G85366 NA other upstream 1608397 3258531 ~ 3299688 (-)

Expression


Co-expression Network