G85248 (LOC107581964,LOC107732308,LOC107692781,LOC107697371,LOC107587198,LOC107707128)


Basic Information

Item Value
gene id G85248
gene name LOC107581964,LOC107732308,LOC107692781,LOC107697371,LOC107587198,LOC107707128
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 2869163 ~ 2871748 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU126301
atattcagtGTTTAAACATGTCTGCAATGACAATCTGTCACAGAGTCCATGTCCCATTAGCATAAGCATgcaaaataagaagaaaaaaaatatttttgtaacctGGTGATATTACAACAGtttatacattaacattaaataggGATTAGCGTTCTGTTTGGCTGCCTTTCAAGtacagaaattaaatgaaagaaaaatacgACCAACAGATTAATTAAGAATGATCATACAAATGTTTTACACAAGCAATTAATTACGGTTCATTATAGCAAAATGAGcgtaaattatgaaaatataatttgtcaTCTGTAAACCTGTGAAATACATTGCATTAAGAGAGGTCAGTCTAAAAGGAGGAGTGAAACGCAAATTAAGTTATCCATTTTCTCACAACGGGCAGCTCTACGTCTGTTTCTTTGTAAACATTTCAACAATGTCTATAAATGATGTCACAAATAGTAACTACCTACAATATATGACTACATGTTAAGAAAATGATAGAAAGNAAAAAGGAAATTTGCATTGGGACCCAAAATATGCATACTATTTGCACAATACAgtacattgtttaaaatgagtAGCTATGGAAAATATGATAAAATCCAGCACAGAGGTCATACGGTGGACTTTTCTTAAATAGCAAAGTtcaacaaatacacacaaagagaagaaaaattaCACTGTCTAAGAACAGTGAAGACGAACTGAGATAAAGGagtaaaacagataaataacaaaacacaacCTACACCCACAAAATGACACTGCtttcatcataaaataaaaactagttaccatttataaacaaagcatttatgtttaagaaaaaaaaaatacagtagctGACCAAATCTTCTGCAATGTTACAATGTGTGTTTGATATCTGGATCAGATACCAGATATTGTGtccttgtttttcttaaaatacctgtatttttcaaaaaaagaaattgaatgCTCCATGAGTCATGTGTCTTTTATTGGCTGGACATTTGATGCTGCACTAACTACAGCATGTGTTTCGActtaaaagtactaaaatatagactaatcaagttcaaggcacctTATCTTTGGTAGAACCATGGCCACCTGCATCAGTTCAAAGTTTAGTAGTGTTTTAAAAGGAGGTACTTAGCAGATAGCAACGCATCTGCAGACCGGTCTCTTTGATCATACGCAACACTAACGTGTCCACGGGGAAGGCAGAGCAGAAAGGAGTGATAAAGTACACAAGCGTTAGTAACGCTCCCATGTCTGCATGCTAACAGCTTGATGGCTTGGAAAGGAGGGAACTAGAAAGTAATTTGAGAGAAACTGTGTCTGATTCTTTGATGTCATCAGTAGGTACACACTGTGAGTAGAGGTCACTGTTTGGTTGAGGTTCTAGATCTGGATCCAGAGTTGTACCCTCTGGTTCTTTCTTAACTGTCACTGCAATTGCGCTGGTCTTGTCTTCCCCTTGTTTCAGGTGATAAACACAAGCTAGAGTGTCTGGGGAAGCACCAATACTGGAGGGCGTTTCAGGGGGGACATCTAATTTGGGCACTAAGGTGAAACAAGTGGCCTCAGGAAGAGTCAAAGCCACACTGGTCCTGTCCTGAACTAAAGCTCTGGCCCTGCTGGGAGAGCTAAGATCAGCTGGCTCGTCTTGGTTCAATGGCACCAGAAGGGACGTGCCATTCCACTTCAGAGATACTCCAAGATCCTCAGATTCCATCTTTGGCCTTTTGGTCATTAACTGTTCATCCCGACTCTGCAGTTCTGCGAGTTCCACATCTCCTGTAGACCTCTTGGTGATGGCTCGTTTGCTCAGGTTCAGCGGGAGGGATTGGTCTTGAGGAATACTTCCATTGGGTTGGGAGGTCTTGCTGAGATCCTGAGCCAGAACTTCAGAAAGTCGCTTGGTGAAGGTGTTCATATGTGTCGAGCCAAGACGGGTGCGCATCAGTTGACGCAGCTGCAGACTACAGCCGATGTCCAGTGGGAGGATCCTAAGAGGCGGTAGAGGAGCTCTAGTCAAGGCGAGTCCTCCGTTCTGAGACAAAGTATCCGAGCTACACCCTGAACACTGGTGTTGGGGACTCTCAGGAGTCTCAGGCATACTGACTTTGGGCTGATGCACCATAATTGTCTGTTGGGGTGTGGTAGAATCTTGAGGAGGTACCTCAGGAGTACTCGCTCCATTAAGACCCAGGCGAGCTCGAAAGAGGTCCAAAGGACATAATCCTTTAGTAGGACTGAATCCTTCTAAAGAACCACCTGCCAGCAATTTGCAAGGAACTGACAGAAAGGAAGGAGCTTGAGGTTCTACAGTCTCCATTTTCACATCTAGCCCCAGCACGGGTTGGTGAGGCACCGGTACAGAAGACACAAGTGACAGACCTTGGCCATGAGGATGATTGGTGAGCTTTAGTTCTTGAAAAAGTGTCAATGGCTGGACAATCTCTTGATGGGGTCTTGCTGGTTTCTCTAGGGGAGGTTTAGGGTGCAAGGGTGGCCTTCCAACTCTGCCTTTGGACAGAACCTTGGCATTGCGTTTTCCAGGTGGCCTCCCTCTTTTCCGTACAACAGCGCCATCTAGTG

Function

NR:

description
PREDICTED: uncharacterized protein LOC107581964 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126301 True 2586 lncRNA 0.42 1 2869163 2871748

Neighbor

gene id symbol gene type direction distance location
LOC122355797 ccdc6a,LOC107717103,LOC107663299,LOC107671115,LOC107733539,LOC108431652,LOC105910584,LOC105010545 coding upstream 71710 2786843 ~ 2797453 (+)
ngfrb ngfrb,LOC107745659,LOC107684756,LOC107569198,LOC107560558,LOC107694076,LOC107753306 coding upstream 218878 2621204 ~ 2650285 (+)
mpp2b mpp2b,LOC107684751,LOC107569196,LOC107694069,LOC107753302 coding upstream 292261 2545758 ~ 2576902 (+)
pyyb pyyb,LOC107695522,LOC107745683,LOC107569181,LOC107753323,LOC107684781,LOC107560546 coding upstream 324044 2542386 ~ 2545119 (+)
tut1 LOC107684771,LOC107695563,LOC107560560,LOC107753301 coding upstream 336345 2528102 ~ 2532818 (+)
atoh1c LOC107598046,LOC107745660,LOC107660485,LOC107678425,LOC107716449,LOC107571691 coding downstream 624541 3496289 ~ 3497041 (+)
LOC122355621 htra1,htra1b,LOC107660481,LOC107745581,LOC107598034,LOC106578991 coding downstream 718844 3590592 ~ 3616744 (+)
LOC122355747 htra1,htra1b,LOC107660481,LOC107745581,LOC107598034,LOC106578991 coding downstream 821363 3693111 ~ 3720271 (+)
zgc:174164 LOC107678320,LOC107745598,LOC107571735 coding downstream 859756 3731504 ~ 3742885 (+)
get4 get4,LOC107716485,LOC107598031,LOC107660479,LOC107678333,LOC107571739 coding downstream 871528 3743276 ~ 3753428 (+)
G85215 NA non-coding upstream 188846 2680044 ~ 2680317 (+)
G85213 NA non-coding upstream 189869 2678714 ~ 2679294 (+)
G85097 NA non-coding upstream 262946 2605096 ~ 2606217 (+)
G85074 psmc5,LOC107684752,LOC103381410,LOC107753303 non-coding upstream 285835 2582799 ~ 2583328 (+)
G85051 NA non-coding upstream 483381 2385239 ~ 2385782 (+)
G85332 NA non-coding downstream 889554 3761302 ~ 3788868 (+)
G85444 NA non-coding downstream 1121038 3992786 ~ 3999479 (+)
G85477 NA non-coding downstream 1357007 4228755 ~ 4229534 (+)
G85550 NA non-coding downstream 1439719 4311467 ~ 4311944 (+)
G85552 NA non-coding downstream 1440831 4312579 ~ 4313030 (+)
LOC122355426 rhobtb1,LOC107654062,LOC107727061,LOC107695540,LOC107552568,LOC107746840,LOC107718339,LOC107680668,LOC107676653 other upstream 48550 2801612 ~ 2820613 (+)
LOC122355862 ank3a,LOC107663296,LOC107733536,LOC107717054,LOC107654059,LOC107727055,LOC107746453,LOC107695539 other upstream 85193 2715640 ~ 2783970 (+)
G84866 ank3,LOC107746453,LOC107654059 other upstream 1037172 1820519 ~ 1831991 (+)
bicc1b bicc1,LOC107653928,LOC107596591 other upstream 1139733 1659828 ~ 1729430 (+)
si:ch211-131k2.2 NA other upstream 1885373 981423 ~ 983790 (+)
LOC122355768 waplb,wapl,LOC107598042,LOC107660482,LOC107716480,LOC107745560,LOC107678383,LOC107571690,LOC105006405 other downstream 302441 3174189 ~ 3211352 (+)
btbd16 btbd16,LOC107660483,LOC107716451,LOC107598041 other downstream 382970 3254718 ~ 3267839 (+)
ndufa4b ndufa4,ndua4,LOC107745684,LOC107569184,LOC107684782,LOC103023526,LOC108443163 other downstream 1403592 4275340 ~ 4277385 (+)
LOC122355090 ebf4,ebf3,LOC107750882,LOC107668586,LOC107671096 other downstream 1527848 4399596 ~ 4408405 (+)
LOC122355720 gnrh2,LOC107750862,LOC107671109 other downstream 1546499 4418247 ~ 4419213 (+)

Expression


Co-expression Network