G85173


Basic Information

Item Value
gene id G85173
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 2482247 ~ 2483927 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU126187
ATCAAAGGGCTGAGCGGTGACCTTTGAGATGGCCTGACTCAGCTTGTTTGTAGCGTTGGAGCCTCTCTTGACATGAGGTCCTGCTCCAAGCACATGCTGCAGTATGCTGAATGCAGTGGCTTCAGCTGATGTTGCACCTGCGCCTTCGCTCGCCACAACCGCATGAACCAGTCCTCCTCCGGACTGATGCCTCAGCACCTCCCCGGTACACGGCTTTGGAACCAACAGTGCCTGTCCCACTGCGGATGTTCAGGAATTGCTCCCCAACCTGCTTAAGCATGGCATGATCCAC

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0006941 striated muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

RNA

RNA id representative length rna type GC content exon number start site end site
TU126187 True 292 lncRNA 0.56 2 2482247 2483927

Neighbor

gene id symbol gene type direction distance location
snu13b snu13b,nh2l1,snu13,LOC105898651,LOC105031476,LOC106589607,LOC105910236 coding downstream 5851 2474996 ~ 2476396 (-)
crym crym,LOC107745653,LOC107569187,LOC107753321,LOC107684776 coding downstream 8677 2470023 ~ 2473570 (-)
LOC122355817 LOC107695513,LOC107739060,LOC107653963,LOC107745680,LOC107593524,LOC101884976,LOC107579057 coding downstream 79562 2398531 ~ 2402685 (-)
adam8b LOC107654071,LOC107745666,LOC107739052,LOC107695548,LOC107596597,LOC107593516 coding downstream 89347 2381934 ~ 2392900 (-)
exoc6 exoc6,LOC107654070,LOC107695547 coding downstream 101838 2338676 ~ 2380409 (-)
trnal-uag_3 NA coding upstream 9783 2493710 ~ 2493791 (-)
psmc5 psmc5,LOC107745657,LOC107753303,LOC107684752 coding upstream 97131 2581058 ~ 2585819 (-)
smarcd2 smarcd2,LOC107684754,LOC107569192,LOC107560559,LOC107694073,LOC107753305 coding upstream 103817 2587744 ~ 2596891 (-)
atxn7l3b si:dkeyp-118b1.2,LOC107694074,LOC107745658,LOC107684755,LOC105909120 coding upstream 113969 2597896 ~ 2603692 (-)
slc4a1b slc4a1b,LOC107569191,LOC107684772,LOC107753326,LOC108410807 coding upstream 121204 2605131 ~ 2616287 (-)
G85119 NA non-coding downstream 170776 2311243 ~ 2311471 (-)
G85116 NA non-coding downstream 173214 2306892 ~ 2309033 (-)
G84956 NA non-coding downstream 480611 2001334 ~ 2001636 (-)
G84928 rhobtb1,LOC107654062,LOC107727061,LOC107745661,LOC107695540 non-coding downstream 513197 1964986 ~ 1969050 (-)
G84919 NA non-coding downstream 727676 1751402 ~ 1754571 (-)
G85174 NA non-coding upstream 1267 2485194 ~ 2486204 (-)
G85177 NA non-coding upstream 22251 2506178 ~ 2507961 (-)
G85165 LOC107745672,LOC106958681,LOC103481982 non-coding upstream 89384 2573311 ~ 2576906 (-)
G85214 NA non-coding upstream 194795 2678722 ~ 2679291 (-)
G85216 NA non-coding upstream 196117 2680044 ~ 2680317 (-)
jmjd1cb jmjd1c,LOC107745648,LOC107654065,LOC107695544 other downstream 197195 2173988 ~ 2285052 (-)
ank3b ank3b,LOC107654059,LOC107695539 other downstream 534835 1814083 ~ 1947412 (-)
dlx4b dlx4b,LOC107739765,LOC107557342,LOC107708902 other downstream 1584730 889710 ~ 897517 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other downstream 1929804 543246 ~ 552443 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other downstream 1982028 496964 ~ 500219 (-)
G85232 LOC107663296,LOC107583514,LOC107733536 other upstream 283981 2767908 ~ 2781353 (-)
LOC122355711 rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117 other upstream 605702 3089629 ~ 3103315 (-)
G85366 NA other upstream 774604 3258531 ~ 3299688 (-)
kcnh6b LOC107684759,LOC107753307,LOC107573422 other upstream 1733477 4217404 ~ 4230039 (-)
LOC122355775 NA other upstream 1813940 4297867 ~ 4305215 (-)

Expression


Co-expression Network